RNA–Protein interactions for RNA: ENST00000427506.5

GPC1-205, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 573 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-205ENST00000427506 ZBTB40Q9NUA8 1239 aa22.57■■□□□ 1.2
GPC1-205ENST00000427506 WDHD1O75717 1129 aaPredicted RBP22.56■■□□□ 1.2
GPC1-205ENST00000427506 AACSQ86V21 672 aa22.56■■□□□ 1.2
GPC1-205ENST00000427506 DDX4Q9NQI0 724 aaKnown RBP22.56■■□□□ 1.2
GPC1-205ENST00000427506 AK9Q5TCS8 1911 aa22.55■■□□□ 1.2
GPC1-205ENST00000427506 APBB1O00213 710 aa22.55■■□□□ 1.2
GPC1-205ENST00000427506 CYP2E1P05181 493 aaPredicted RBP22.55■■□□□ 1.2
GPC1-205ENST00000427506 ZAP70P43403 619 aa22.55■■□□□ 1.2
GPC1-205ENST00000427506 RHBDL3P58872 404 aa22.55■■□□□ 1.2
GPC1-205ENST00000427506 NAA16Q6N069 864 aaPredicted RBP22.55■■□□□ 1.2
GPC1-205ENST00000427506 BRI3BPQ8WY22 251 aa22.55■■□□□ 1.2
GPC1-205ENST00000427506 ZNF112Q9UJU3 913 aa22.55■■□□□ 1.2
GPC1-205ENST00000427506 MAP4K4O95819 1239 aaPredicted RBP22.54■■□□□ 1.2
GPC1-205ENST00000427506 CETPP11597 493 aa22.54■■□□□ 1.2
GPC1-205ENST00000427506 CRHR2Q13324 411 aa22.54■■□□□ 1.2
GPC1-205ENST00000427506 PPIL2Q13356 520 aa22.54■■□□□ 1.2
GPC1-205ENST00000427506 SNAPC2Q13487 334 aa22.54■■□□□ 1.2
GPC1-205ENST00000427506 PDE3AQ14432 1141 aa22.54■■□□□ 1.2
GPC1-205ENST00000427506 RHPN1Q8TCX5 695 aa22.54■■□□□ 1.2
GPC1-205ENST00000427506 BCL11AQ9H165 835 aa22.54■■□□□ 1.2
GPC1-205ENST00000427506 IL1RAPL2Q9NP60 686 aa22.54■■□□□ 1.2
GPC1-205ENST00000427506 RFX7Q2KHR2 1363 aa22.53■■□□□ 1.2
GPC1-205ENST00000427506 DDTLA6NHG4 134 aaPredicted RBP22.53■■□□□ 1.2
GPC1-205ENST00000427506 IRF6O14896 467 aa22.53■■□□□ 1.2
GPC1-205ENST00000427506 BAG3O95817 575 aa22.53■■□□□ 1.2
GPC1-205ENST00000427506 PPATQ06203 517 aa22.53■■□□□ 1.2
GPC1-205ENST00000427506 PKN2Q16513 984 aaKnown RBP22.53■■□□□ 1.2
GPC1-205ENST00000427506 C20orf194Q5TEA3 1177 aa22.53■■□□□ 1.2
GPC1-205ENST00000427506 SH3BP5LQ7L8J4 393 aa22.53■■□□□ 1.2
GPC1-205ENST00000427506 LAMB1P07942 1786 aa22.53■■□□□ 1.2
GPC1-205ENST00000427506 TEX11Q8IYF3 940 aa22.52■■□□□ 1.2
GPC1-205ENST00000427506 TAF1CQ15572 869 aaPredicted RBP22.51■■□□□ 1.19
GPC1-205ENST00000427506 NOL9Q5SY16 702 aaKnown RBP22.51■■□□□ 1.19
GPC1-205ENST00000427506 SIRT2Q8IXJ6 389 aa22.51■■□□□ 1.19
GPC1-205ENST00000427506 CLASRPQ8N2M8 674 aaKnown RBP22.51■■□□□ 1.19
GPC1-205ENST00000427506 KIF1BPQ96EK5 621 aa22.51■■□□□ 1.19
GPC1-205ENST00000427506 ZFYVE28Q9HCC9 887 aa22.51■■□□□ 1.19
GPC1-205ENST00000427506 PIH1D3Q9NQM4 214 aaKnown RBP22.51■■□□□ 1.19
GPC1-205ENST00000427506 AATFQ9NY61 560 aaKnown RBP eCLIP22.51■■□□□ 1.19
GPC1-205ENST00000427506 NPM3O75607 178 aaKnown RBP22.5■■□□□ 1.19
GPC1-205ENST00000427506 FAM43AQ8N2R8 423 aa22.5■■□□□ 1.19
GPC1-205ENST00000427506 SH3RF3Q8TEJ3 882 aaPredicted RBP22.5■■□□□ 1.19
GPC1-205ENST00000427506 ATRNL1Q5VV63 1379 aa22.5■■□□□ 1.19
GPC1-205ENST00000427506 IGSF3O75054 1194 aa22.49■■□□□ 1.19
GPC1-205ENST00000427506 RAB11FIP3O75154 756 aa22.49■■□□□ 1.19
GPC1-205ENST00000427506 IDH1O75874 414 aaKnown RBP22.49■■□□□ 1.19
GPC1-205ENST00000427506 PLCG2P16885 1265 aa22.49■■□□□ 1.19
GPC1-205ENST00000427506 OSBPL5Q9H0X9 879 aaPredicted RBP22.49■■□□□ 1.19
GPC1-205ENST00000427506 PICK1Q9NRD5 415 aa22.49■■□□□ 1.19
GPC1-205ENST00000427506 DOCK2Q92608 1830 aa22.48■■□□□ 1.19
GPC1-205ENST00000427506 PHF20L1A8MW92 1017 aa22.48■■□□□ 1.19
GPC1-205ENST00000427506 IFIT2P09913 472 aaKnown RBP22.48■■□□□ 1.19
GPC1-205ENST00000427506 SCYL3Q8IZE3 742 aa22.48■■□□□ 1.19
GPC1-205ENST00000427506 ERO1AQ96HE7 468 aa22.48■■□□□ 1.19
GPC1-205ENST00000427506 NDUFB9Q9Y6M9 179 aa22.48■■□□□ 1.19
GPC1-205ENST00000427506 BTBD19C9JJ37 291 aa22.47■■□□□ 1.19
GPC1-205ENST00000427506 SLURP2P0DP57 97 aa22.47■■□□□ 1.19
GPC1-205ENST00000427506 CYP7A1P22680 504 aa22.47■■□□□ 1.19
GPC1-205ENST00000427506 SP3Q02447 781 aa22.47■■□□□ 1.19
GPC1-205ENST00000427506 MAP3K10Q02779 954 aa22.47■■□□□ 1.19
GPC1-205ENST00000427506 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.47■■□□□ 1.19
GPC1-205ENST00000427506 HPS5Q9UPZ3 1129 aa22.47■■□□□ 1.19
GPC1-205ENST00000427506 TRIM17Q9Y577 477 aa22.47■■□□□ 1.19
GPC1-205ENST00000427506 MAST2Q6P0Q8 1798 aa22.46■■□□□ 1.19
GPC1-205ENST00000427506 PPP4CP60510 307 aa22.46■■□□□ 1.19
GPC1-205ENST00000427506 FBXO46Q6PJ61 603 aaPredicted RBP22.46■■□□□ 1.19
GPC1-205ENST00000427506 ADGRA1Q86SQ6 560 aa22.46■■□□□ 1.19
GPC1-205ENST00000427506 CD99L2Q8TCZ2 262 aa22.46■■□□□ 1.19
GPC1-205ENST00000427506 ZHX2Q9Y6X8 837 aa22.46■■□□□ 1.19
GPC1-205ENST00000427506 CTNND1O60716 968 aaKnown RBP22.45■■□□□ 1.18
GPC1-205ENST00000427506 MAP3K12Q12852 859 aa22.45■■□□□ 1.18
GPC1-205ENST00000427506 MAGEB6Q8N7X4 407 aa22.45■■□□□ 1.18
GPC1-205ENST00000427506 TGFBRAP1Q8WUH2 860 aa22.45■■□□□ 1.18
GPC1-205ENST00000427506 ANTXR1Q9H6X2 564 aa22.45■■□□□ 1.18
GPC1-205ENST00000427506 ZCCHC17Q9NP64 241 aaKnown RBP22.45■■□□□ 1.18
GPC1-205ENST00000427506 KCNH4Q9UQ05 1017 aa22.45■■□□□ 1.18
GPC1-205ENST00000427506 FAM196BA6NMK8 535 aa22.44■■□□□ 1.18
GPC1-205ENST00000427506 TBC1D12O60347 775 aa22.44■■□□□ 1.18
GPC1-205ENST00000427506 PTPRAP18433 802 aa22.44■■□□□ 1.18
GPC1-205ENST00000427506 MAPKAPK5Q8IW41 473 aa22.44■■□□□ 1.18
GPC1-205ENST00000427506 COL2A1P02458 1487 aaPredicted RBP22.43■■□□□ 1.18
GPC1-205ENST00000427506 CXCL11O14625 94 aa22.43■■□□□ 1.18
GPC1-205ENST00000427506 DYNLL1P63167 89 aaKnown RBP22.43■■□□□ 1.18
GPC1-205ENST00000427506 TTF1Q15361 905 aaPredicted RBP22.43■■□□□ 1.18
GPC1-205ENST00000427506 OTOP1Q7RTM1 612 aa22.43■■□□□ 1.18
GPC1-205ENST00000427506 ANKRD23Q86SG2 305 aa22.43■■□□□ 1.18
GPC1-205ENST00000427506 YTHDC1Q96MU7 727 aaKnown RBP22.43■■□□□ 1.18
GPC1-205ENST00000427506 DHX36Q9H2U1 1008 aaKnown RBP22.43■■□□□ 1.18
GPC1-205ENST00000427506 TLR2O60603 784 aa22.42■■□□□ 1.18
GPC1-205ENST00000427506 MIGA1Q8NAN2 632 aa22.42■■□□□ 1.18
GPC1-205ENST00000427506 DNAJC2Q99543 621 aaKnown RBP22.42■■□□□ 1.18
GPC1-205ENST00000427506 EFCC1Q9HA90 598 aa22.42■■□□□ 1.18
GPC1-205ENST00000427506 PI4KBQ9UBF8 816 aa22.42■■□□□ 1.18
GPC1-205ENST00000427506 FLT1P17948 1338 aa22.41■■□□□ 1.18
GPC1-205ENST00000427506 PDHXO00330 501 aa22.41■■□□□ 1.18
GPC1-205ENST00000427506 ARHGEF6Q15052 776 aa22.41■■□□□ 1.18
GPC1-205ENST00000427506 CERS3Q8IU89 383 aa22.41■■□□□ 1.18
GPC1-205ENST00000427506 TRIM34Q9BYJ4 488 aa22.41■■□□□ 1.18
GPC1-205ENST00000427506 HERC5Q9UII4 1024 aaKnown RBP22.41■■□□□ 1.18
GPC1-205ENST00000427506 USP5P45974 858 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms