RNA–Protein interactions for RNA: ENST00000397761.6

PDLIM2-205, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PDLIM2, Length 1,491 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-205ENST00000397761 FGRP09769 529 aa23.08■■□□□ 1.29
PDLIM2-205ENST00000397761 RASSF7Q02833 373 aa23.08■■□□□ 1.29
PDLIM2-205ENST00000397761 CXCL9Q07325 125 aa23.08■■□□□ 1.29
PDLIM2-205ENST00000397761 AGBL3Q8NEM8 1001 aa23.08■■□□□ 1.29
PDLIM2-205ENST00000397761 TACC3Q9Y6A5 838 aa23.08■■□□□ 1.29
PDLIM2-205ENST00000397761 USP17L12C9JPN9 530 aa23.07■■□□□ 1.28
PDLIM2-205ENST00000397761 USP17L21D6R901 530 aa23.07■■□□□ 1.28
PDLIM2-205ENST00000397761 PCP11498 1178 aaKnown RBP23.07■■□□□ 1.28
PDLIM2-205ENST00000397761 ANKRD1Q15327 319 aa23.07■■□□□ 1.28
PDLIM2-205ENST00000397761 TEX11Q8IYF3 940 aa23.07■■□□□ 1.28
PDLIM2-205ENST00000397761 TMX3Q96JJ7 454 aa23.07■■□□□ 1.28
PDLIM2-205ENST00000397761 LIMCH1Q9UPQ0 1083 aa23.07■■□□□ 1.28
PDLIM2-205ENST00000397761 ROBO3Q96MS0 1386 aa23.07■■□□□ 1.28
PDLIM2-205ENST00000397761 USP5P45974 858 aa23.06■■□□□ 1.28
PDLIM2-205ENST00000397761 CTDSPL2Q05D32 466 aa23.06■■□□□ 1.28
PDLIM2-205ENST00000397761 TOB2Q14106 344 aaPredicted RBP23.06■■□□□ 1.28
PDLIM2-205ENST00000397761 CNNM2Q9H8M5 875 aa23.06■■□□□ 1.28
PDLIM2-205ENST00000397761 NEDD4P46934 1319 aa23.06■■□□□ 1.28
PDLIM2-205ENST00000397761 FZD9O00144 591 aa23.05■■□□□ 1.28
PDLIM2-205ENST00000397761 CUL4AQ13619 759 aa23.05■■□□□ 1.28
PDLIM2-205ENST00000397761 RALYLQ86SE5 291 aaKnown RBP23.05■■□□□ 1.28
PDLIM2-205ENST00000397761 TGFBRAP1Q8WUH2 860 aa23.05■■□□□ 1.28
PDLIM2-205ENST00000397761 RNF41Q9H4P4 317 aaPredicted RBP23.05■■□□□ 1.28
PDLIM2-205ENST00000397761 FLT1P17948 1338 aa23.05■■□□□ 1.28
PDLIM2-205ENST00000397761 MINDY4BA8MYZ0 360 aa23.05■■□□□ 1.28
PDLIM2-205ENST00000397761 MCM5P33992 734 aa23.05■■□□□ 1.28
PDLIM2-205ENST00000397761 ANTXR2P58335 489 aa23.05■■□□□ 1.28
PDLIM2-205ENST00000397761 TRDNQ13061 729 aa23.05■■□□□ 1.28
PDLIM2-205ENST00000397761 C12orf60Q5U649 245 aa23.05■■□□□ 1.28
PDLIM2-205ENST00000397761 CIAPIN1Q6FI81 312 aa23.05■■□□□ 1.28
PDLIM2-205ENST00000397761 CDC42EP5Q6NZY7 148 aa23.05■■□□□ 1.28
PDLIM2-205ENST00000397761 MFSD6Q6ZSS7 791 aa23.05■■□□□ 1.28
PDLIM2-205ENST00000397761 TCEANC2Q96MN5 208 aa23.05■■□□□ 1.28
PDLIM2-205ENST00000397761 KRT23Q9C075 422 aa23.05■■□□□ 1.28
PDLIM2-205ENST00000397761 MCM9Q9NXL9 1143 aa23.05■■□□□ 1.28
PDLIM2-205ENST00000397761 SIPA1L1O43166 1804 aa23.04■■□□□ 1.28
PDLIM2-205ENST00000397761 CYP2D7A0A087X1C5 515 aa23.04■■□□□ 1.28
PDLIM2-205ENST00000397761 WDHD1O75717 1129 aaPredicted RBP23.04■■□□□ 1.28
PDLIM2-205ENST00000397761 MMP14P50281 582 aa23.04■■□□□ 1.28
PDLIM2-205ENST00000397761 TNIP1Q15025 636 aa23.04■■□□□ 1.28
PDLIM2-205ENST00000397761 ZSCAN31Q96LW9 406 aaPredicted RBP23.04■■□□□ 1.28
PDLIM2-205ENST00000397761 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.04■■□□□ 1.28
PDLIM2-205ENST00000397761 NPM3O75607 178 aaKnown RBP23.03■■□□□ 1.28
PDLIM2-205ENST00000397761 USP17L8P0C7I0 530 aa23.03■■□□□ 1.28
PDLIM2-205ENST00000397761 GPR162Q16538 588 aa23.03■■□□□ 1.28
PDLIM2-205ENST00000397761 Q6ZUG5 572 aa23.03■■□□□ 1.28
PDLIM2-205ENST00000397761 NKX2-3Q8TAU0 364 aa23.03■■□□□ 1.28
PDLIM2-205ENST00000397761 USP40Q9NVE5 1235 aa23.03■■□□□ 1.28
PDLIM2-205ENST00000397761 SMIM22K7EJ46 135 aa23.02■■□□□ 1.28
PDLIM2-205ENST00000397761 ORC4O43929 436 aa23.02■■□□□ 1.28
PDLIM2-205ENST00000397761 EVCP57679 992 aa23.02■■□□□ 1.28
PDLIM2-205ENST00000397761 MAPKAPK5Q8IW41 473 aa23.02■■□□□ 1.28
PDLIM2-205ENST00000397761 MTA3Q9BTC8 594 aa23.02■■□□□ 1.28
PDLIM2-205ENST00000397761 INCENPQ9NQS7 918 aa23.02■■□□□ 1.28
PDLIM2-205ENST00000397761 SH2B1Q9NRF2 756 aaPredicted RBP23.02■■□□□ 1.28
PDLIM2-205ENST00000397761 B4E1Z4 1266 aa23.01■■□□□ 1.27
PDLIM2-205ENST00000397761 PRC1O43663 620 aa23.01■■□□□ 1.27
PDLIM2-205ENST00000397761 CYP2D6P10635 497 aa23.01■■□□□ 1.27
PDLIM2-205ENST00000397761 LMNB1P20700 586 aa23.01■■□□□ 1.27
PDLIM2-205ENST00000397761 RPS12P25398 132 aaKnown RBP23.01■■□□□ 1.27
PDLIM2-205ENST00000397761 DDIT3P35638 169 aa23.01■■□□□ 1.27
PDLIM2-205ENST00000397761 NT5C2P49902 561 aa23.01■■□□□ 1.27
PDLIM2-205ENST00000397761 ARHGAP27Q6ZUM4 889 aa23.01■■□□□ 1.27
PDLIM2-205ENST00000397761 MTMR14Q8NCE2 650 aa23.01■■□□□ 1.27
PDLIM2-205ENST00000397761 INTS4Q96HW7 963 aaKnown RBP23.01■■□□□ 1.27
PDLIM2-205ENST00000397761 IDI2Q9BXS1 227 aa23.01■■□□□ 1.27
PDLIM2-205ENST00000397761 TPCN1Q9ULQ1 816 aa23.01■■□□□ 1.27
PDLIM2-205ENST00000397761 PCDHAC2Q9Y5I4 1007 aa23.01■■□□□ 1.27
PDLIM2-205ENST00000397761 CFAP100Q494V2 611 aa23■■□□□ 1.27
PDLIM2-205ENST00000397761 NOL8Q76FK4 1167 aaKnown RBP23■■□□□ 1.27
PDLIM2-205ENST00000397761 CYB5R4Q7L1T6 521 aa23■■□□□ 1.27
PDLIM2-205ENST00000397761 HDAC9Q9UKV0 1011 aa23■■□□□ 1.27
PDLIM2-205ENST00000397761 ZBTB12Q9Y330 459 aaPredicted RBP23■■□□□ 1.27
PDLIM2-205ENST00000397761 SLC3A2P08195 630 aaKnown RBP22.99■■□□□ 1.27
PDLIM2-205ENST00000397761 YBX3P16989 372 aaKnown RBP eCLIP22.99■■□□□ 1.27
PDLIM2-205ENST00000397761 EVX2Q03828 476 aa22.99■■□□□ 1.27
PDLIM2-205ENST00000397761 AMOTL1Q8IY63 956 aa22.99■■□□□ 1.27
PDLIM2-205ENST00000397761 DDX4Q9NQI0 724 aaKnown RBP22.99■■□□□ 1.27
PDLIM2-205ENST00000397761 COL2A1P02458 1487 aaPredicted RBP22.99■■□□□ 1.27
PDLIM2-205ENST00000397761 SPDYE2BA6NHP3 402 aa22.98■■□□□ 1.27
PDLIM2-205ENST00000397761 KDM4AO75164 1064 aa22.98■■□□□ 1.27
PDLIM2-205ENST00000397761 LARGE1O95461 756 aa22.98■■□□□ 1.27
PDLIM2-205ENST00000397761 SPDYE6P0CI01 402 aa22.98■■□□□ 1.27
PDLIM2-205ENST00000397761 YY1P25490 414 aa22.98■■□□□ 1.27
PDLIM2-205ENST00000397761 ME3Q16798 604 aa22.98■■□□□ 1.27
PDLIM2-205ENST00000397761 OGFOD1Q8N543 542 aa22.98■■□□□ 1.27
PDLIM2-205ENST00000397761 BRF1Q92994 677 aa22.98■■□□□ 1.27
PDLIM2-205ENST00000397761 ZBED3Q96IU2 234 aaPredicted RBP22.98■■□□□ 1.27
PDLIM2-205ENST00000397761 TMEM87BQ96K49 555 aa22.98■■□□□ 1.27
PDLIM2-205ENST00000397761 LRRC2Q9BYS8 371 aa22.98■■□□□ 1.27
PDLIM2-205ENST00000397761 ZSWIM5Q9P217 1185 aa22.98■■□□□ 1.27
PDLIM2-205ENST00000397761 EIF6P56537 245 aaKnown RBP22.98■■□□□ 1.27
PDLIM2-205ENST00000397761 ZNF280AP59817 542 aaPredicted RBP22.98■■□□□ 1.27
PDLIM2-205ENST00000397761 CHST3Q7LGC8 479 aa22.98■■□□□ 1.27
PDLIM2-205ENST00000397761 ESR2Q92731 530 aa22.98■■□□□ 1.27
PDLIM2-205ENST00000397761 PRMT6Q96LA8 375 aaPredicted RBP22.98■■□□□ 1.27
PDLIM2-205ENST00000397761 LARP6Q9BRS8 491 aaKnown RBP22.98■■□□□ 1.27
PDLIM2-205ENST00000397761 PLCD1P51178 756 aa22.97■■□□□ 1.27
PDLIM2-205ENST00000397761 RBM5P52756 815 aaKnown RBP eCLIP22.97■■□□□ 1.27
PDLIM2-205ENST00000397761 PDE4BQ07343 736 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms