RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 USP40Q9NVE5 1235 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 RANBP6O60518 1105 aaKnown RBP4.38□□□□□ -1.71
RTN4-208ENST00000404909 CACNB3P54284 484 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 APOBRQ0VD83 1088 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 ME3Q16798 604 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 CCDC83Q8IWF9 413 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 AMOTL1Q8IY63 956 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 OGFOD1Q8N543 542 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 FAM163AQ96GL9 167 aaPredicted RBP4.38□□□□□ -1.71
RTN4-208ENST00000404909 ZKSCAN3Q9BRR0 538 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 SYT17Q9BSW7 474 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 GAKO14976 1311 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 ZMYM6O95789 1325 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 IGSF3O75054 1194 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 RHBDL3P58872 404 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 EXOSC10Q01780 885 aaKnown RBP4.38□□□□□ -1.71
RTN4-208ENST00000404909 CXCL9Q07325 125 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 CDC42EP5Q6NZY7 148 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 GIMAP6Q6P9H5 292 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 RSBN1LQ6PCB5 846 aaPredicted RBP4.38□□□□□ -1.71
RTN4-208ENST00000404909 CYB5R4Q7L1T6 521 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 RAB11FIP4Q86YS3 637 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 MB21D2Q8IYB1 491 aaPredicted RBP4.38□□□□□ -1.71
RTN4-208ENST00000404909 KRT23Q9C075 422 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 RNF41Q9H4P4 317 aaPredicted RBP4.38□□□□□ -1.71
RTN4-208ENST00000404909 TACC3Q9Y6A5 838 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 CCDC88AQ3V6T2 1871 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 SCN9AQ15858 1988 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 KIF13BQ9NQT8 1826 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 MYH2Q9UKX2 1941 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 SLC3A2P08195 630 aaKnown RBP4.37□□□□□ -1.71
RTN4-208ENST00000404909 ANTXR2P58335 489 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 TCP10Q12799 353 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 APOBEC3HQ6NTF7 200 aaKnown RBP4.37□□□□□ -1.71
RTN4-208ENST00000404909 HHIPL2Q6UWX4 724 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 CERS3Q8IU89 383 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 STAG1Q8WVM7 1258 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 DYNLL2Q96FJ2 89 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 CNNM2Q9H8M5 875 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 ZSWIM5Q9P217 1185 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 ARPP21Q9UBL0 812 aaPredicted RBP4.37□□□□□ -1.71
RTN4-208ENST00000404909 GJA3Q9Y6H8 435 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 FLT1P17948 1338 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 DLEC1Q9Y238 1755 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 IFIT3O14879 490 aaKnown RBP4.37□□□□□ -1.71
RTN4-208ENST00000404909 PPFIA3O75145 1194 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 VIL1P09327 827 aaKnown RBP4.37□□□□□ -1.71
RTN4-208ENST00000404909 PLCD1P51178 756 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 CCT2P78371 535 aaKnown RBP4.37□□□□□ -1.71
RTN4-208ENST00000404909 NFIAQ12857 509 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 CFAP100Q494V2 611 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 CIAPIN1Q6FI81 312 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 NFXL1Q6ZNB6 911 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 ZSCAN31Q96LW9 406 aaPredicted RBP4.37□□□□□ -1.71
RTN4-208ENST00000404909 VPS33BQ9H267 617 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 MKNK2Q9HBH9 465 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 BAZ2AQ9UIF9 1905 aaKnown RBP4.37□□□□□ -1.71
RTN4-208ENST00000404909 FKBP1AP62942 108 aaKnown RBP4.37□□□□□ -1.71
RTN4-208ENST00000404909 PDE4BQ07343 736 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 TMEM67Q5HYA8 995 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 FAM47AQ5JRC9 791 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 RBM26Q5T8P6 1007 aaKnown RBP4.37□□□□□ -1.71
RTN4-208ENST00000404909 C12orf60Q5U649 245 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 FOXD4L5Q5VV16 416 aaPredicted RBP4.37□□□□□ -1.71
RTN4-208ENST00000404909 ZSCAN29Q8IWY8 852 aaPredicted RBP4.37□□□□□ -1.71
RTN4-208ENST00000404909 SLC44A5Q8NCS7 719 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 IL27Q8NEV9 243 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 FOXD4L4Q8WXT5 416 aaPredicted RBP4.37□□□□□ -1.71
RTN4-208ENST00000404909 ESR2Q92731 530 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 ZDHHC15Q96MV8 337 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 UBAC1Q9BSL1 405 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 TDRD3Q9H7E2 651 aaKnown RBP4.37□□□□□ -1.71
RTN4-208ENST00000404909 DDX4Q9NQI0 724 aaKnown RBP4.37□□□□□ -1.71
RTN4-208ENST00000404909 SH2B1Q9NRF2 756 aaPredicted RBP4.37□□□□□ -1.71
RTN4-208ENST00000404909 MKRN1Q9UHC7 482 aaKnown RBP4.37□□□□□ -1.71
RTN4-208ENST00000404909 SERPINA10Q9UK55 444 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 HDAC9Q9UKV0 1011 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 COL4A5P29400 1685 aa4.37□□□□□ -1.71
RTN4-208ENST00000404909 KLF18A0A0U1RQI7 1052 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 CLRN2A0PK11 232 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 ERICH2A1L162 156 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 WDHD1O75717 1129 aaPredicted RBP4.36□□□□□ -1.71
RTN4-208ENST00000404909 RXRAP19793 462 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 PRELPP51888 382 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 EIF6P56537 245 aaKnown RBP4.36□□□□□ -1.71
RTN4-208ENST00000404909 CUL4AQ13619 759 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 SART3Q15020 963 aaKnown RBP4.36□□□□□ -1.71
RTN4-208ENST00000404909 PRMT6Q96LA8 375 aaPredicted RBP4.36□□□□□ -1.71
RTN4-208ENST00000404909 SENP2Q9HC62 589 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 NCOA5Q9HCD5 579 aaKnown RBP4.36□□□□□ -1.71
RTN4-208ENST00000404909 CHMP5Q9NZZ3 219 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 ANAPC4Q9UJX5 808 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 TAOK2Q9UL54 1235 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 ANGEL1Q9UNK9 670 aaKnown RBP4.36□□□□□ -1.71
RTN4-208ENST00000404909 SMC3Q9UQE7 1217 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.36□□□□□ -1.71
RTN4-208ENST00000404909 MYO3BQ8WXR4 1341 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 SHTN1A0MZ66 631 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 TSPY2A6NKD2 308 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 GOLGA8BA8MQT2 603 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms