RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 VEGFAP15692 232 aaPredicted RBP24.47■■□□□ 1.51
VSX1-203ENST00000409285 PTH1RQ03431 593 aa24.47■■□□□ 1.51
VSX1-203ENST00000409285 RBM26Q5T8P6 1007 aaKnown RBP24.47■■□□□ 1.51
VSX1-203ENST00000409285 FAM83AQ86UY5 434 aa24.47■■□□□ 1.51
VSX1-203ENST00000409285 TGFBRAP1Q8WUH2 860 aa24.47■■□□□ 1.51
VSX1-203ENST00000409285 ATRNL1Q5VV63 1379 aa24.46■■□□□ 1.51
VSX1-203ENST00000409285 USP5P45974 858 aa24.46■■□□□ 1.51
VSX1-203ENST00000409285 NFIAQ12857 509 aa24.46■■□□□ 1.51
VSX1-203ENST00000409285 IFNL3Q8IZI9 196 aa24.46■■□□□ 1.51
VSX1-203ENST00000409285 DDRGK1Q96HY6 314 aa24.46■■□□□ 1.51
VSX1-203ENST00000409285 KIF3CO14782 793 aa24.45■■□□□ 1.51
VSX1-203ENST00000409285 SEC24BO95487 1268 aa24.45■■□□□ 1.51
VSX1-203ENST00000409285 TNFAIP1Q13829 316 aa24.45■■□□□ 1.51
VSX1-203ENST00000409285 DDX4Q9NQI0 724 aaKnown RBP24.45■■□□□ 1.51
VSX1-203ENST00000409285 FAM198AQ9UFP1 575 aa24.45■■□□□ 1.51
VSX1-203ENST00000409285 PGAP2Q9UHJ9 254 aa24.45■■□□□ 1.51
VSX1-203ENST00000409285 U3KPZ7 1027 aaPredicted RBP24.45■■□□□ 1.51
VSX1-203ENST00000409285 CNTNAP1P78357 1384 aa24.45■■□□□ 1.5
VSX1-203ENST00000409285 CLRN2A0PK11 232 aa24.45■■□□□ 1.5
VSX1-203ENST00000409285 FGAP02671 866 aa24.45■■□□□ 1.5
VSX1-203ENST00000409285 APOBEC3FQ8IUX4 373 aaKnown RBP24.45■■□□□ 1.5
VSX1-203ENST00000409285 OSBPL5Q9H0X9 879 aaPredicted RBP24.45■■□□□ 1.5
VSX1-203ENST00000409285 ARPP21Q9UBL0 812 aaPredicted RBP24.45■■□□□ 1.5
VSX1-203ENST00000409285 APPP05067 770 aa24.44■■□□□ 1.5
VSX1-203ENST00000409285 MAPKAPK5Q8IW41 473 aa24.44■■□□□ 1.5
VSX1-203ENST00000409285 USP26Q9BXU7 913 aa24.44■■□□□ 1.5
VSX1-203ENST00000409285 NAPBQ9H115 298 aa24.44■■□□□ 1.5
VSX1-203ENST00000409285 CTNNA3Q9UI47 895 aa24.44■■□□□ 1.5
VSX1-203ENST00000409285 TDO2P48775 406 aa24.43■■□□□ 1.5
VSX1-203ENST00000409285 CACNB3P54284 484 aa24.43■■□□□ 1.5
VSX1-203ENST00000409285 SBK1Q52WX2 424 aa24.43■■□□□ 1.5
VSX1-203ENST00000409285 ANGEL2Q5VTE6 544 aaKnown RBP24.43■■□□□ 1.5
VSX1-203ENST00000409285 GGA3Q9NZ52 723 aa24.43■■□□□ 1.5
VSX1-203ENST00000409285 ROBO3Q96MS0 1386 aa24.42■■□□□ 1.5
VSX1-203ENST00000409285 ASTN2O75129 1339 aaPredicted RBP24.42■■□□□ 1.5
VSX1-203ENST00000409285 TNNI2P48788 182 aa24.42■■□□□ 1.5
VSX1-203ENST00000409285 FAM151AQ8WW52 585 aa24.42■■□□□ 1.5
VSX1-203ENST00000409285 DHX36Q9H2U1 1008 aaKnown RBP24.42■■□□□ 1.5
VSX1-203ENST00000409285 VEZTQ9HBM0 779 aa24.42■■□□□ 1.5
VSX1-203ENST00000409285 RBM8AQ9Y5S9 174 aaKnown RBP24.42■■□□□ 1.5
VSX1-203ENST00000409285 PICALMQ13492 652 aa24.41■■□□□ 1.5
VSX1-203ENST00000409285 NECTIN1Q15223 517 aa24.41■■□□□ 1.5
VSX1-203ENST00000409285 TAOK2Q9UL54 1235 aa24.41■■□□□ 1.5
VSX1-203ENST00000409285 PPP2R3BQ9Y5P8 575 aa24.41■■□□□ 1.5
VSX1-203ENST00000409285 CTR9Q6PD62 1173 aa24.4■■□□□ 1.5
VSX1-203ENST00000409285 MCM9Q9NXL9 1143 aa24.4■■□□□ 1.5
VSX1-203ENST00000409285 TCP10L2B9ZVM9 353 aa24.39■■□□□ 1.5
VSX1-203ENST00000409285 HSPA4P34932 840 aa24.39■■□□□ 1.5
VSX1-203ENST00000409285 AMOTL1Q8IY63 956 aa24.39■■□□□ 1.5
VSX1-203ENST00000409285 TRPM7Q96QT4 1865 aa24.39■■□□□ 1.5
VSX1-203ENST00000409285 ANAPC4Q9UJX5 808 aa24.39■■□□□ 1.5
VSX1-203ENST00000409285 ATAD5Q96QE3 1844 aa24.39■■□□□ 1.49
VSX1-203ENST00000409285 USP17L12C9JPN9 530 aa24.38■■□□□ 1.49
VSX1-203ENST00000409285 USP17L21D6R901 530 aa24.38■■□□□ 1.49
VSX1-203ENST00000409285 IMMTQ16891 758 aaKnown RBP24.38■■□□□ 1.49
VSX1-203ENST00000409285 C12orf60Q5U649 245 aa24.38■■□□□ 1.49
VSX1-203ENST00000409285 UPF2Q9HAU5 1272 aaKnown RBP24.38■■□□□ 1.49
VSX1-203ENST00000409285 PAPPA2Q9BXP8 1791 aa24.38■■□□□ 1.49
VSX1-203ENST00000409285 TOMM70O94826 608 aa24.38■■□□□ 1.49
VSX1-203ENST00000409285 TCP10Q12799 353 aa24.38■■□□□ 1.49
VSX1-203ENST00000409285 KCNB2Q92953 911 aa24.38■■□□□ 1.49
VSX1-203ENST00000409285 DCPSQ96C86 337 aaKnown RBP24.38■■□□□ 1.49
VSX1-203ENST00000409285 EHD4Q9H223 541 aa24.38■■□□□ 1.49
VSX1-203ENST00000409285 RASA3Q14644 834 aa24.37■■□□□ 1.49
VSX1-203ENST00000409285 EAPPQ56P03 285 aaPredicted RBP24.37■■□□□ 1.49
VSX1-203ENST00000409285 RNF20Q5VTR2 975 aa24.37■■□□□ 1.49
VSX1-203ENST00000409285 TTC6Q86TZ1 520 aa24.37■■□□□ 1.49
VSX1-203ENST00000409285 LDHDQ86WU2 507 aa24.37■■□□□ 1.49
VSX1-203ENST00000409285 ZFPM1Q8IX07 1006 aa24.37■■□□□ 1.49
VSX1-203ENST00000409285 DEFB129Q9H1M3 183 aa24.37■■□□□ 1.49
VSX1-203ENST00000409285 PALD1Q9ULE6 856 aa24.37■■□□□ 1.49
VSX1-203ENST00000409285 GREB1LQ9C091 1923 aaPredicted RBP24.36■■□□□ 1.49
VSX1-203ENST00000409285 CYP21A2P08686 494 aa24.36■■□□□ 1.49
VSX1-203ENST00000409285 MCCP23508 829 aa24.36■■□□□ 1.49
VSX1-203ENST00000409285 PPARAQ07869 468 aa24.36■■□□□ 1.49
VSX1-203ENST00000409285 SH3BP5LQ7L8J4 393 aa24.36■■□□□ 1.49
VSX1-203ENST00000409285 METTL16Q86W50 562 aaKnown RBP24.36■■□□□ 1.49
VSX1-203ENST00000409285 TEPSINQ96N21 525 aa24.36■■□□□ 1.49
VSX1-203ENST00000409285 SAP30BPQ9UHR5 308 aaKnown RBP24.36■■□□□ 1.49
VSX1-203ENST00000409285 DDTLA6NHG4 134 aaPredicted RBP24.35■■□□□ 1.49
VSX1-203ENST00000409285 ZNF213O14771 459 aa24.35■■□□□ 1.49
VSX1-203ENST00000409285 POLR3DP05423 398 aaPredicted RBP24.35■■□□□ 1.49
VSX1-203ENST00000409285 HLA-DOAP06340 250 aa24.35■■□□□ 1.49
VSX1-203ENST00000409285 TSGA10IPQ3SY00 556 aa24.35■■□□□ 1.49
VSX1-203ENST00000409285 CREB3L3Q68CJ9 461 aa24.35■■□□□ 1.49
VSX1-203ENST00000409285 SULF1Q8IWU6 871 aa24.35■■□□□ 1.49
VSX1-203ENST00000409285 IL17RAQ96F46 866 aa24.35■■□□□ 1.49
VSX1-203ENST00000409285 TMEM39BQ9GZU3 492 aa24.35■■□□□ 1.49
VSX1-203ENST00000409285 PI4KBQ9UBF8 816 aa24.35■■□□□ 1.49
VSX1-203ENST00000409285 SLC27A2O14975 620 aa24.34■■□□□ 1.49
VSX1-203ENST00000409285 PCP11498 1178 aaKnown RBP24.34■■□□□ 1.49
VSX1-203ENST00000409285 RBM25P49756 843 aaKnown RBP24.34■■□□□ 1.49
VSX1-203ENST00000409285 OTOFQ9HC10 1997 aa24.34■■□□□ 1.49
VSX1-203ENST00000409285 PLCD1P51178 756 aa24.33■■□□□ 1.49
VSX1-203ENST00000409285 ANAPC15P60006 121 aa24.33■■□□□ 1.49
VSX1-203ENST00000409285 RBM46Q8TBY0 533 aaKnown RBP24.33■■□□□ 1.49
VSX1-203ENST00000409285 CSRNP1Q96S65 589 aa24.33■■□□□ 1.49
VSX1-203ENST00000409285 NBPF3Q9H094 633 aa24.33■■□□□ 1.49
VSX1-203ENST00000409285 SERPINB13Q9UIV8 391 aa24.33■■□□□ 1.49
VSX1-203ENST00000409285 CYP2D7A0A087X1C5 515 aa24.32■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms