RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 XAGE2Q96GT9 111 aa11.2□□□□□ -0.62
USP54-205ENST00000424265 CENPHQ9H3R5 247 aa11.2□□□□□ -0.62
USP54-205ENST00000424265 HELLSQ9NRZ9 838 aa11.2□□□□□ -0.62
USP54-205ENST00000424265 MAP4K4O95819 1239 aaPredicted RBP11.19□□□□□ -0.62
USP54-205ENST00000424265 PDIA6Q15084 440 aa11.19□□□□□ -0.62
USP54-205ENST00000424265 OGFOD1Q8N543 542 aa11.19□□□□□ -0.62
USP54-205ENST00000424265 KLHL23Q8NBE8 558 aa11.19□□□□□ -0.62
USP54-205ENST00000424265 MASTLQ96GX5 879 aa11.19□□□□□ -0.62
USP54-205ENST00000424265 PYCARDQ9ULZ3 195 aa11.19□□□□□ -0.62
USP54-205ENST00000424265 USP42Q9H9J4 1324 aaKnown RBP11.19□□□□□ -0.62
USP54-205ENST00000424265 RNF113AO15541 343 aaKnown RBP11.19□□□□□ -0.62
USP54-205ENST00000424265 XBP1P17861 261 aa11.19□□□□□ -0.62
USP54-205ENST00000424265 PDCD2Q16342 344 aaPredicted RBP11.19□□□□□ -0.62
USP54-205ENST00000424265 ERFEQ4G0M1 354 aa11.19□□□□□ -0.62
USP54-205ENST00000424265 NAA16Q6N069 864 aaPredicted RBP11.19□□□□□ -0.62
USP54-205ENST00000424265 BLOC1S2Q6QNY1 142 aa11.19□□□□□ -0.62
USP54-205ENST00000424265 JPH2Q9BR39 696 aaPredicted RBP11.19□□□□□ -0.62
USP54-205ENST00000424265 GBP2P32456 591 aaPredicted RBP11.19□□□□□ -0.62
USP54-205ENST00000424265 RWDD2BP57060 319 aa11.19□□□□□ -0.62
USP54-205ENST00000424265 HLFQ16534 295 aa11.19□□□□□ -0.62
USP54-205ENST00000424265 MCMDC2Q4G0Z9 681 aa11.19□□□□□ -0.62
USP54-205ENST00000424265 TEX11Q8IYF3 940 aa11.19□□□□□ -0.62
USP54-205ENST00000424265 ARMC2Q8NEN0 867 aa11.19□□□□□ -0.62
USP54-205ENST00000424265 CTDP1Q9Y5B0 961 aaPredicted RBP11.19□□□□□ -0.62
USP54-205ENST00000424265 MRC1P22897 1456 aa11.19□□□□□ -0.62
USP54-205ENST00000424265 A0A087WUV0 522 aaPredicted RBP11.19□□□□□ -0.62
USP54-205ENST00000424265 SDSP20132 328 aa11.19□□□□□ -0.62
USP54-205ENST00000424265 SRP68Q9UHB9 627 aaKnown RBP11.19□□□□□ -0.62
USP54-205ENST00000424265 RABL6Q3YEC7 729 aaPredicted RBP11.18□□□□□ -0.62
USP54-205ENST00000424265 SLFNL1Q499Z3 407 aa11.18□□□□□ -0.62
USP54-205ENST00000424265 TTLL11Q8NHH1 800 aa11.18□□□□□ -0.62
USP54-205ENST00000424265 CRACR2AQ9BSW2 395 aa11.18□□□□□ -0.62
USP54-205ENST00000424265 BRIP1Q9BX63 1249 aa11.18□□□□□ -0.62
USP54-205ENST00000424265 ZNF215Q9UL58 517 aaPredicted RBP11.18□□□□□ -0.62
USP54-205ENST00000424265 KDM4AO75164 1064 aa11.18□□□□□ -0.62
USP54-205ENST00000424265 PDE8BO95263 885 aa11.18□□□□□ -0.62
USP54-205ENST00000424265 MMP10P09238 476 aa11.18□□□□□ -0.62
USP54-205ENST00000424265 EN1Q05925 392 aaPredicted RBP11.18□□□□□ -0.62
USP54-205ENST00000424265 INTS5Q6P9B9 1019 aaKnown RBP11.18□□□□□ -0.62
USP54-205ENST00000424265 CCAR2Q8N163 923 aaKnown RBP11.18□□□□□ -0.62
USP54-205ENST00000424265 NWD2Q9ULI1 1742 aa11.18□□□□□ -0.62
USP54-205ENST00000424265 RGPD1P0DJD0 1748 aa11.18□□□□□ -0.62
USP54-205ENST00000424265 PPEF1O14829 653 aaPredicted RBP11.18□□□□□ -0.62
USP54-205ENST00000424265 LDHBP07195 334 aaKnown RBP11.18□□□□□ -0.62
USP54-205ENST00000424265 ABCD1P33897 745 aa11.18□□□□□ -0.62
USP54-205ENST00000424265 GSCP56915 257 aaPredicted RBP11.18□□□□□ -0.62
USP54-205ENST00000424265 ARHGAP29Q52LW3 1261 aa11.18□□□□□ -0.62
USP54-205ENST00000424265 GREM2Q9H772 168 aa11.18□□□□□ -0.62
USP54-205ENST00000424265 HLA-DOAP06340 250 aa11.18□□□□□ -0.62
USP54-205ENST00000424265 PDCP20941 246 aa11.18□□□□□ -0.62
USP54-205ENST00000424265 SLC15A2Q16348 729 aa11.18□□□□□ -0.62
USP54-205ENST00000424265 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.18□□□□□ -0.62
USP54-205ENST00000424265 STAP2Q9UGK3 403 aa11.18□□□□□ -0.62
USP54-205ENST00000424265 CASTP20810 708 aaKnown RBP11.17□□□□□ -0.62
USP54-205ENST00000424265 NAA30Q147X3 362 aaPredicted RBP11.17□□□□□ -0.62
USP54-205ENST00000424265 TADA2BQ86TJ2 420 aa11.17□□□□□ -0.62
USP54-205ENST00000424265 NUP133Q8WUM0 1156 aa11.17□□□□□ -0.62
USP54-205ENST00000424265 OSBPL3Q9H4L5 887 aa11.17□□□□□ -0.62
USP54-205ENST00000424265 TMEM63CQ9P1W3 806 aa11.17□□□□□ -0.62
USP54-205ENST00000424265 H3BQV1 296 aa11.17□□□□□ -0.62
USP54-205ENST00000424265 TPD52L2O43399 206 aaKnown RBP11.17□□□□□ -0.62
USP54-205ENST00000424265 IFFO2Q5TF58 517 aa11.17□□□□□ -0.62
USP54-205ENST00000424265 TBC1D9Q6ZT07 1266 aa11.17□□□□□ -0.62
USP54-205ENST00000424265 VPS18Q9P253 973 aa11.17□□□□□ -0.62
USP54-205ENST00000424265 CDKL5O76039 1030 aa11.17□□□□□ -0.62
USP54-205ENST00000424265 POLR3DP05423 398 aaPredicted RBP11.17□□□□□ -0.62
USP54-205ENST00000424265 ELF1P32519 619 aa11.17□□□□□ -0.62
USP54-205ENST00000424265 SF3B3Q15393 1217 aaKnown RBP11.17□□□□□ -0.62
USP54-205ENST00000424265 DBN1Q16643 649 aa11.17□□□□□ -0.62
USP54-205ENST00000424265 CCDC183Q5T5S1 534 aa11.17□□□□□ -0.62
USP54-205ENST00000424265 EXOC4Q96A65 974 aa11.17□□□□□ -0.62
USP54-205ENST00000424265 CHCHD3Q9NX63 227 aaKnown RBP11.17□□□□□ -0.62
USP54-205ENST00000424265 PTGS1P23219 599 aa11.17□□□□□ -0.62
USP54-205ENST00000424265 UBAC1Q9BSL1 405 aa11.17□□□□□ -0.62
USP54-205ENST00000424265 ZNF213O14771 459 aa11.16□□□□□ -0.62
USP54-205ENST00000424265 CYP7A1P22680 504 aa11.16□□□□□ -0.62
USP54-205ENST00000424265 PEX19P40855 299 aa11.16□□□□□ -0.62
USP54-205ENST00000424265 TBC1D9BQ66K14 1250 aa11.16□□□□□ -0.62
USP54-205ENST00000424265 RTKN2Q8IZC4 609 aa11.16□□□□□ -0.62
USP54-205ENST00000424265 ZNF594Q96JF6 807 aaPredicted RBP11.16□□□□□ -0.62
USP54-205ENST00000424265 LRRC37A3O60309 1634 aa11.16□□□□□ -0.62
USP54-205ENST00000424265 ABCC12Q96J65 1359 aa11.16□□□□□ -0.62
USP54-205ENST00000424265 GOLGA6L10A6NI86 522 aa11.16□□□□□ -0.62
USP54-205ENST00000424265 CHRNDQ07001 517 aa11.16□□□□□ -0.62
USP54-205ENST00000424265 PDE4BQ07343 736 aa11.16□□□□□ -0.62
USP54-205ENST00000424265 CNNM2Q9H8M5 875 aa11.16□□□□□ -0.62
USP54-205ENST00000424265 SMC3Q9UQE7 1217 aa11.16□□□□□ -0.62
USP54-205ENST00000424265 GOLGA6L19H0YKK7 550 aa11.16□□□□□ -0.62
USP54-205ENST00000424265 EZRP15311 586 aaKnown RBP11.16□□□□□ -0.62
USP54-205ENST00000424265 NEK4P51957 841 aa11.16□□□□□ -0.62
USP54-205ENST00000424265 SMC1AQ14683 1233 aaKnown RBP11.16□□□□□ -0.62
USP54-205ENST00000424265 MFSD4BQ5TF39 518 aa11.16□□□□□ -0.62
USP54-205ENST00000424265 KBTBD3Q8NAB2 608 aa11.16□□□□□ -0.62
USP54-205ENST00000424265 ZNF446Q9NWS9 450 aa11.16□□□□□ -0.62
USP54-205ENST00000424265 ZNF219Q9P2Y4 722 aaPredicted RBP11.16□□□□□ -0.62
USP54-205ENST00000424265 LRP6O75581 1613 aa11.16□□□□□ -0.62
USP54-205ENST00000424265 PNMA6AP0CW24 399 aaPredicted RBP11.16□□□□□ -0.62
USP54-205ENST00000424265 NFIXQ14938 502 aa11.16□□□□□ -0.62
USP54-205ENST00000424265 SAFBQ15424 915 aaKnown RBP eCLIP11.16□□□□□ -0.62
USP54-205ENST00000424265 SLC9C2Q5TAH2 1124 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms