RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 MAP3K14Q99558 947 aa7.76□□□□□ -1.17
VPS39-202ENST00000348544 HELLSQ9NRZ9 838 aa7.76□□□□□ -1.17
VPS39-202ENST00000348544 SAMSN1Q9NSI8 373 aaKnown RBP7.76□□□□□ -1.17
VPS39-202ENST00000348544 RAI14Q9P0K7 980 aa7.76□□□□□ -1.17
VPS39-202ENST00000348544 MAN1B1Q9UKM7 699 aa7.76□□□□□ -1.17
VPS39-202ENST00000348544 C4AP0C0L4 1744 aa7.76□□□□□ -1.17
VPS39-202ENST00000348544 C4BP0C0L5 1744 aa7.76□□□□□ -1.17
VPS39-202ENST00000348544 ZC3H4Q9UPT8 1303 aaKnown RBP7.76□□□□□ -1.17
VPS39-202ENST00000348544 M0R2C6 588 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 TEX33O43247 280 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 RNF40O75150 1001 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 PPP6R2O75170 966 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 PRR29P0C7W0 189 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 PSEN1P49768 467 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 ANTXR2P58335 489 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 NR1I3Q14994 352 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 APTXQ7Z2E3 356 aaKnown RBP7.75□□□□□ -1.17
VPS39-202ENST00000348544 TADA2BQ86TJ2 420 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 EFCAB13Q8IY85 973 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 SLC35F6Q8N357 371 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 KAT2BQ92831 832 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 SECISBP2LQ93073 1101 aaKnown RBP7.75□□□□□ -1.17
VPS39-202ENST00000348544 PANX2Q96RD6 677 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 CDC5LQ99459 802 aaKnown RBP7.75□□□□□ -1.17
VPS39-202ENST00000348544 DDX60Q8IY21 1712 aaKnown RBP7.75□□□□□ -1.17
VPS39-202ENST00000348544 AKR1B15C9JRZ8 316 aaPredicted RBP7.75□□□□□ -1.17
VPS39-202ENST00000348544 KIF5CO60282 957 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 MMP14P50281 582 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 HAND2P61296 217 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 KIF4BQ2VIQ3 1234 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 HSP90B2PQ58FF3 399 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 ZNF530Q6P9A1 599 aaPredicted RBP7.75□□□□□ -1.17
VPS39-202ENST00000348544 MMS22LQ6ZRQ5 1243 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 VPS37DQ86XT2 251 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 MED4Q9NPJ6 270 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 SEC31BQ9NQW1 1179 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 PAG1Q9NWQ8 432 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 KCNH3Q9ULD8 1083 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 A0A1B0GTH6 734 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 RNMTO43148 476 aaKnown RBP7.75□□□□□ -1.17
VPS39-202ENST00000348544 AARSP49588 968 aaKnown RBP eCLIP7.75□□□□□ -1.17
VPS39-202ENST00000348544 RBL2Q08999 1139 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 PLEKHO1Q53GL0 409 aaPredicted RBP7.75□□□□□ -1.17
VPS39-202ENST00000348544 SPECC1Q5M775 1068 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 CCDC102BQ68D86 513 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 RASGRP2Q7LDG7 609 aa7.75□□□□□ -1.17
VPS39-202ENST00000348544 DDX21Q9NR30 783 aaKnown RBP eCLIP7.75□□□□□ -1.17
VPS39-202ENST00000348544 RGPD2P0DJD1 1756 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 CTAGE9A4FU28 777 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 EXOC5O00471 708 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 PRC1O43663 620 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 DDX58O95786 925 aaKnown RBP7.74□□□□□ -1.17
VPS39-202ENST00000348544 SKIDA1Q1XH10 827 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 AKAP4Q5JQC9 854 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 SWT1Q5T5J6 900 aaKnown RBP7.74□□□□□ -1.17
VPS39-202ENST00000348544 SLC9C2Q5TAH2 1124 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 MCTP2Q6DN12 878 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.74□□□□□ -1.17
VPS39-202ENST00000348544 RIC3Q7Z5B4 369 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 MB21D2Q8IYB1 491 aaPredicted RBP7.74□□□□□ -1.17
VPS39-202ENST00000348544 GPATCH11Q8N954 259 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 ACRBPQ8NEB7 543 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 ENOX1Q8TC92 643 aaKnown RBP7.74□□□□□ -1.17
VPS39-202ENST00000348544 AFAP1L1Q8TED9 768 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 RIN2Q8WYP3 895 aaPredicted RBP7.74□□□□□ -1.17
VPS39-202ENST00000348544 MYD88Q99836 296 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 DEF6Q9H4E7 631 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 TMEM2Q9UHN6 1383 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 A0A087WUV0 522 aaPredicted RBP7.74□□□□□ -1.17
VPS39-202ENST00000348544 CTAGE15A4D2H0 777 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 CTAGE8P0CG41 777 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 PBX1P40424 430 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 ARHGAP25P42331 645 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 AMPD2Q01433 879 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 GRIN1Q05586 938 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 MORC3Q14149 939 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 DNAJC21Q5F1R6 531 aaKnown RBP7.74□□□□□ -1.17
VPS39-202ENST00000348544 KRT40Q6A162 431 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 NCAPH2Q6IBW4 605 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 WDR93Q6P2C0 686 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 CTAGE6Q86UF2 777 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 CTAGE4Q8IX94 777 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 GRAMD1CQ8IYS0 662 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 MICALL1Q8N3F8 863 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 IGSF22Q8N9C0 903 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 NKX2-3Q8TAU0 364 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 ANKRD24Q8TF21 1146 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 CPLX3Q8WVH0 158 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 TAOK2Q9UL54 1235 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 USP54Q70EL1 1684 aa7.74□□□□□ -1.17
VPS39-202ENST00000348544 LTN1O94822 1766 aa7.73□□□□□ -1.17
VPS39-202ENST00000348544 CDHR2Q9BYE9 1310 aa7.73□□□□□ -1.17
VPS39-202ENST00000348544 ECM29Q5VYK3 1845 aa7.73□□□□□ -1.17
VPS39-202ENST00000348544 CPLX1O14810 134 aa7.73□□□□□ -1.17
VPS39-202ENST00000348544 MFAP3LO75121 409 aa7.73□□□□□ -1.17
VPS39-202ENST00000348544 SARSP49591 514 aaKnown RBP7.73□□□□□ -1.17
VPS39-202ENST00000348544 GSCP56915 257 aaPredicted RBP7.73□□□□□ -1.17
VPS39-202ENST00000348544 TUBB2AQ13885 445 aa7.73□□□□□ -1.17
VPS39-202ENST00000348544 WHAMMP3Q1A5X7 153 aa7.73□□□□□ -1.17
VPS39-202ENST00000348544 RABL6Q3YEC7 729 aaPredicted RBP7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms