RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 RAI14Q9P0K7 980 aa15.82■□□□□ 0.12
LIMS1-205ENST00000410093 CCDC39Q9UFE4 941 aa15.82■□□□□ 0.12
LIMS1-205ENST00000410093 CCDC69A6NI79 296 aa15.81■□□□□ 0.12
LIMS1-205ENST00000410093 B4E1Z4 1266 aa15.81■□□□□ 0.12
LIMS1-205ENST00000410093 YEATS4O95619 227 aa15.81■□□□□ 0.12
LIMS1-205ENST00000410093 HIBADHP31937 336 aaKnown RBP15.81■□□□□ 0.12
LIMS1-205ENST00000410093 ADD1P35611 737 aaKnown RBP15.81■□□□□ 0.12
LIMS1-205ENST00000410093 TGFB2P61812 414 aa15.81■□□□□ 0.12
LIMS1-205ENST00000410093 BICD2Q8TD16 824 aa15.81■□□□□ 0.12
LIMS1-205ENST00000410093 KCNG4Q8TDN1 519 aa15.81■□□□□ 0.12
LIMS1-205ENST00000410093 CELF1Q92879 486 aaKnown RBP15.81■□□□□ 0.12
LIMS1-205ENST00000410093 CLSTN2Q9H4D0 955 aa15.81■□□□□ 0.12
LIMS1-205ENST00000410093 LY9Q9HBG7 655 aa15.81■□□□□ 0.12
LIMS1-205ENST00000410093 POLR3EQ9NVU0 708 aa15.81■□□□□ 0.12
LIMS1-205ENST00000410093 TFIP11Q9UBB9 837 aaKnown RBP15.81■□□□□ 0.12
LIMS1-205ENST00000410093 SLC12A7Q9Y666 1083 aa15.81■□□□□ 0.12
LIMS1-205ENST00000410093 TAF1P21675 1872 aa15.81■□□□□ 0.12
LIMS1-205ENST00000410093 A0A1W2PQ27 194 aa15.8■□□□□ 0.12
LIMS1-205ENST00000410093 A0A1W2PQ64 194 aa15.8■□□□□ 0.12
LIMS1-205ENST00000410093 A0A1W2PQD8 194 aa15.8■□□□□ 0.12
LIMS1-205ENST00000410093 IFIT3O14879 490 aaKnown RBP15.8■□□□□ 0.12
LIMS1-205ENST00000410093 YBX3P16989 372 aaKnown RBP eCLIP15.8■□□□□ 0.125e-7■□□□□ 9.2
LIMS1-205ENST00000410093 NFXL1Q6ZNB6 911 aa15.8■□□□□ 0.12
LIMS1-205ENST00000410093 BICDL1Q6ZP65 573 aa15.8■□□□□ 0.12
LIMS1-205ENST00000410093 C15orf52Q6ZUT6 534 aaKnown RBP15.8■□□□□ 0.12
LIMS1-205ENST00000410093 CYB5R4Q7L1T6 521 aa15.8■□□□□ 0.12
LIMS1-205ENST00000410093 ZSCAN30Q86W11 494 aa15.8■□□□□ 0.12
LIMS1-205ENST00000410093 LCORLQ8N3X6 602 aa15.8■□□□□ 0.12
LIMS1-205ENST00000410093 ESR2Q92731 530 aa15.8■□□□□ 0.12
LIMS1-205ENST00000410093 ZSWIM5Q9P217 1185 aa15.8■□□□□ 0.12
LIMS1-205ENST00000410093 GYG1P46976 350 aa15.79■□□□□ 0.12
LIMS1-205ENST00000410093 TRIM29Q14134 588 aa15.79■□□□□ 0.12
LIMS1-205ENST00000410093 CCDC73Q6ZRK6 1079 aa15.79■□□□□ 0.12
LIMS1-205ENST00000410093 C3orf67Q6ZVT6 689 aa15.79■□□□□ 0.12
LIMS1-205ENST00000410093 ABCF2Q9UG63 623 aa15.79■□□□□ 0.12
LIMS1-205ENST00000410093 NEDD4P46934 1319 aa15.79■□□□□ 0.12
LIMS1-205ENST00000410093 NPHP1O15259 732 aa15.78■□□□□ 0.12
LIMS1-205ENST00000410093 SLC3A2P08195 630 aaKnown RBP15.78■□□□□ 0.12
LIMS1-205ENST00000410093 IARSP41252 1262 aaKnown RBP15.78■□□□□ 0.12
LIMS1-205ENST00000410093 PPARAQ07869 468 aa15.78■□□□□ 0.12
LIMS1-205ENST00000410093 GRAPQ13588 217 aa15.78■□□□□ 0.12
LIMS1-205ENST00000410093 WTAPQ15007 396 aa15.78■□□□□ 0.12
LIMS1-205ENST00000410093 FAM173BQ6P4H8 233 aa15.78■□□□□ 0.12
LIMS1-205ENST00000410093 GRAPLQ8TC17 118 aaPredicted RBP15.78■□□□□ 0.12
LIMS1-205ENST00000410093 PGBD1Q96JS3 809 aa15.78■□□□□ 0.12
LIMS1-205ENST00000410093 RIOK1Q9BRS2 568 aaKnown RBP15.78■□□□□ 0.12
LIMS1-205ENST00000410093 ATP8A2Q9NTI2 1148 aa15.78■□□□□ 0.12
LIMS1-205ENST00000410093 DACT1Q9NYF0 836 aa15.78■□□□□ 0.12
LIMS1-205ENST00000410093 DLEC1Q9Y238 1755 aa15.78■□□□□ 0.12
LIMS1-205ENST00000410093 GOLGA8AA7E2F4 631 aa15.78■□□□□ 0.12
LIMS1-205ENST00000410093 SNAP23O00161 211 aa15.78■□□□□ 0.12
LIMS1-205ENST00000410093 KDM4AO75164 1064 aa15.78■□□□□ 0.12
LIMS1-205ENST00000410093 COL4A1P02462 1669 aa15.78■□□□□ 0.12
LIMS1-205ENST00000410093 LAMB1P07942 1786 aa15.78■□□□□ 0.12
LIMS1-205ENST00000410093 FGRP09769 529 aa15.78■□□□□ 0.12
LIMS1-205ENST00000410093 IFNAR1P17181 557 aa15.78■□□□□ 0.12
LIMS1-205ENST00000410093 LIG1P18858 919 aa15.78■□□□□ 0.12
LIMS1-205ENST00000410093 MSNP26038 577 aaKnown RBP15.78■□□□□ 0.12
LIMS1-205ENST00000410093 TM4SF1P30408 202 aa15.78■□□□□ 0.12
LIMS1-205ENST00000410093 GOLGB1Q14789 3259 aaKnown RBP15.78■□□□□ 0.12
LIMS1-205ENST00000410093 ADALQ6DHV7 355 aa15.78■□□□□ 0.12
LIMS1-205ENST00000410093 TRIM22Q8IYM9 498 aa15.78■□□□□ 0.12
LIMS1-205ENST00000410093 CNBD1Q8NA66 436 aa15.78■□□□□ 0.12
LIMS1-205ENST00000410093 WDR66Q8TBY9 1149 aa15.78■□□□□ 0.12
LIMS1-205ENST00000410093 TPM3P06753 285 aa15.77■□□□□ 0.11
LIMS1-205ENST00000410093 CALM1P0DP23 149 aa15.77■□□□□ 0.11
LIMS1-205ENST00000410093 CALM2P0DP24 149 aa15.77■□□□□ 0.11
LIMS1-205ENST00000410093 CALM3P0DP25 149 aa15.77■□□□□ 0.11
LIMS1-205ENST00000410093 SSRP1Q08945 709 aaKnown RBP15.77■□□□□ 0.11
LIMS1-205ENST00000410093 SASS6Q6UVJ0 657 aa15.77■□□□□ 0.11
LIMS1-205ENST00000410093 TMC4Q7Z404 712 aa15.77■□□□□ 0.11
LIMS1-205ENST00000410093 JMYQ8N9B5 988 aa15.77■□□□□ 0.11
LIMS1-205ENST00000410093 FAM200AQ8TCP9 573 aa15.77■□□□□ 0.11
LIMS1-205ENST00000410093 UBAC1Q9BSL1 405 aa15.77■□□□□ 0.11
LIMS1-205ENST00000410093 ALG1Q9BT22 464 aa15.77■□□□□ 0.11
LIMS1-205ENST00000410093 CRNKL1Q9BZJ0 848 aaKnown RBP15.77■□□□□ 0.11
LIMS1-205ENST00000410093 GPHNQ9NQX3 736 aaPredicted RBP15.77■□□□□ 0.11
LIMS1-205ENST00000410093 NOL7Q9UMY1 257 aaKnown RBP15.77■□□□□ 0.11
LIMS1-205ENST00000410093 COL1A1P02452 1464 aaPredicted RBP15.76■□□□□ 0.11
LIMS1-205ENST00000410093 XDHP47989 1333 aa15.76■□□□□ 0.11
LIMS1-205ENST00000410093 FMNL1O95466 1100 aaPredicted RBP15.76■□□□□ 0.11
LIMS1-205ENST00000410093 GSTO1P78417 241 aa15.76■□□□□ 0.11
LIMS1-205ENST00000410093 ST5P78524 1137 aa15.76■□□□□ 0.11
LIMS1-205ENST00000410093 FAM160A1Q05DH4 1040 aa15.76■□□□□ 0.11
LIMS1-205ENST00000410093 NTRK3Q16288 839 aa15.76■□□□□ 0.11
LIMS1-205ENST00000410093 RNF214Q8ND24 703 aa15.76■□□□□ 0.11
LIMS1-205ENST00000410093 NSUN4Q96CB9 384 aaKnown RBP15.76■□□□□ 0.11
LIMS1-205ENST00000410093 USP28Q96RU2 1077 aa15.76■□□□□ 0.11
LIMS1-205ENST00000410093 ECM29Q5VYK3 1845 aa15.75■□□□□ 0.11
LIMS1-205ENST00000410093 KINO60870 393 aaKnown RBP15.75■□□□□ 0.11
LIMS1-205ENST00000410093 KIF23Q02241 960 aaPredicted RBP15.75■□□□□ 0.11
LIMS1-205ENST00000410093 CTDSPL2Q05D32 466 aa15.75■□□□□ 0.11
LIMS1-205ENST00000410093 TYRO3Q06418 890 aa15.75■□□□□ 0.11
LIMS1-205ENST00000410093 SF3A1Q15459 793 aaKnown RBP15.75■□□□□ 0.11
LIMS1-205ENST00000410093 SBK1Q52WX2 424 aa15.75■□□□□ 0.11
LIMS1-205ENST00000410093 MYSM1Q5VVJ2 828 aa15.75■□□□□ 0.11
LIMS1-205ENST00000410093 IQCA1Q86XH1 822 aa15.75■□□□□ 0.11
LIMS1-205ENST00000410093 CCAR1Q8IX12 1150 aaKnown RBP15.75■□□□□ 0.11
LIMS1-205ENST00000410093 ARPP21Q9UBL0 812 aaPredicted RBP15.75■□□□□ 0.11
LIMS1-205ENST00000410093 BCS1LQ9Y276 419 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms