RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 DTNBO60941 627 aa13.58□□□□□ -0.23
RTN3-203ENST00000341307 NEDD9Q14511 834 aa13.58□□□□□ -0.23
RTN3-203ENST00000341307 C11orf57Q6ZUT1 292 aaPredicted RBP13.58□□□□□ -0.23
RTN3-203ENST00000341307 TEX11Q8IYF3 940 aa13.58□□□□□ -0.23
RTN3-203ENST00000341307 PROM2Q8N271 834 aa13.58□□□□□ -0.23
RTN3-203ENST00000341307 TJP1Q07157 1748 aa13.58□□□□□ -0.24
RTN3-203ENST00000341307 GCFC2P16383 781 aaKnown RBP13.58□□□□□ -0.24
RTN3-203ENST00000341307 ERCC3P19447 782 aa13.58□□□□□ -0.24
RTN3-203ENST00000341307 KCNJ6P48051 423 aa13.58□□□□□ -0.24
RTN3-203ENST00000341307 VPS53Q5VIR6 699 aa13.58□□□□□ -0.24
RTN3-203ENST00000341307 HOMER1Q86YM7 354 aa13.58□□□□□ -0.24
RTN3-203ENST00000341307 SYNE4Q8N205 404 aa13.58□□□□□ -0.24
RTN3-203ENST00000341307 OTUD6BQ8N6M0 293 aa13.58□□□□□ -0.24
RTN3-203ENST00000341307 N4BP2L2Q92802 583 aaPredicted RBP13.58□□□□□ -0.24
RTN3-203ENST00000341307 DBNLQ9UJU6 430 aaKnown RBP13.58□□□□□ -0.24
RTN3-203ENST00000341307 CCDC151A5D8V7 595 aa13.57□□□□□ -0.24
RTN3-203ENST00000341307 GOLGA6L19H0YKK7 550 aa13.57□□□□□ -0.24
RTN3-203ENST00000341307 GSDMDP57764 484 aa13.57□□□□□ -0.24
RTN3-203ENST00000341307 MCM6Q14566 821 aa13.57□□□□□ -0.24
RTN3-203ENST00000341307 HLFQ16534 295 aa13.57□□□□□ -0.24
RTN3-203ENST00000341307 TNNI3KQ59H18 835 aa13.57□□□□□ -0.24
RTN3-203ENST00000341307 ARMCX5Q6P1M9 558 aa13.57□□□□□ -0.24
RTN3-203ENST00000341307 CTCFLQ8NI51 663 aaPredicted RBP13.57□□□□□ -0.24
RTN3-203ENST00000341307 VEZTQ9HBM0 779 aa13.57□□□□□ -0.24
RTN3-203ENST00000341307 FPGT-TNNI3KV9GXZ4 949 aa13.57□□□□□ -0.24
RTN3-203ENST00000341307 UTRNP46939 3433 aa13.57□□□□□ -0.24
RTN3-203ENST00000341307 ECM2O94769 699 aaPredicted RBP13.57□□□□□ -0.24
RTN3-203ENST00000341307 STARD3NLO95772 234 aa13.57□□□□□ -0.24
RTN3-203ENST00000341307 RBM5P52756 815 aaKnown RBP eCLIP13.57□□□□□ -0.24
RTN3-203ENST00000341307 FAM89AQ96GI7 184 aa13.57□□□□□ -0.24
RTN3-203ENST00000341307 FAM227BQ96M60 508 aa13.57□□□□□ -0.24
RTN3-203ENST00000341307 LSG1Q9H089 658 aaKnown RBP13.57□□□□□ -0.24
RTN3-203ENST00000341307 FAM107BQ9H098 131 aa13.57□□□□□ -0.24
RTN3-203ENST00000341307 ZBTB1Q9Y2K1 713 aa13.57□□□□□ -0.24
RTN3-203ENST00000341307 CHGBP05060 677 aa13.56□□□□□ -0.24
RTN3-203ENST00000341307 PTH1RQ03431 593 aa13.56□□□□□ -0.24
RTN3-203ENST00000341307 TCIRG1Q13488 830 aa13.56□□□□□ -0.24
RTN3-203ENST00000341307 GNL2Q13823 731 aaKnown RBP13.56□□□□□ -0.24
RTN3-203ENST00000341307 JAKMIP3Q5VZ66 844 aa13.56□□□□□ -0.24
RTN3-203ENST00000341307 DDX19AQ9NUU7 478 aaKnown RBP13.56□□□□□ -0.24
RTN3-203ENST00000341307 CYP19A1P11511 503 aaPredicted RBP13.56□□□□□ -0.24
RTN3-203ENST00000341307 HSPA4P34932 840 aa13.56□□□□□ -0.24
RTN3-203ENST00000341307 CCNHP51946 323 aaPredicted RBP13.56□□□□□ -0.24
RTN3-203ENST00000341307 DDR1Q08345 913 aa13.56□□□□□ -0.24
RTN3-203ENST00000341307 GRIK3Q13003 919 aa13.56□□□□□ -0.24
RTN3-203ENST00000341307 LRRC24Q50LG9 513 aa13.56□□□□□ -0.24
RTN3-203ENST00000341307 BEND6Q5SZJ8 279 aaPredicted RBP13.56□□□□□ -0.24
RTN3-203ENST00000341307 ISM2Q6H9L7 571 aa13.56□□□□□ -0.24
RTN3-203ENST00000341307 KIF6Q6ZMV9 814 aa13.56□□□□□ -0.24
RTN3-203ENST00000341307 MSL3Q8N5Y2 521 aaKnown RBP13.56□□□□□ -0.24
RTN3-203ENST00000341307 PRPF38AQ8NAV1 312 aaKnown RBP13.56□□□□□ -0.24
RTN3-203ENST00000341307 RABGGTAQ92696 567 aa13.56□□□□□ -0.24
RTN3-203ENST00000341307 EVI5LQ96CN4 794 aa13.56□□□□□ -0.24
RTN3-203ENST00000341307 DBNDD2Q9BQY9 259 aa13.56□□□□□ -0.24
RTN3-203ENST00000341307 LARP6Q9BRS8 491 aaKnown RBP13.56□□□□□ -0.24
RTN3-203ENST00000341307 SMC3Q9UQE7 1217 aa13.56□□□□□ -0.24
RTN3-203ENST00000341307 DOT1LQ8TEK3 1739 aa13.56□□□□□ -0.24
RTN3-203ENST00000341307 SF3B2Q13435 895 aaKnown RBP13.55□□□□□ -0.24
RTN3-203ENST00000341307 SMIM5Q71RC9 77 aa13.55□□□□□ -0.24
RTN3-203ENST00000341307 FMNL3Q8IVF7 1028 aa13.55□□□□□ -0.24
RTN3-203ENST00000341307 RASEFQ8IZ41 740 aa13.55□□□□□ -0.24
RTN3-203ENST00000341307 ZKSCAN4Q969J2 545 aaPredicted RBP13.55□□□□□ -0.24
RTN3-203ENST00000341307 ISCA1Q9BUE6 129 aa13.55□□□□□ -0.24
RTN3-203ENST00000341307 ETAA1Q9NY74 926 aa13.55□□□□□ -0.24
RTN3-203ENST00000341307 COL15A1P39059 1388 aa13.55□□□□□ -0.24
RTN3-203ENST00000341307 SBF2Q86WG5 1849 aa13.55□□□□□ -0.24
RTN3-203ENST00000341307 RTN2O75298 545 aa13.55□□□□□ -0.24
RTN3-203ENST00000341307 NR1I2O75469 434 aa13.55□□□□□ -0.24
RTN3-203ENST00000341307 CAVIN2O95810 425 aa13.55□□□□□ -0.24
RTN3-203ENST00000341307 ADCY2Q08462 1091 aa13.55□□□□□ -0.24
RTN3-203ENST00000341307 BRD3Q15059 726 aa13.55□□□□□ -0.24
RTN3-203ENST00000341307 ATG9AQ7Z3C6 839 aa13.55□□□□□ -0.24
RTN3-203ENST00000341307 ZNF483Q8TF39 744 aaPredicted RBP13.55□□□□□ -0.24
RTN3-203ENST00000341307 KCNB2Q92953 911 aa13.55□□□□□ -0.24
RTN3-203ENST00000341307 TEX13AQ9BXU3 409 aaPredicted RBP13.55□□□□□ -0.24
RTN3-203ENST00000341307 PUS3Q9BZE2 481 aaKnown RBP13.55□□□□□ -0.24
RTN3-203ENST00000341307 RPS6KL1Q9Y6S9 549 aa13.55□□□□□ -0.24
RTN3-203ENST00000341307 NMIQ13287 307 aaPredicted RBP13.54□□□□□ -0.24
RTN3-203ENST00000341307 TTC14Q96N46 770 aa13.54□□□□□ -0.24
RTN3-203ENST00000341307 FSD1Q9BTV5 496 aa13.54□□□□□ -0.24
RTN3-203ENST00000341307 NBPF3Q9H094 633 aa13.54□□□□□ -0.24
RTN3-203ENST00000341307 LRRC4BQ9NT99 713 aa13.54□□□□□ -0.24
RTN3-203ENST00000341307 TBC1D2BQ9UPU7 963 aa13.54□□□□□ -0.24
RTN3-203ENST00000341307 CPA1P15085 419 aa13.54□□□□□ -0.24
RTN3-203ENST00000341307 GJB2P29033 226 aa13.54□□□□□ -0.24
RTN3-203ENST00000341307 TIMM10P62072 90 aa13.54□□□□□ -0.24
RTN3-203ENST00000341307 PPP2R3AQ06190 1150 aa13.54□□□□□ -0.24
RTN3-203ENST00000341307 RUFY3Q7L099 469 aa13.54□□□□□ -0.24
RTN3-203ENST00000341307 DHX40Q8IX18 779 aaKnown RBP13.54□□□□□ -0.24
RTN3-203ENST00000341307 NEUROD6Q96NK8 337 aa13.54□□□□□ -0.24
RTN3-203ENST00000341307 TRIM6Q9C030 488 aaPredicted RBP13.54□□□□□ -0.24
RTN3-203ENST00000341307 CD248Q9HCU0 757 aa13.54□□□□□ -0.24
RTN3-203ENST00000341307 FAM169AQ9Y6X4 670 aa13.54□□□□□ -0.24
RTN3-203ENST00000341307 A0A0D9SFI3 127 aa13.53□□□□□ -0.24
RTN3-203ENST00000341307 EME2A4GXA9 379 aaPredicted RBP13.53□□□□□ -0.24
RTN3-203ENST00000341307 LARGE1O95461 756 aa13.53□□□□□ -0.24
RTN3-203ENST00000341307 MAP3K9P80192 1104 aa13.53□□□□□ -0.24
RTN3-203ENST00000341307 SKIDA1Q1XH10 827 aa13.53□□□□□ -0.24
RTN3-203ENST00000341307 PREPLQ4J6C6 727 aaPredicted RBP13.53□□□□□ -0.24
RTN3-203ENST00000341307 FAM173BQ6P4H8 233 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 193.1 ms