RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 FMR1Q06787 632 aaKnown RBP eCLIP11.42□□□□□ -0.58
SS18-203ENST00000415083 METTL24Q5JXM2 366 aa11.42□□□□□ -0.58
SS18-203ENST00000415083 CMTR1Q8N1G2 835 aaKnown RBP11.42□□□□□ -0.58
SS18-203ENST00000415083 TAOK2Q9UL54 1235 aa11.42□□□□□ -0.58
SS18-203ENST00000415083 BCL9LQ86UU0 1499 aa11.42□□□□□ -0.58
SS18-203ENST00000415083 CICQ96RK0 1608 aaPredicted RBP11.42□□□□□ -0.58
SS18-203ENST00000415083 SMC2O95347 1197 aa11.42□□□□□ -0.58
SS18-203ENST00000415083 SYT10Q6XYQ8 523 aa11.42□□□□□ -0.58
SS18-203ENST00000415083 LDHAL6AQ6ZMR3 332 aa11.42□□□□□ -0.58
SS18-203ENST00000415083 USP49Q70CQ1 688 aa11.42□□□□□ -0.58
SS18-203ENST00000415083 MICU3Q86XE3 530 aa11.42□□□□□ -0.58
SS18-203ENST00000415083 IKBKBO14920 756 aa11.42□□□□□ -0.58
SS18-203ENST00000415083 PPP6R2O75170 966 aa11.42□□□□□ -0.58
SS18-203ENST00000415083 PDE8BO95263 885 aa11.42□□□□□ -0.58
SS18-203ENST00000415083 CYP19A1P11511 503 aaPredicted RBP11.42□□□□□ -0.58
SS18-203ENST00000415083 METAP2P50579 478 aaKnown RBP eCLIP11.42□□□□□ -0.58
SS18-203ENST00000415083 GORABQ5T7V8 394 aa11.42□□□□□ -0.58
SS18-203ENST00000415083 SGMS1Q86VZ5 419 aa11.42□□□□□ -0.58
SS18-203ENST00000415083 TIGD1Q96MW7 591 aa11.42□□□□□ -0.58
SS18-203ENST00000415083 NID2Q14112 1375 aa11.42□□□□□ -0.58
SS18-203ENST00000415083 H2AFXP16104 143 aaPredicted RBP11.41□□□□□ -0.58
SS18-203ENST00000415083 UBE3CQ15386 1083 aa11.41□□□□□ -0.58
SS18-203ENST00000415083 CADPS2Q86UW7 1296 aa11.41□□□□□ -0.58
SS18-203ENST00000415083 GRAMD1CQ8IYS0 662 aa11.41□□□□□ -0.58
SS18-203ENST00000415083 FEZ1Q99689 392 aa11.41□□□□□ -0.58
SS18-203ENST00000415083 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.41□□□□□ -0.58
SS18-203ENST00000415083 FANCLQ9NW38 375 aa11.41□□□□□ -0.58
SS18-203ENST00000415083 GSG1L2A8MUP6 293 aa11.41□□□□□ -0.58
SS18-203ENST00000415083 SYKP43405 635 aa11.41□□□□□ -0.58
SS18-203ENST00000415083 TBX2Q13207 712 aaPredicted RBP11.41□□□□□ -0.58
SS18-203ENST00000415083 ERCC6LQ2NKX8 1250 aa11.41□□□□□ -0.58
SS18-203ENST00000415083 ADGRA1Q86SQ6 560 aa11.41□□□□□ -0.58
SS18-203ENST00000415083 STRN4Q9NRL3 753 aa11.41□□□□□ -0.58
SS18-203ENST00000415083 ZBTB1Q9Y2K1 713 aa11.41□□□□□ -0.58
SS18-203ENST00000415083 PCDHA5Q9Y5H7 936 aa11.41□□□□□ -0.58
SS18-203ENST00000415083 MYH2Q9UKX2 1941 aa11.41□□□□□ -0.58
SS18-203ENST00000415083 STRCQ7RTU9 1775 aa11.41□□□□□ -0.58
SS18-203ENST00000415083 CACNA1SQ13698 1873 aa11.41□□□□□ -0.58
SS18-203ENST00000415083 A0A087X0B3 334 aa11.41□□□□□ -0.58
SS18-203ENST00000415083 RASGRF1Q13972 1273 aa11.41□□□□□ -0.58
SS18-203ENST00000415083 HSP90AA4PQ58FG1 418 aa11.41□□□□□ -0.58
SS18-203ENST00000415083 EARS2Q5JPH6 523 aaKnown RBP11.41□□□□□ -0.58
SS18-203ENST00000415083 OXER1Q8TDS5 423 aa11.41□□□□□ -0.58
SS18-203ENST00000415083 KCNJ14Q9UNX9 436 aa11.41□□□□□ -0.58
SS18-203ENST00000415083 MYH14Q7Z406 1995 aaKnown RBP11.41□□□□□ -0.58
SS18-203ENST00000415083 BAZ2AQ9UIF9 1905 aaKnown RBP11.4□□□□□ -0.58
SS18-203ENST00000415083 A0A0U1RQJ8 604 aa11.4□□□□□ -0.58
SS18-203ENST00000415083 FAM205CA6NFA0 338 aa11.4□□□□□ -0.58
SS18-203ENST00000415083 BTBD18B2RXH4 712 aa11.4□□□□□ -0.58
SS18-203ENST00000415083 IDH1O75874 414 aaKnown RBP11.4□□□□□ -0.58
SS18-203ENST00000415083 KCNJ6P48051 423 aa11.4□□□□□ -0.58
SS18-203ENST00000415083 GSDMDP57764 484 aa11.4□□□□□ -0.58
SS18-203ENST00000415083 EVX2Q03828 476 aa11.4□□□□□ -0.58
SS18-203ENST00000415083 ATRIPQ8WXE1 791 aa11.4□□□□□ -0.58
SS18-203ENST00000415083 NAT10Q9H0A0 1025 aaKnown RBP11.4□□□□□ -0.58
SS18-203ENST00000415083 CGNQ9P2M7 1197 aaKnown RBP11.4□□□□□ -0.58
SS18-203ENST00000415083 FBXO2Q9UK22 296 aaPredicted RBP11.4□□□□□ -0.58
SS18-203ENST00000415083 DLEC1Q9Y238 1755 aa11.4□□□□□ -0.58
SS18-203ENST00000415083 DISP2A7MBM2 1401 aa11.4□□□□□ -0.58
SS18-203ENST00000415083 A0A0U1RQG5 324 aaPredicted RBP11.4□□□□□ -0.58
SS18-203ENST00000415083 PSDA5PKW4 1024 aaPredicted RBP11.4□□□□□ -0.58
SS18-203ENST00000415083 ADAMTS3O15072 1205 aa11.4□□□□□ -0.58
SS18-203ENST00000415083 RALYLQ86SE5 291 aaKnown RBP11.4□□□□□ -0.58
SS18-203ENST00000415083 VSTM4Q8IW00 320 aa11.4□□□□□ -0.58
SS18-203ENST00000415083 IFNL3Q8IZI9 196 aa11.4□□□□□ -0.58
SS18-203ENST00000415083 ERO1AQ96HE7 468 aa11.4□□□□□ -0.58
SS18-203ENST00000415083 ZKSCAN3Q9BRR0 538 aa11.4□□□□□ -0.58
SS18-203ENST00000415083 BCL9O00512 1426 aa11.4□□□□□ -0.58
SS18-203ENST00000415083 VWA3AA6NCI4 1184 aa11.4□□□□□ -0.59
SS18-203ENST00000415083 IRS4O14654 1257 aaPredicted RBP11.4□□□□□ -0.59
SS18-203ENST00000415083 CPLX1O14810 134 aa11.4□□□□□ -0.59
SS18-203ENST00000415083 NPHP1O15259 732 aa11.4□□□□□ -0.59
SS18-203ENST00000415083 SARSP49591 514 aaKnown RBP11.4□□□□□ -0.59
SS18-203ENST00000415083 ZNF827Q17R98 1081 aa11.4□□□□□ -0.59
SS18-203ENST00000415083 NOM1Q5C9Z4 860 aaKnown RBP11.4□□□□□ -0.59
SS18-203ENST00000415083 KRBA2Q6ZNG9 492 aa11.4□□□□□ -0.59
SS18-203ENST00000415083 APTXQ7Z2E3 356 aaKnown RBP11.4□□□□□ -0.59
SS18-203ENST00000415083 RGS22Q8NE09 1264 aa11.4□□□□□ -0.59
SS18-203ENST00000415083 GTPBP4Q9BZE4 634 aaKnown RBP11.4□□□□□ -0.59
SS18-203ENST00000415083 EPC1Q9H2F5 836 aa11.4□□□□□ -0.59
SS18-203ENST00000415083 ARMT1Q9H993 441 aa11.4□□□□□ -0.59
SS18-203ENST00000415083 COL1A1P02452 1464 aaPredicted RBP11.39□□□□□ -0.59
SS18-203ENST00000415083 ZNF18P17022 549 aa11.39□□□□□ -0.59
SS18-203ENST00000415083 HSPA2P54652 639 aa11.39□□□□□ -0.59
SS18-203ENST00000415083 NR5A1Q13285 461 aa11.39□□□□□ -0.59
SS18-203ENST00000415083 ALX1Q15699 326 aa11.39□□□□□ -0.59
SS18-203ENST00000415083 LCORLQ8N3X6 602 aa11.39□□□□□ -0.59
SS18-203ENST00000415083 WNK3Q9BYP7 1800 aa11.39□□□□□ -0.59
SS18-203ENST00000415083 TMOD3Q9NYL9 352 aa11.39□□□□□ -0.59
SS18-203ENST00000415083 FHOD1Q9Y613 1164 aa11.39□□□□□ -0.59
SS18-203ENST00000415083 COL22A1Q8NFW1 1626 aaPredicted RBP11.39□□□□□ -0.59
SS18-203ENST00000415083 DHX16O60231 1041 aaKnown RBP11.39□□□□□ -0.59
SS18-203ENST00000415083 SLU7O95391 586 aaKnown RBP11.39□□□□□ -0.59
SS18-203ENST00000415083 SYNE3Q6ZMZ3 975 aa11.39□□□□□ -0.59
SS18-203ENST00000415083 ZNF397Q8NF99 534 aaPredicted RBP11.39□□□□□ -0.59
SS18-203ENST00000415083 MAN1B1Q9UKM7 699 aa11.39□□□□□ -0.59
SS18-203ENST00000415083 PCDHB6Q9Y5E3 794 aa11.39□□□□□ -0.59
SS18-203ENST00000415083 DOT1LQ8TEK3 1739 aa11.39□□□□□ -0.59
SS18-203ENST00000415083 FMNL1O95466 1100 aaPredicted RBP11.38□□□□□ -0.59
SS18-203ENST00000415083 ZBTB43O43298 467 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 107.2 ms