RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 USP17L12C9JPN9 530 aa16.95■□□□□ 0.3
SF3B1-204ENST00000414963 USP17L21D6R901 530 aa16.95■□□□□ 0.3
SF3B1-204ENST00000414963 MYO1BO43795 1136 aa16.95■□□□□ 0.3
SF3B1-204ENST00000414963 ENTPD3O75355 529 aa16.95■□□□□ 0.3
SF3B1-204ENST00000414963 C12orf60Q5U649 245 aa16.95■□□□□ 0.3
SF3B1-204ENST00000414963 MAPKAPK5Q8IW41 473 aa16.95■□□□□ 0.3
SF3B1-204ENST00000414963 DDX4Q9NQI0 724 aaKnown RBP16.95■□□□□ 0.3
SF3B1-204ENST00000414963 MCM9Q9NXL9 1143 aa16.95■□□□□ 0.3
SF3B1-204ENST00000414963 FAM198AQ9UFP1 575 aa16.95■□□□□ 0.3
SF3B1-204ENST00000414963 FGRP09769 529 aa16.94■□□□□ 0.3
SF3B1-204ENST00000414963 EPS15P42566 896 aa16.94■□□□□ 0.3
SF3B1-204ENST00000414963 PPARAQ07869 468 aa16.94■□□□□ 0.3
SF3B1-204ENST00000414963 NFIAQ12857 509 aa16.94■□□□□ 0.3
SF3B1-204ENST00000414963 KIF4BQ2VIQ3 1234 aa16.94■□□□□ 0.3
SF3B1-204ENST00000414963 NBPF9Q3BBW0 867 aa16.94■□□□□ 0.3
SF3B1-204ENST00000414963 SAMD7Q7Z3H4 446 aa16.94■□□□□ 0.3
SF3B1-204ENST00000414963 NBPF3Q9H094 633 aa16.94■□□□□ 0.3
SF3B1-204ENST00000414963 OSBPL5Q9H0X9 879 aaPredicted RBP16.94■□□□□ 0.3
SF3B1-204ENST00000414963 ADARB2Q9NS39 739 aaKnown RBP16.94■□□□□ 0.3
SF3B1-204ENST00000414963 TMOD2Q9NZR1 351 aa16.94■□□□□ 0.3
SF3B1-204ENST00000414963 TAOK2Q9UL54 1235 aa16.94■□□□□ 0.3
SF3B1-204ENST00000414963 TAF6LQ9Y6J9 622 aa16.94■□□□□ 0.3
SF3B1-204ENST00000414963 EGFRP00533 1210 aa16.93■□□□□ 0.3
SF3B1-204ENST00000414963 PCP11498 1178 aaKnown RBP16.93■□□□□ 0.3
SF3B1-204ENST00000414963 LMOD1P29536 600 aaPredicted RBP16.93■□□□□ 0.3
SF3B1-204ENST00000414963 RABEP1Q15276 862 aa16.93■□□□□ 0.3
SF3B1-204ENST00000414963 TBC1D10BQ4KMP7 808 aaPredicted RBP16.93■□□□□ 0.3
SF3B1-204ENST00000414963 FAM83AQ86UY5 434 aa16.93■□□□□ 0.3
SF3B1-204ENST00000414963 RBM19Q9Y4C8 960 aaKnown RBP16.93■□□□□ 0.3
SF3B1-204ENST00000414963 COL2A1P02458 1487 aaPredicted RBP16.93■□□□□ 0.3
SF3B1-204ENST00000414963 MINDY4BA8MYZ0 360 aa16.92■□□□□ 0.3
SF3B1-204ENST00000414963 E7EWF7 191 aa16.92■□□□□ 0.3
SF3B1-204ENST00000414963 PSMA5P28066 241 aa16.92■□□□□ 0.3
SF3B1-204ENST00000414963 HAND2P61296 217 aa16.92■□□□□ 0.3
SF3B1-204ENST00000414963 RBM26Q5T8P6 1007 aaKnown RBP16.92■□□□□ 0.3
SF3B1-204ENST00000414963 STOX1Q6ZVD7 989 aa16.92■□□□□ 0.3
SF3B1-204ENST00000414963 AMOTL1Q8IY63 956 aa16.92■□□□□ 0.3
SF3B1-204ENST00000414963 STAG1Q8WVM7 1258 aa16.92■□□□□ 0.3
SF3B1-204ENST00000414963 DHX36Q9H2U1 1008 aaKnown RBP16.92■□□□□ 0.3
SF3B1-204ENST00000414963 ZSWIM6Q9HCJ5 1215 aa16.92■□□□□ 0.3
SF3B1-204ENST00000414963 ATRNL1Q5VV63 1379 aa16.91■□□□□ 0.3
SF3B1-204ENST00000414963 ROBO3Q96MS0 1386 aa16.91■□□□□ 0.3
SF3B1-204ENST00000414963 CYP2D7A0A087X1C5 515 aa16.91■□□□□ 0.3
SF3B1-204ENST00000414963 SLC3A2P08195 630 aaKnown RBP16.91■□□□□ 0.3
SF3B1-204ENST00000414963 NT5C2P49902 561 aa16.91■□□□□ 0.3
SF3B1-204ENST00000414963 CACNB3P54284 484 aa16.91■□□□□ 0.3
SF3B1-204ENST00000414963 PICALMQ13492 652 aa16.91■□□□□ 0.3
SF3B1-204ENST00000414963 ADCK5Q3MIX3 580 aa16.91■□□□□ 0.3
SF3B1-204ENST00000414963 AKNAD1Q5T1N1 836 aa16.91■□□□□ 0.3
SF3B1-204ENST00000414963 TTC6Q86TZ1 520 aa16.91■□□□□ 0.3
SF3B1-204ENST00000414963 TBC1D10CQ8IV04 446 aa16.91■□□□□ 0.3
SF3B1-204ENST00000414963 ZFPM1Q8IX07 1006 aa16.91■□□□□ 0.3
SF3B1-204ENST00000414963 TRPM4Q8TD43 1214 aa16.91■□□□□ 0.3
SF3B1-204ENST00000414963 FAM151AQ8WW52 585 aa16.91■□□□□ 0.3
SF3B1-204ENST00000414963 RNF41Q9H4P4 317 aaPredicted RBP16.91■□□□□ 0.3
SF3B1-204ENST00000414963 HACL1Q9UJ83 578 aa16.91■□□□□ 0.3
SF3B1-204ENST00000414963 FOCADQ5VW36 1801 aa16.91■□□□□ 0.3
SF3B1-204ENST00000414963 CNTNAP1P78357 1384 aa16.9■□□□□ 0.3
SF3B1-204ENST00000414963 UTRNP46939 3433 aa16.9■□□□□ 0.3
SF3B1-204ENST00000414963 CLRN2A0PK11 232 aa16.9■□□□□ 0.3
SF3B1-204ENST00000414963 POLR3DP05423 398 aaPredicted RBP16.9■□□□□ 0.3
SF3B1-204ENST00000414963 HMGB1P09429 215 aaKnown RBP16.9■□□□□ 0.3
SF3B1-204ENST00000414963 CYP2D6P10635 497 aa16.9■□□□□ 0.3
SF3B1-204ENST00000414963 PLCD1P51178 756 aa16.9■□□□□ 0.3
SF3B1-204ENST00000414963 HIRAP54198 1017 aaPredicted RBP16.9■□□□□ 0.3
SF3B1-204ENST00000414963 JAKMIP1Q96N16 626 aaKnown RBP16.9■□□□□ 0.3
SF3B1-204ENST00000414963 NEK1Q96PY6 1258 aa16.9■□□□□ 0.3
SF3B1-204ENST00000414963 EHD4Q9H223 541 aa16.9■□□□□ 0.3
SF3B1-204ENST00000414963 CNNM2Q9H8M5 875 aa16.9■□□□□ 0.3
SF3B1-204ENST00000414963 SAP30BPQ9UHR5 308 aaKnown RBP16.9■□□□□ 0.3
SF3B1-204ENST00000414963 CDK5RAP2Q96SN8 1893 aa16.9■□□□□ 0.3
SF3B1-204ENST00000414963 DDX60LQ5H9U9 1706 aaKnown RBP16.9■□□□□ 0.3
SF3B1-204ENST00000414963 ECM29Q5VYK3 1845 aa16.89■□□□□ 0.29
SF3B1-204ENST00000414963 IQCA1LA6NCM1 817 aa16.89■□□□□ 0.29
SF3B1-204ENST00000414963 ORC4O43929 436 aa16.89■□□□□ 0.29
SF3B1-204ENST00000414963 CTDSPL2Q05D32 466 aa16.89■□□□□ 0.29
SF3B1-204ENST00000414963 TNFAIP1Q13829 316 aa16.89■□□□□ 0.29
SF3B1-204ENST00000414963 MFSD6Q6ZSS7 791 aa16.89■□□□□ 0.29
SF3B1-204ENST00000414963 USP50Q70EL3 339 aaPredicted RBP16.89■□□□□ 0.29
SF3B1-204ENST00000414963 SH3BP5LQ7L8J4 393 aa16.89■□□□□ 0.29
SF3B1-204ENST00000414963 METTL16Q86W50 562 aaKnown RBP16.89■□□□□ 0.29
SF3B1-204ENST00000414963 PGAP2Q9UHJ9 254 aa16.89■□□□□ 0.29
SF3B1-204ENST00000414963 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.89■□□□□ 0.29
SF3B1-204ENST00000414963 TACC3Q9Y6A5 838 aa16.89■□□□□ 0.29
SF3B1-204ENST00000414963 LAMA4Q16363 1823 aa16.89■□□□□ 0.29
SF3B1-204ENST00000414963 POTECB2RU33 542 aa16.88■□□□□ 0.29
SF3B1-204ENST00000414963 TCP10L2B9ZVM9 353 aa16.88■□□□□ 0.29
SF3B1-204ENST00000414963 SMIM22K7EJ46 135 aa16.88■□□□□ 0.29
SF3B1-204ENST00000414963 EPHX2P34913 555 aa16.88■□□□□ 0.29
SF3B1-204ENST00000414963 TNNI2P48788 182 aa16.88■□□□□ 0.29
SF3B1-204ENST00000414963 GABPAQ06546 454 aa16.88■□□□□ 0.29
SF3B1-204ENST00000414963 TCP10Q12799 353 aa16.88■□□□□ 0.29
SF3B1-204ENST00000414963 RUFY3Q7L099 469 aa16.88■□□□□ 0.29
SF3B1-204ENST00000414963 FOXP4Q8IVH2 680 aaPredicted RBP16.88■□□□□ 0.29
SF3B1-204ENST00000414963 NCOA7Q8NI08 942 aa16.88■□□□□ 0.29
SF3B1-204ENST00000414963 ZC3H15Q8WU90 426 aaKnown RBP16.88■□□□□ 0.29
SF3B1-204ENST00000414963 KRT23Q9C075 422 aa16.88■□□□□ 0.29
SF3B1-204ENST00000414963 ALDH8A1Q9H2A2 487 aaPredicted RBP16.88■□□□□ 0.29
SF3B1-204ENST00000414963 VEZTQ9HBM0 779 aa16.88■□□□□ 0.29
SF3B1-204ENST00000414963 PI4KBQ9UBF8 816 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms