RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 ITIH3Q06033 890 aa14.11□□□□□ -0.15
SDC3-201ENST00000336798 SEPT6Q14141 434 aa14.11□□□□□ -0.15
SDC3-201ENST00000336798 EAPPQ56P03 285 aaPredicted RBP14.11□□□□□ -0.15
SDC3-201ENST00000336798 CASC4Q6P4E1 433 aa14.11□□□□□ -0.15
SDC3-201ENST00000336798 MYL10Q9BUA6 226 aa14.11□□□□□ -0.15
SDC3-201ENST00000336798 hCG_1642624A0A1W2PR95 340 aa14.11□□□□□ -0.15
SDC3-201ENST00000336798 ALDH1L1O75891 902 aa14.11□□□□□ -0.15
SDC3-201ENST00000336798 BSPRYQ5W0U4 402 aa14.11□□□□□ -0.15
SDC3-201ENST00000336798 KSR1Q8IVT5 923 aa14.11□□□□□ -0.15
SDC3-201ENST00000336798 CNBD1Q8NA66 436 aa14.11□□□□□ -0.15
SDC3-201ENST00000336798 IFT74Q96LB3 600 aa14.11□□□□□ -0.15
SDC3-201ENST00000336798 NKIRAS1Q9NYS0 192 aa14.11□□□□□ -0.15
SDC3-201ENST00000336798 CIB2O75838 187 aa14.11□□□□□ -0.15
SDC3-201ENST00000336798 CSPG5O95196 566 aa14.11□□□□□ -0.15
SDC3-201ENST00000336798 CTDSPL2Q05D32 466 aa14.11□□□□□ -0.15
SDC3-201ENST00000336798 CLUL1Q15846 466 aa14.11□□□□□ -0.15
SDC3-201ENST00000336798 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.11□□□□□ -0.15
SDC3-201ENST00000336798 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.11□□□□□ -0.15
SDC3-201ENST00000336798 STMN2Q93045 179 aa14.1□□□□□ -0.15
SDC3-201ENST00000336798 NDUFB9Q9Y6M9 179 aa14.1□□□□□ -0.15
SDC3-201ENST00000336798 MAN1A1P33908 653 aa14.1□□□□□ -0.15
SDC3-201ENST00000336798 ASIC2Q16515 512 aa14.1□□□□□ -0.15
SDC3-201ENST00000336798 CCDC110Q8TBZ0 833 aa14.1□□□□□ -0.15
SDC3-201ENST00000336798 NCOA5Q9HCD5 579 aaKnown RBP14.1□□□□□ -0.15
SDC3-201ENST00000336798 STIM2Q9P246 746 aa14.1□□□□□ -0.15
SDC3-201ENST00000336798 IVNS1ABPQ9Y6Y0 642 aa14.1□□□□□ -0.15
SDC3-201ENST00000336798 CUL4BQ13620 913 aa14.1□□□□□ -0.15
SDC3-201ENST00000336798 DHX32Q7L7V1 743 aaKnown RBP14.1□□□□□ -0.15
SDC3-201ENST00000336798 TBC1D31Q96DN5 1066 aa14.1□□□□□ -0.15
SDC3-201ENST00000336798 AKR1B15C9JRZ8 316 aaPredicted RBP14.1□□□□□ -0.15
SDC3-201ENST00000336798 GKAP1Q5VSY0 366 aaPredicted RBP14.1□□□□□ -0.15
SDC3-201ENST00000336798 NBPF11Q86T75 865 aa14.1□□□□□ -0.15
SDC3-201ENST00000336798 TTC6Q86TZ1 520 aa14.1□□□□□ -0.15
SDC3-201ENST00000336798 BAG1Q99933 345 aaPredicted RBP14.1□□□□□ -0.15
SDC3-201ENST00000336798 TBC1D8BQ0IIM8 1120 aa14.1□□□□□ -0.15
SDC3-201ENST00000336798 NELFCDQ8IXH7 590 aa14.1□□□□□ -0.15
SDC3-201ENST00000336798 RNF169Q8NCN4 708 aa14.1□□□□□ -0.15
SDC3-201ENST00000336798 MYO1AQ9UBC5 1043 aa14.1□□□□□ -0.15
SDC3-201ENST00000336798 V9GY48 417 aaPredicted RBP14.1□□□□□ -0.15
SDC3-201ENST00000336798 MAGI1Q96QZ7 1491 aaPredicted RBP14.1□□□□□ -0.15
SDC3-201ENST00000336798 EBAG9O00559 213 aa14.09□□□□□ -0.15
SDC3-201ENST00000336798 ABL1P00519 1130 aa14.09□□□□□ -0.15
SDC3-201ENST00000336798 ITGA6P23229 1130 aa14.09□□□□□ -0.15
SDC3-201ENST00000336798 LRMPQ12912 555 aa14.09□□□□□ -0.15
SDC3-201ENST00000336798 LRCH2Q5VUJ6 765 aa14.09□□□□□ -0.15
SDC3-201ENST00000336798 KRBA2Q6ZNG9 492 aa14.09□□□□□ -0.15
SDC3-201ENST00000336798 BTG4Q9NY30 223 aa14.09□□□□□ -0.15
SDC3-201ENST00000336798 ARHGEF35A5YM69 484 aa14.09□□□□□ -0.15
SDC3-201ENST00000336798 ZNF131P52739 623 aa14.09□□□□□ -0.15
SDC3-201ENST00000336798 OTUD7BQ6GQQ9 843 aa14.09□□□□□ -0.15
SDC3-201ENST00000336798 TSGA10Q9BZW7 698 aa14.09□□□□□ -0.15
SDC3-201ENST00000336798 TACC3Q9Y6A5 838 aa14.09□□□□□ -0.15
SDC3-201ENST00000336798 ARHGEF10LQ9HCE6 1279 aa14.09□□□□□ -0.15
SDC3-201ENST00000336798 NPHP3Q7Z494 1330 aa14.09□□□□□ -0.15
SDC3-201ENST00000336798 CC2D2AQ9P2K1 1620 aa14.09□□□□□ -0.15
SDC3-201ENST00000336798 IFRD2Q12894 506 aaPredicted RBP14.09□□□□□ -0.15
SDC3-201ENST00000336798 FAM76AQ8TAV0 307 aa14.09□□□□□ -0.15
SDC3-201ENST00000336798 HSPA2P54652 639 aa14.09□□□□□ -0.15
SDC3-201ENST00000336798 RDH13Q8NBN7 331 aa14.09□□□□□ -0.15
SDC3-201ENST00000336798 MYCBPQ99417 103 aaPredicted RBP14.09□□□□□ -0.15
SDC3-201ENST00000336798 HDAC1Q13547 482 aaPredicted RBP14.08□□□□□ -0.15
SDC3-201ENST00000336798 CCDC26Q8TAB7 109 aa14.08□□□□□ -0.15
SDC3-201ENST00000336798 WDR66Q8TBY9 1149 aa14.08□□□□□ -0.15
SDC3-201ENST00000336798 JAKMIP2Q96AA8 810 aa14.08□□□□□ -0.15
SDC3-201ENST00000336798 OGFRQ9NZT2 677 aa14.08□□□□□ -0.15
SDC3-201ENST00000336798 SCAF11Q99590 1463 aaKnown RBP14.08□□□□□ -0.16
SDC3-201ENST00000336798 KMT5BQ4FZB7 885 aa14.08□□□□□ -0.16
SDC3-201ENST00000336798 NSMFQ6X4W1 530 aa14.08□□□□□ -0.16
SDC3-201ENST00000336798 GPR161Q8N6U8 529 aaKnown RBP14.08□□□□□ -0.16
SDC3-201ENST00000336798 IGSF22Q8N9C0 903 aa14.08□□□□□ -0.16
SDC3-201ENST00000336798 CALUO43852 315 aaPredicted RBP14.08□□□□□ -0.16
SDC3-201ENST00000336798 MYCT1Q8N699 235 aa14.08□□□□□ -0.16
SDC3-201ENST00000336798 DENND2AQ9ULE3 1009 aa14.08□□□□□ -0.16
SDC3-201ENST00000336798 HIBADHP31937 336 aaKnown RBP14.08□□□□□ -0.16
SDC3-201ENST00000336798 KLHL7Q8IXQ5 586 aa14.08□□□□□ -0.16
SDC3-201ENST00000336798 C14orf93Q9H972 538 aaKnown RBP14.08□□□□□ -0.16
SDC3-201ENST00000336798 CCNL1Q9UK58 526 aaPredicted RBP14.08□□□□□ -0.16
SDC3-201ENST00000336798 U2AF2P26368 475 aaKnown RBP eCLIP14.08□□□□□ -0.16
SDC3-201ENST00000336798 CEP85Q6P2H3 762 aa14.08□□□□□ -0.16
SDC3-201ENST00000336798 ZNF365Q70YC5 407 aa14.08□□□□□ -0.16
SDC3-201ENST00000336798 CD19P15391 556 aa14.07□□□□□ -0.16
SDC3-201ENST00000336798 PPP2R3AQ06190 1150 aa14.07□□□□□ -0.16
SDC3-201ENST00000336798 LIN9Q5TKA1 542 aa14.07□□□□□ -0.16
SDC3-201ENST00000336798 ANKRD36BQ8N2N9 1353 aa14.07□□□□□ -0.16
SDC3-201ENST00000336798 POLR2DO15514 142 aaKnown RBP14.07□□□□□ -0.16
SDC3-201ENST00000336798 SH2D4AQ9H788 454 aa14.07□□□□□ -0.16
SDC3-201ENST00000336798 CFBP00751 764 aa14.07□□□□□ -0.16
SDC3-201ENST00000336798 DIXDC1Q155Q3 683 aa14.07□□□□□ -0.16
SDC3-201ENST00000336798 SDCCAG8Q86SQ7 713 aaPredicted RBP14.07□□□□□ -0.16
SDC3-201ENST00000336798 NOP9Q86U38 636 aaKnown RBP14.07□□□□□ -0.16
SDC3-201ENST00000336798 PLB1Q6P1J6 1458 aa14.07□□□□□ -0.16
SDC3-201ENST00000336798 KIF14Q15058 1648 aa14.07□□□□□ -0.16
SDC3-201ENST00000336798 GIPC1O14908 333 aa14.07□□□□□ -0.16
SDC3-201ENST00000336798 GCNT3O95395 438 aa14.07□□□□□ -0.16
SDC3-201ENST00000336798 STAMQ92783 540 aa14.07□□□□□ -0.16
SDC3-201ENST00000336798 UTP11Q9Y3A2 253 aaKnown RBP14.07□□□□□ -0.16
SDC3-201ENST00000336798 PLCH2O75038 1416 aa14.07□□□□□ -0.16
SDC3-201ENST00000336798 FAM47CQ5HY64 1035 aa14.06□□□□□ -0.16
SDC3-201ENST00000336798 DCUN1D2Q6PH85 259 aa14.06□□□□□ -0.16
SDC3-201ENST00000336798 LARGE2Q8N3Y3 721 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms