RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CALM1P0DP23 149 aa13.21□□□□□ -0.29
SYNPO-202ENST00000394243 CALM2P0DP24 149 aa13.21□□□□□ -0.29
SYNPO-202ENST00000394243 CALM3P0DP25 149 aa13.21□□□□□ -0.29
SYNPO-202ENST00000394243 AMOTQ4VCS5 1084 aa13.21□□□□□ -0.29
SYNPO-202ENST00000394243 ANO1Q5XXA6 986 aa13.21□□□□□ -0.29
SYNPO-202ENST00000394243 RASEFQ8IZ41 740 aa13.21□□□□□ -0.29
SYNPO-202ENST00000394243 LRRC43Q8N309 656 aa13.21□□□□□ -0.29
SYNPO-202ENST00000394243 NUP58Q9BVL2 599 aa13.21□□□□□ -0.29
SYNPO-202ENST00000394243 MED4Q9NPJ6 270 aa13.21□□□□□ -0.29
SYNPO-202ENST00000394243 PPP1R1BQ9UD71 204 aaPredicted RBP13.21□□□□□ -0.29
SYNPO-202ENST00000394243 SMARCA4P51532 1647 aa13.21□□□□□ -0.29
SYNPO-202ENST00000394243 BAG3O95817 575 aa13.21□□□□□ -0.3
SYNPO-202ENST00000394243 MAGEA1P43355 309 aa13.21□□□□□ -0.3
SYNPO-202ENST00000394243 SATB1Q01826 763 aa13.21□□□□□ -0.3
SYNPO-202ENST00000394243 SLC9C1Q4G0N8 1177 aa13.21□□□□□ -0.3
SYNPO-202ENST00000394243 CEP85Q6P2H3 762 aa13.21□□□□□ -0.3
SYNPO-202ENST00000394243 HDAC9Q9UKV0 1011 aa13.21□□□□□ -0.3
SYNPO-202ENST00000394243 SNX16P57768 344 aa13.21□□□□□ -0.3
SYNPO-202ENST00000394243 NFE2L3Q9Y4A8 694 aa13.21□□□□□ -0.3
SYNPO-202ENST00000394243 GNAQP50148 359 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 ITIH3Q06033 890 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 TRPC3Q13507 836 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 FAM204AQ9H8W3 233 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 ZBTB17Q13105 803 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 CCT6BQ92526 530 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 PAG1Q9NWQ8 432 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 CCDC141Q6ZP82 1450 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 ARHGAP42A6NI28 874 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 CRCPO75575 148 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 GAS8O95995 478 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 DBN1Q16643 649 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 PROSER2Q86WR7 435 aaPredicted RBP13.2□□□□□ -0.3
SYNPO-202ENST00000394243 TAB2Q9NYJ8 693 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 CAMSAP2Q08AD1 1489 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 ZBTB40Q9NUA8 1239 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 TTC41PQ6P2S7 1318 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 STMN1P16949 149 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 CYP7A1P22680 504 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 PDE4DQ08499 809 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 IFT88Q13099 833 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 CSGALNACT2Q8N6G5 542 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 MLKLQ8NB16 471 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 N4BP2L2Q92802 583 aaPredicted RBP13.2□□□□□ -0.3
SYNPO-202ENST00000394243 MRFAP1L1Q96HT8 127 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 PA2G4Q9UQ80 394 aaKnown RBP13.2□□□□□ -0.3
SYNPO-202ENST00000394243 ZBTB12Q9Y330 459 aaPredicted RBP13.2□□□□□ -0.3
SYNPO-202ENST00000394243 UQCRFS1P1P0C7P4 283 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 IRX4P78413 519 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 LRRC8AQ8IWT6 810 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 RPGRIP1Q96KN7 1286 aa13.2□□□□□ -0.3
SYNPO-202ENST00000394243 XAB2Q9HCS7 855 aaKnown RBP13.2□□□□□ -0.3
SYNPO-202ENST00000394243 SEC31AO94979 1220 aaKnown RBP13.19□□□□□ -0.3
SYNPO-202ENST00000394243 PAK1Q13153 545 aa13.19□□□□□ -0.3
SYNPO-202ENST00000394243 PLS1Q14651 629 aa13.19□□□□□ -0.3
SYNPO-202ENST00000394243 ABTB1Q969K4 478 aaPredicted RBP13.19□□□□□ -0.3
SYNPO-202ENST00000394243 TMOD3Q9NYL9 352 aa13.19□□□□□ -0.3
SYNPO-202ENST00000394243 RPS6KB1P23443 525 aa13.19□□□□□ -0.3
SYNPO-202ENST00000394243 RPS6KA1Q15418 735 aa13.19□□□□□ -0.3
SYNPO-202ENST00000394243 DESI2Q9BSY9 194 aa13.19□□□□□ -0.3
SYNPO-202ENST00000394243 C6orf50Q9HD87 102 aa13.19□□□□□ -0.3
SYNPO-202ENST00000394243 KRT5P13647 590 aa13.19□□□□□ -0.3
SYNPO-202ENST00000394243 RASA3Q14644 834 aa13.19□□□□□ -0.3
SYNPO-202ENST00000394243 SLC9C2Q5TAH2 1124 aa13.19□□□□□ -0.3
SYNPO-202ENST00000394243 WAPLQ7Z5K2 1190 aa13.19□□□□□ -0.3
SYNPO-202ENST00000394243 CXorf38Q8TB03 319 aa13.19□□□□□ -0.3
SYNPO-202ENST00000394243 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.19□□□□□ -0.3
SYNPO-202ENST00000394243 PRDM11Q9NQV5 511 aa13.19□□□□□ -0.3
SYNPO-202ENST00000394243 PPP1R9AQ9ULJ8 1098 aa13.19□□□□□ -0.3
SYNPO-202ENST00000394243 DISP3Q9P2K9 1392 aa13.19□□□□□ -0.3
SYNPO-202ENST00000394243 SPECC1L-ADORA2AF8WAN1 911 aa13.19□□□□□ -0.3
SYNPO-202ENST00000394243 SH3BP5O60239 455 aa13.19□□□□□ -0.3
SYNPO-202ENST00000394243 TROVE2P10155 538 aaKnown RBP eCLIP13.19□□□□□ -0.3
SYNPO-202ENST00000394243 SV2BQ7L1I2 683 aa13.19□□□□□ -0.3
SYNPO-202ENST00000394243 VCX3AQ9NNX9 186 aa13.19□□□□□ -0.3
SYNPO-202ENST00000394243 TSKSQ9UJT2 592 aa13.19□□□□□ -0.3
SYNPO-202ENST00000394243 DTNBO60941 627 aa13.18□□□□□ -0.3
SYNPO-202ENST00000394243 WDR78Q5VTH9 848 aa13.18□□□□□ -0.3
SYNPO-202ENST00000394243 C8orf58Q8NAV2 365 aa13.18□□□□□ -0.3
SYNPO-202ENST00000394243 FAM212AQ96EL1 285 aa13.18□□□□□ -0.3
SYNPO-202ENST00000394243 LARSQ9P2J5 1176 aaKnown RBP13.18□□□□□ -0.3
SYNPO-202ENST00000394243 LRRC23Q53EV4 343 aaPredicted RBP13.18□□□□□ -0.3
SYNPO-202ENST00000394243 CCDC105Q8IYK2 499 aa13.18□□□□□ -0.3
SYNPO-202ENST00000394243 ZNF622Q969S3 477 aaKnown RBP eCLIP13.18□□□□□ -0.3
SYNPO-202ENST00000394243 RPL13P26373 211 aaKnown RBP13.18□□□□□ -0.3
SYNPO-202ENST00000394243 FAN1Q9Y2M0 1017 aa13.18□□□□□ -0.3
SYNPO-202ENST00000394243 EPB41P11171 864 aaKnown RBP13.18□□□□□ -0.3
SYNPO-202ENST00000394243 WWC3Q9ULE0 1092 aa13.18□□□□□ -0.3
SYNPO-202ENST00000394243 RTL9Q8NET4 1388 aa13.18□□□□□ -0.3
SYNPO-202ENST00000394243 TBC1D8O95759 1140 aa13.18□□□□□ -0.3
SYNPO-202ENST00000394243 CHPF2Q9P2E5 772 aa13.18□□□□□ -0.3
SYNPO-202ENST00000394243 PYCARDQ9ULZ3 195 aa13.18□□□□□ -0.3
SYNPO-202ENST00000394243 MGEA5O60502 916 aa13.18□□□□□ -0.3
SYNPO-202ENST00000394243 LDHCP07864 332 aa13.18□□□□□ -0.3
SYNPO-202ENST00000394243 KCNH5Q8NCM2 988 aa13.17□□□□□ -0.3
SYNPO-202ENST00000394243 SLC52A1Q9NWF4 448 aa13.17□□□□□ -0.3
SYNPO-202ENST00000394243 FRMD4BQ9Y2L6 1034 aa13.17□□□□□ -0.3
SYNPO-202ENST00000394243 PPP2R2CQ9Y2T4 447 aa13.17□□□□□ -0.3
SYNPO-202ENST00000394243 PPP1R2P41236 205 aa13.17□□□□□ -0.3
SYNPO-202ENST00000394243 CDC37L1Q7L3B6 337 aa13.17□□□□□ -0.3
SYNPO-202ENST00000394243 GAS2L3Q86XJ1 694 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms