RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 USP17L12C9JPN9 530 aa27.32■■□□□ 1.96
CPSF4-204ENST00000436336 USP17L21D6R901 530 aa27.32■■□□□ 1.96
CPSF4-204ENST00000436336 PPARAQ07869 468 aa27.32■■□□□ 1.96
CPSF4-204ENST00000436336 STOX1Q6ZVD7 989 aa27.32■■□□□ 1.96
CPSF4-204ENST00000436336 MYOZ2Q9NPC6 264 aa27.32■■□□□ 1.96
CPSF4-204ENST00000436336 ZC3H4Q9UPT8 1303 aaKnown RBP27.31■■□□□ 1.96
CPSF4-204ENST00000436336 MINDY4BA8MYZ0 360 aa27.31■■□□□ 1.96
CPSF4-204ENST00000436336 CASTP20810 708 aaKnown RBP27.31■■□□□ 1.96
CPSF4-204ENST00000436336 NEK1Q96PY6 1258 aa27.31■■□□□ 1.96
CPSF4-204ENST00000436336 NBPF3Q9H094 633 aa27.31■■□□□ 1.96
CPSF4-204ENST00000436336 ZSWIM6Q9HCJ5 1215 aa27.31■■□□□ 1.96
CPSF4-204ENST00000436336 CNOT7Q9UIV1 285 aaKnown RBP27.31■■□□□ 1.96
CPSF4-204ENST00000436336 MICALL2Q8IY33 904 aa27.3■■□□□ 1.96
CPSF4-204ENST00000436336 AMOTL1Q8IY63 956 aa27.3■■□□□ 1.96
CPSF4-204ENST00000436336 ZBED3Q96IU2 234 aaPredicted RBP27.3■■□□□ 1.96
CPSF4-204ENST00000436336 IDI2Q9BXS1 227 aa27.3■■□□□ 1.96
CPSF4-204ENST00000436336 TDRD3Q9H7E2 651 aaKnown RBP27.3■■□□□ 1.96
CPSF4-204ENST00000436336 UTRNP46939 3433 aa27.3■■□□□ 1.96
CPSF4-204ENST00000436336 NEK4P51957 841 aa27.3■■□□□ 1.96
CPSF4-204ENST00000436336 TBC1D10CQ8IV04 446 aa27.3■■□□□ 1.96
CPSF4-204ENST00000436336 NPM3O75607 178 aaKnown RBP27.29■■□□□ 1.96
CPSF4-204ENST00000436336 CTDSPL2Q05D32 466 aa27.29■■□□□ 1.96
CPSF4-204ENST00000436336 BLOC1S2Q6QNY1 142 aa27.29■■□□□ 1.96
CPSF4-204ENST00000436336 RUFY3Q7L099 469 aa27.29■■□□□ 1.96
CPSF4-204ENST00000436336 UPF3BQ9BZI7 483 aaKnown RBP27.29■■□□□ 1.96
CPSF4-204ENST00000436336 CYP46A1Q9Y6A2 500 aa27.29■■□□□ 1.96
CPSF4-204ENST00000436336 SHTN1A0MZ66 631 aa27.28■■□□□ 1.96
CPSF4-204ENST00000436336 ST18O60284 1047 aa27.28■■□□□ 1.96
CPSF4-204ENST00000436336 HMGB1P09429 215 aaKnown RBP27.28■■□□□ 1.96
CPSF4-204ENST00000436336 PICALMQ13492 652 aa27.28■■□□□ 1.96
CPSF4-204ENST00000436336 C12orf60Q5U649 245 aa27.28■■□□□ 1.96
CPSF4-204ENST00000436336 DDX4Q9NQI0 724 aaKnown RBP27.28■■□□□ 1.96
CPSF4-204ENST00000436336 AKNAD1Q5T1N1 836 aa27.27■■□□□ 1.96
CPSF4-204ENST00000436336 NCOA7Q8NI08 942 aa27.27■■□□□ 1.96
CPSF4-204ENST00000436336 STAG1Q8WVM7 1258 aa27.27■■□□□ 1.96
CPSF4-204ENST00000436336 RNF41Q9H4P4 317 aaPredicted RBP27.27■■□□□ 1.96
CPSF4-204ENST00000436336 TMOD2Q9NZR1 351 aa27.27■■□□□ 1.96
CPSF4-204ENST00000436336 CYP2D7A0A087X1C5 515 aa27.27■■□□□ 1.96
CPSF4-204ENST00000436336 MYO1BO43795 1136 aa27.27■■□□□ 1.96
CPSF4-204ENST00000436336 POLR3DP05423 398 aaPredicted RBP27.27■■□□□ 1.96
CPSF4-204ENST00000436336 NFIAQ12857 509 aa27.27■■□□□ 1.96
CPSF4-204ENST00000436336 TRDNQ13061 729 aa27.27■■□□□ 1.96
CPSF4-204ENST00000436336 OSBPL5Q9H0X9 879 aaPredicted RBP27.27■■□□□ 1.96
CPSF4-204ENST00000436336 GPRC5DQ9NZD1 345 aa27.27■■□□□ 1.96
CPSF4-204ENST00000436336 MYH8P13535 1937 aa27.26■■□□□ 1.95
CPSF4-204ENST00000436336 H7C1D1 291 aa27.26■■□□□ 1.95
CPSF4-204ENST00000436336 WNT10BO00744 389 aa27.26■■□□□ 1.95
CPSF4-204ENST00000436336 SLC3A2P08195 630 aaKnown RBP27.26■■□□□ 1.95
CPSF4-204ENST00000436336 SPDYE2Q495Y8 402 aa27.26■■□□□ 1.95
CPSF4-204ENST00000436336 MFSD6Q6ZSS7 791 aa27.26■■□□□ 1.95
CPSF4-204ENST00000436336 SNX21Q969T3 373 aa27.26■■□□□ 1.95
CPSF4-204ENST00000436336 SAP30BPQ9UHR5 308 aaKnown RBP27.26■■□□□ 1.95
CPSF4-204ENST00000436336 ROBO3Q96MS0 1386 aa27.26■■□□□ 1.95
CPSF4-204ENST00000436336 DDNO94850 711 aaPredicted RBP27.25■■□□□ 1.95
CPSF4-204ENST00000436336 CYP2D6P10635 497 aa27.25■■□□□ 1.95
CPSF4-204ENST00000436336 PCP11498 1178 aaKnown RBP27.25■■□□□ 1.95
CPSF4-204ENST00000436336 RPS6KB1P23443 525 aa27.25■■□□□ 1.95
CPSF4-204ENST00000436336 DPY19L2Q6NUT2 758 aa27.25■■□□□ 1.95
CPSF4-204ENST00000436336 RALYLQ86SE5 291 aaKnown RBP27.25■■□□□ 1.95
CPSF4-204ENST00000436336 CNNM2Q9H8M5 875 aa27.25■■□□□ 1.95
CPSF4-204ENST00000436336 ZNF70Q9UC06 446 aaPredicted RBP27.25■■□□□ 1.95
CPSF4-204ENST00000436336 CACNB3P54284 484 aa27.24■■□□□ 1.95
CPSF4-204ENST00000436336 FAM198AQ9UFP1 575 aa27.24■■□□□ 1.95
CPSF4-204ENST00000436336 ENTPD3O75355 529 aa27.24■■□□□ 1.95
CPSF4-204ENST00000436336 CPA1P15085 419 aa27.24■■□□□ 1.95
CPSF4-204ENST00000436336 TTC14Q96N46 770 aa27.24■■□□□ 1.95
CPSF4-204ENST00000436336 KRT23Q9C075 422 aa27.24■■□□□ 1.95
CPSF4-204ENST00000436336 COL2A1P02458 1487 aaPredicted RBP27.23■■□□□ 1.95
CPSF4-204ENST00000436336 FGRP09769 529 aa27.23■■□□□ 1.95
CPSF4-204ENST00000436336 NBPF9Q3BBW0 867 aa27.23■■□□□ 1.95
CPSF4-204ENST00000436336 FKBP1CQ5VVH2 108 aa27.23■■□□□ 1.95
CPSF4-204ENST00000436336 DHX32Q7L7V1 743 aaKnown RBP27.23■■□□□ 1.95
CPSF4-204ENST00000436336 SAMD7Q7Z3H4 446 aa27.23■■□□□ 1.95
CPSF4-204ENST00000436336 TTC6Q86TZ1 520 aa27.23■■□□□ 1.95
CPSF4-204ENST00000436336 NEDD4P46934 1319 aa27.23■■□□□ 1.95
CPSF4-204ENST00000436336 SIPA1L1O43166 1804 aa27.22■■□□□ 1.95
CPSF4-204ENST00000436336 SMIM22K7EJ46 135 aa27.22■■□□□ 1.95
CPSF4-204ENST00000436336 PLCD1P51178 756 aa27.22■■□□□ 1.95
CPSF4-204ENST00000436336 COL9A3Q14050 684 aaPredicted RBP27.22■■□□□ 1.95
CPSF4-204ENST00000436336 BECN1Q14457 450 aa27.22■■□□□ 1.95
CPSF4-204ENST00000436336 KIF4BQ2VIQ3 1234 aa27.22■■□□□ 1.95
CPSF4-204ENST00000436336 RBM26Q5T8P6 1007 aaKnown RBP27.22■■□□□ 1.95
CPSF4-204ENST00000436336 MB21D2Q8IYB1 491 aaPredicted RBP27.22■■□□□ 1.95
CPSF4-204ENST00000436336 PDRG1Q9NUG6 133 aa27.22■■□□□ 1.95
CPSF4-204ENST00000436336 TACC3Q9Y6A5 838 aa27.22■■□□□ 1.95
CPSF4-204ENST00000436336 CLRN2A0PK11 232 aa27.21■■□□□ 1.95
CPSF4-204ENST00000436336 EVX2Q03828 476 aa27.21■■□□□ 1.95
CPSF4-204ENST00000436336 SLC4A8Q2Y0W8 1093 aa27.21■■□□□ 1.95
CPSF4-204ENST00000436336 TBC1D10BQ4KMP7 808 aaPredicted RBP27.21■■□□□ 1.95
CPSF4-204ENST00000436336 DHX36Q9H2U1 1008 aaKnown RBP27.21■■□□□ 1.95
CPSF4-204ENST00000436336 CD2BP2O95400 341 aaKnown RBP27.21■■□□□ 1.95
CPSF4-204ENST00000436336 EGFRP00533 1210 aa27.21■■□□□ 1.95
CPSF4-204ENST00000436336 LMOD1P29536 600 aaPredicted RBP27.21■■□□□ 1.95
CPSF4-204ENST00000436336 PDE4BQ07343 736 aa27.21■■□□□ 1.95
CPSF4-204ENST00000436336 HSCBQ8IWL3 235 aa27.21■■□□□ 1.95
CPSF4-204ENST00000436336 STK11IPQ8N1F8 1099 aa27.21■■□□□ 1.95
CPSF4-204ENST00000436336 ALDH8A1Q9H2A2 487 aaPredicted RBP27.21■■□□□ 1.95
CPSF4-204ENST00000436336 INCENPQ9NQS7 918 aa27.21■■□□□ 1.95
CPSF4-204ENST00000436336 SCN4AP35499 1836 aa27.2■■□□□ 1.95
CPSF4-204ENST00000436336 MCM5P33992 734 aa27.2■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms