RNA–Protein interactions for RNA: ENST00000303450.4

HOXC9-201, Transcript of homeobox C9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC9, Length 1,516 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-201ENST00000303450 STRBPQ96SI9 672 aaKnown RBP29.4■■■□□ 2.3
HOXC9-201ENST00000303450 CDCA5Q96FF9 252 aa29.4■■■□□ 2.3
HOXC9-201ENST00000303450 FLT1P17948 1338 aa29.39■■■□□ 2.3
HOXC9-201ENST00000303450 CHMLP26374 656 aa29.39■■■□□ 2.3
HOXC9-201ENST00000303450 ZFPM1Q8IX07 1006 aa29.39■■■□□ 2.3
HOXC9-201ENST00000303450 SLC4A4Q9Y6R1 1079 aa29.39■■■□□ 2.3
HOXC9-201ENST00000303450 FOCADQ5VW36 1801 aa29.38■■■□□ 2.29
HOXC9-201ENST00000303450 PRKAB2O43741 272 aa29.38■■■□□ 2.29
HOXC9-201ENST00000303450 FMR1Q06787 632 aaKnown RBP eCLIP29.38■■■□□ 2.29
HOXC9-201ENST00000303450 ZSCAN29Q8IWY8 852 aaPredicted RBP29.38■■■□□ 2.29
HOXC9-201ENST00000303450 SDR42E1Q8WUS8 393 aa29.38■■■□□ 2.29
HOXC9-201ENST00000303450 OSBPL5Q9H0X9 879 aaPredicted RBP29.38■■■□□ 2.29
HOXC9-201ENST00000303450 GNAT2P19087 354 aa29.37■■■□□ 2.29
HOXC9-201ENST00000303450 CCDC129Q6ZRS4 1044 aa29.37■■■□□ 2.29
HOXC9-201ENST00000303450 PASKQ96RG2 1323 aa29.36■■■□□ 2.29
HOXC9-201ENST00000303450 TEPSINQ96N21 525 aa29.36■■■□□ 2.29
HOXC9-201ENST00000303450 ZNF408Q9H9D4 720 aa29.36■■■□□ 2.29
HOXC9-201ENST00000303450 NF2P35240 595 aa29.35■■■□□ 2.29
HOXC9-201ENST00000303450 SUPT20HL1Q3ZLR7 823 aa29.35■■■□□ 2.29
HOXC9-201ENST00000303450 NBPF12Q5TAG4 269 aaPredicted RBP29.35■■■□□ 2.29
HOXC9-201ENST00000303450 RUFY2Q8WXA3 655 aa29.35■■■□□ 2.29
HOXC9-201ENST00000303450 DDRGK1Q96HY6 314 aa29.35■■■□□ 2.29
HOXC9-201ENST00000303450 ATP8A2Q9NTI2 1148 aa29.35■■■□□ 2.29
HOXC9-201ENST00000303450 RPAP1Q9BWH6 1393 aaPredicted RBP29.35■■■□□ 2.29
HOXC9-201ENST00000303450 MFAP1P55081 439 aaKnown RBP29.35■■■□□ 2.29
HOXC9-201ENST00000303450 CDAN1Q8IWY9 1227 aa29.35■■■□□ 2.29
HOXC9-201ENST00000303450 APPP05067 770 aa29.34■■■□□ 2.29
HOXC9-201ENST00000303450 DCP1AQ9NPI6 582 aaPredicted RBP29.34■■■□□ 2.29
HOXC9-201ENST00000303450 SAP30BPQ9UHR5 308 aaKnown RBP29.34■■■□□ 2.29
HOXC9-201ENST00000303450 CCDC171Q6TFL3 1326 aa29.33■■■□□ 2.29
HOXC9-201ENST00000303450 DDTLA6NHG4 134 aaPredicted RBP29.33■■■□□ 2.29
HOXC9-201ENST00000303450 CELF2O95319 508 aaKnown RBP29.33■■■□□ 2.29
HOXC9-201ENST00000303450 ZNF589Q86UQ0 364 aaPredicted RBP29.33■■■□□ 2.29
HOXC9-201ENST00000303450 CSRNP1Q96S65 589 aa29.33■■■□□ 2.29
HOXC9-201ENST00000303450 DHX36Q9H2U1 1008 aaKnown RBP29.33■■■□□ 2.29
HOXC9-201ENST00000303450 MKRN1Q9UHC7 482 aaKnown RBP29.33■■■□□ 2.29
HOXC9-201ENST00000303450 MYH1P12882 1939 aa29.32■■■□□ 2.28
HOXC9-201ENST00000303450 PATL2C9JE40 543 aaKnown RBP29.32■■■□□ 2.28
HOXC9-201ENST00000303450 CDC45O75419 566 aa29.32■■■□□ 2.28
HOXC9-201ENST00000303450 CASC1Q6TDU7 716 aa29.32■■■□□ 2.28
HOXC9-201ENST00000303450 SH3BP5LQ7L8J4 393 aa29.32■■■□□ 2.28
HOXC9-201ENST00000303450 HOOK2Q96ED9 719 aa29.32■■■□□ 2.28
HOXC9-201ENST00000303450 MCM9Q9NXL9 1143 aa29.32■■■□□ 2.28
HOXC9-201ENST00000303450 PALD1Q9ULE6 856 aa29.32■■■□□ 2.28
HOXC9-201ENST00000303450 TRPM7Q96QT4 1865 aa29.32■■■□□ 2.28
HOXC9-201ENST00000303450 NAV1Q8NEY1 1877 aa29.31■■■□□ 2.28
HOXC9-201ENST00000303450 COL2A1P02458 1487 aaPredicted RBP29.31■■■□□ 2.28
HOXC9-201ENST00000303450 ATRNL1Q5VV63 1379 aa29.31■■■□□ 2.28
HOXC9-201ENST00000303450 GSG1L2A8MUP6 293 aa29.31■■■□□ 2.28
HOXC9-201ENST00000303450 NACAP1Q9BZK3 213 aa29.31■■■□□ 2.28
HOXC9-201ENST00000303450 RAD50Q92878 1312 aa29.31■■■□□ 2.28
HOXC9-201ENST00000303450 GIMAP6Q6P9H5 292 aa29.3■■■□□ 2.28
HOXC9-201ENST00000303450 POLR3DP05423 398 aaPredicted RBP29.3■■■□□ 2.28
HOXC9-201ENST00000303450 BAZ2AQ9UIF9 1905 aaKnown RBP29.29■■■□□ 2.28
HOXC9-201ENST00000303450 HLA-DOAP06340 250 aa29.29■■■□□ 2.28
HOXC9-201ENST00000303450 SLC4A8Q2Y0W8 1093 aa29.29■■■□□ 2.28
HOXC9-201ENST00000303450 CST9Q5W186 159 aa29.29■■■□□ 2.28
HOXC9-201ENST00000303450 PI4KBQ9UBF8 816 aa29.29■■■□□ 2.28
HOXC9-201ENST00000303450 PPP1R12BO60237 982 aaPredicted RBP29.28■■■□□ 2.28
HOXC9-201ENST00000303450 TDO2P48775 406 aa29.28■■■□□ 2.28
HOXC9-201ENST00000303450 PRKG1Q13976 671 aa29.28■■■□□ 2.28
HOXC9-201ENST00000303450 TTLL12Q14166 644 aaPredicted RBP29.28■■■□□ 2.28
HOXC9-201ENST00000303450 VPS53Q5VIR6 699 aa29.28■■■□□ 2.28
HOXC9-201ENST00000303450 TTC6Q86TZ1 520 aa29.28■■■□□ 2.28
HOXC9-201ENST00000303450 AMOTL1Q8IY63 956 aa29.28■■■□□ 2.28
HOXC9-201ENST00000303450 IFNL3Q8IZI9 196 aa29.28■■■□□ 2.28
HOXC9-201ENST00000303450 SSC5DA1L4H1 1573 aa29.27■■■□□ 2.28
HOXC9-201ENST00000303450 C1QTNF8P60827 252 aa29.27■■■□□ 2.28
HOXC9-201ENST00000303450 DCAF15Q66K64 600 aa29.27■■■□□ 2.28
HOXC9-201ENST00000303450 IL25Q9H293 177 aa29.27■■■□□ 2.28
HOXC9-201ENST00000303450 GBA2Q9HCG7 927 aaPredicted RBP29.27■■■□□ 2.28
HOXC9-201ENST00000303450 EPB41L4AQ9HCS5 686 aaPredicted RBP29.27■■■□□ 2.28
HOXC9-201ENST00000303450 SGSM2O43147 1006 aa29.26■■■□□ 2.27
HOXC9-201ENST00000303450 HSPD1P10809 573 aaKnown RBP29.26■■■□□ 2.27
HOXC9-201ENST00000303450 MIGA2Q7L4E1 593 aa29.26■■■□□ 2.27
HOXC9-201ENST00000303450 C2orf69Q8N8R5 385 aa29.26■■■□□ 2.27
HOXC9-201ENST00000303450 NAPBQ9H115 298 aa29.26■■■□□ 2.27
HOXC9-201ENST00000303450 TMEM88BA6NKF7 163 aa29.25■■■□□ 2.27
HOXC9-201ENST00000303450 USP17L12C9JPN9 530 aa29.25■■■□□ 2.27
HOXC9-201ENST00000303450 USP17L21D6R901 530 aa29.25■■■□□ 2.27
HOXC9-201ENST00000303450 APLP1P51693 650 aa29.25■■■□□ 2.27
HOXC9-201ENST00000303450 ESYT1Q9BSJ8 1104 aa29.25■■■□□ 2.27
HOXC9-201ENST00000303450 ARPP21Q9UBL0 812 aaPredicted RBP29.25■■■□□ 2.27
HOXC9-201ENST00000303450 DDX60LQ5H9U9 1706 aaKnown RBP29.25■■■□□ 2.27
HOXC9-201ENST00000303450 FOXP2O15409 715 aa29.25■■■□□ 2.27
HOXC9-201ENST00000303450 FKBP1BP68106 108 aa29.24■■■□□ 2.27
HOXC9-201ENST00000303450 CTR9Q6PD62 1173 aa29.24■■■□□ 2.27
HOXC9-201ENST00000303450 ARMC9Q7Z3E5 817 aa29.24■■■□□ 2.27
HOXC9-201ENST00000303450 FOXP4Q8IVH2 680 aaPredicted RBP29.24■■■□□ 2.27
HOXC9-201ENST00000303450 CRACR2BQ8N4Y2 399 aaPredicted RBP29.24■■■□□ 2.27
HOXC9-201ENST00000303450 TRIM34Q9BYJ4 488 aa29.24■■■□□ 2.27
HOXC9-201ENST00000303450 ANGEL1Q9UNK9 670 aaKnown RBP29.24■■■□□ 2.27
HOXC9-201ENST00000303450 FZD1Q9UP38 647 aa29.24■■■□□ 2.27
HOXC9-201ENST00000303450 CYP2D6P10635 497 aa29.23■■■□□ 2.27
HOXC9-201ENST00000303450 PLCD1P51178 756 aa29.23■■■□□ 2.27
HOXC9-201ENST00000303450 ZNF341Q9BYN7 854 aa29.22■■■□□ 2.27
HOXC9-201ENST00000303450 XPO5Q9HAV4 1204 aaKnown RBP eCLIP29.22■■■□□ 2.27
HOXC9-201ENST00000303450 HERC5Q9UII4 1024 aaKnown RBP29.22■■■□□ 2.27
HOXC9-201ENST00000303450 SERPINB13Q9UIV8 391 aa29.22■■■□□ 2.27
HOXC9-201ENST00000303450 CYP2D7A0A087X1C5 515 aa29.21■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms