RNA–Protein interactions for RNA: ENST00000416188.2

PHRF1-203, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PHRF1, Length 5,227 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-203ENST00000416188 CCDC186Q7Z3E2 898 aa17.7■□□□□ 0.42
PHRF1-203ENST00000416188 DNAJC25Q9H1X3 360 aa17.7■□□□□ 0.42
PHRF1-203ENST00000416188 ABT1Q9ULW3 272 aaKnown RBP17.7■□□□□ 0.42
PHRF1-203ENST00000416188 LEMD3Q9Y2U8 911 aa17.7■□□□□ 0.42
PHRF1-203ENST00000416188 BMP15O95972 392 aa17.7■□□□□ 0.42
PHRF1-203ENST00000416188 CLCN1P35523 988 aa17.7■□□□□ 0.42
PHRF1-203ENST00000416188 FCHSD1Q86WN1 690 aa17.7■□□□□ 0.42
PHRF1-203ENST00000416188 PLEKHM2Q8IWE5 1019 aa17.7■□□□□ 0.42
PHRF1-203ENST00000416188 MMRN2Q9H8L6 949 aa17.7■□□□□ 0.42
PHRF1-203ENST00000416188 ZBTB21Q9ULJ3 1066 aa17.7■□□□□ 0.42
PHRF1-203ENST00000416188 MAP3K9P80192 1104 aa17.69■□□□□ 0.42
PHRF1-203ENST00000416188 CEP135Q66GS9 1140 aa17.69■□□□□ 0.42
PHRF1-203ENST00000416188 LRRC27Q9C0I9 530 aa17.69■□□□□ 0.42
PHRF1-203ENST00000416188 RAD50Q92878 1312 aa17.69■□□□□ 0.42
PHRF1-203ENST00000416188 CTNNA2P26232 953 aa17.69■□□□□ 0.42
PHRF1-203ENST00000416188 SMC5Q8IY18 1101 aa17.69■□□□□ 0.42
PHRF1-203ENST00000416188 PAGR1Q9BTK6 254 aa17.69■□□□□ 0.42
PHRF1-203ENST00000416188 TAOK3Q9H2K8 898 aa17.69■□□□□ 0.42
PHRF1-203ENST00000416188 RMND1Q9NWS8 449 aa17.69■□□□□ 0.42
PHRF1-203ENST00000416188 PNMA6EA0A0J9YXQ4 647 aa17.69■□□□□ 0.42
PHRF1-203ENST00000416188 PRAMEF22A3QJZ6 481 aa17.69■□□□□ 0.42
PHRF1-203ENST00000416188 ERVV-1B6SEH8 477 aa17.69■□□□□ 0.42
PHRF1-203ENST00000416188 C21orf2O43822 256 aa17.69■□□□□ 0.42
PHRF1-203ENST00000416188 CCDC129Q6ZRS4 1044 aa17.69■□□□□ 0.42
PHRF1-203ENST00000416188 MASTLQ96GX5 879 aa17.69■□□□□ 0.42
PHRF1-203ENST00000416188 TCHPQ9BT92 498 aa17.69■□□□□ 0.42
PHRF1-203ENST00000416188 NAA15Q9BXJ9 866 aaKnown RBP17.69■□□□□ 0.42
PHRF1-203ENST00000416188 KCNQ2O43526 872 aa17.69■□□□□ 0.42
PHRF1-203ENST00000416188 NSMFQ6X4W1 530 aa17.69■□□□□ 0.42
PHRF1-203ENST00000416188 ZNF532Q9HCE3 1301 aa17.69■□□□□ 0.42
PHRF1-203ENST00000416188 PTPDC1A2A3K4 754 aa17.68■□□□□ 0.42
PHRF1-203ENST00000416188 HOOK3Q86VS8 718 aa17.68■□□□□ 0.42
PHRF1-203ENST00000416188 PKD2L1Q9P0L9 805 aa17.68■□□□□ 0.42
PHRF1-203ENST00000416188 SKILP12757 684 aa17.68■□□□□ 0.42
PHRF1-203ENST00000416188 APOBRQ0VD83 1088 aa17.68■□□□□ 0.42
PHRF1-203ENST00000416188 CREB3L3Q68CJ9 461 aa17.68■□□□□ 0.42
PHRF1-203ENST00000416188 NDUFB9Q9Y6M9 179 aa17.68■□□□□ 0.42
PHRF1-203ENST00000416188 B4E1Z4 1266 aa17.68■□□□□ 0.42
PHRF1-203ENST00000416188 RXRAP19793 462 aa17.68■□□□□ 0.42
PHRF1-203ENST00000416188 GADL1Q6ZQY3 521 aa17.68■□□□□ 0.42
PHRF1-203ENST00000416188 AOPEPQ8N6M6 819 aa17.68■□□□□ 0.42
PHRF1-203ENST00000416188 SPAG5Q96R06 1193 aa17.68■□□□□ 0.42
PHRF1-203ENST00000416188 PABPC4Q13310 644 aaKnown RBP eCLIP17.67■□□□□ 0.42
PHRF1-203ENST00000416188 CLRN2A0PK11 232 aa17.67■□□□□ 0.42
PHRF1-203ENST00000416188 SPTLC2O15270 562 aa17.67■□□□□ 0.42
PHRF1-203ENST00000416188 HOMER2Q9NSB8 354 aa17.67■□□□□ 0.42
PHRF1-203ENST00000416188 CRB1P82279 1406 aa17.67■□□□□ 0.42
PHRF1-203ENST00000416188 UBE4AQ14139 1066 aa17.67■□□□□ 0.42
PHRF1-203ENST00000416188 RNF216Q9NWF9 866 aaPredicted RBP17.67■□□□□ 0.42
PHRF1-203ENST00000416188 PUF60Q9UHX1 559 aaKnown RBP17.67■□□□□ 0.42
PHRF1-203ENST00000416188 CAMSAP1Q5T5Y3 1602 aa17.67■□□□□ 0.42
PHRF1-203ENST00000416188 TRIM75PA6NK02 468 aa17.66■□□□□ 0.42
PHRF1-203ENST00000416188 CHMLP26374 656 aa17.66■□□□□ 0.42
PHRF1-203ENST00000416188 RBM28Q9NW13 759 aaKnown RBP17.66■□□□□ 0.42
PHRF1-203ENST00000416188 SLC5A4Q9NY91 659 aa17.66■□□□□ 0.42
PHRF1-203ENST00000416188 ALKQ9UM73 1620 aa17.66■□□□□ 0.42
PHRF1-203ENST00000416188 SEC24BO95487 1268 aa17.66■□□□□ 0.42
PHRF1-203ENST00000416188 ADRA2BP18089 450 aa17.66■□□□□ 0.42
PHRF1-203ENST00000416188 CIAPIN1Q6FI81 312 aa17.66■□□□□ 0.42
PHRF1-203ENST00000416188 DHX32Q7L7V1 743 aaKnown RBP17.66■□□□□ 0.42
PHRF1-203ENST00000416188 KBTBD3Q8NAB2 608 aa17.66■□□□□ 0.42
PHRF1-203ENST00000416188 DHX58Q96C10 678 aa17.66■□□□□ 0.42
PHRF1-203ENST00000416188 ATG3Q9NT62 314 aa17.66■□□□□ 0.42
PHRF1-203ENST00000416188 ZMYND15Q9H091 742 aa17.66■□□□□ 0.42
PHRF1-203ENST00000416188 ARHGEF6Q15052 776 aa17.66■□□□□ 0.42
PHRF1-203ENST00000416188 CCDC174Q6PII3 467 aa17.66■□□□□ 0.42
PHRF1-203ENST00000416188 SEC31BQ9NQW1 1179 aa17.66■□□□□ 0.42
PHRF1-203ENST00000416188 CLTCQ00610 1675 aaKnown RBP17.66■□□□□ 0.42
PHRF1-203ENST00000416188 CCDC91Q7Z6B0 441 aa17.65■□□□□ 0.42
PHRF1-203ENST00000416188 CALRP27797 417 aaKnown RBP17.65■□□□□ 0.42
PHRF1-203ENST00000416188 ASIC1P78348 528 aa17.65■□□□□ 0.42
PHRF1-203ENST00000416188 BEND3Q5T5X7 828 aa17.65■□□□□ 0.42
PHRF1-203ENST00000416188 LRRC24Q50LG9 513 aa17.65■□□□□ 0.42
PHRF1-203ENST00000416188 BTDP43251 543 aa17.65■□□□□ 0.42
PHRF1-203ENST00000416188 SUPT20HL1Q3ZLR7 823 aa17.65■□□□□ 0.42
PHRF1-203ENST00000416188 CLEC4GQ6UXB4 293 aa17.65■□□□□ 0.42
PHRF1-203ENST00000416188 NLRP10Q86W26 655 aa17.65■□□□□ 0.42
PHRF1-203ENST00000416188 NARFQ9UHQ1 456 aa17.65■□□□□ 0.42
PHRF1-203ENST00000416188 ZHX1Q9UKY1 873 aaPredicted RBP17.65■□□□□ 0.42
PHRF1-203ENST00000416188 POTEB2H3BUK9 544 aa17.65■□□□□ 0.42
PHRF1-203ENST00000416188 NOP56O00567 594 aaKnown RBP17.64■□□□□ 0.41
PHRF1-203ENST00000416188 MYCLP12524 364 aaPredicted RBP17.64■□□□□ 0.41
PHRF1-203ENST00000416188 USP44Q9H0E7 712 aa17.64■□□□□ 0.41
PHRF1-203ENST00000416188 PSMA7O14818 248 aa17.64■□□□□ 0.41
PHRF1-203ENST00000416188 SPAG1Q07617 926 aa17.64■□□□□ 0.41
PHRF1-203ENST00000416188 UBE2Q2Q8WVN8 375 aa17.64■□□□□ 0.41
PHRF1-203ENST00000416188 DNAI1Q9UI46 699 aa17.64■□□□□ 0.41
PHRF1-203ENST00000416188 DIP2CQ9Y2E4 1556 aa17.64■□□□□ 0.41
PHRF1-203ENST00000416188 CPA1P15085 419 aa17.64■□□□□ 0.41
PHRF1-203ENST00000416188 TTC12Q9H892 705 aaPredicted RBP17.64■□□□□ 0.41
PHRF1-203ENST00000416188 KDM4FA0A1W2PPD8 638 aa17.64■□□□□ 0.41
PHRF1-203ENST00000416188 CTAGE1Q96RT6 745 aa17.64■□□□□ 0.41
PHRF1-203ENST00000416188 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.64■□□□□ 0.411e-7■■■■□ 21.8
PHRF1-203ENST00000416188 PTGS1P23219 599 aa17.63■□□□□ 0.41
PHRF1-203ENST00000416188 NOLC1Q14978 699 aaKnown RBP eCLIP17.63■□□□□ 0.41
PHRF1-203ENST00000416188 ARMC9Q7Z3E5 817 aa17.63■□□□□ 0.41
PHRF1-203ENST00000416188 PAXBP1Q9Y5B6 917 aa17.63■□□□□ 0.41
PHRF1-203ENST00000416188 GOLGA6L10A0A0M3HER8 536 aa17.63■□□□□ 0.41
PHRF1-203ENST00000416188 GCOM1H8Y6P7 765 aaPredicted RBP17.63■□□□□ 0.41
PHRF1-203ENST00000416188 MYZAPP0CAP1 466 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms