RNA–Protein interactions for RNA: ENST00000285116.7

SKA1-201, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SKA1, Length 2,905 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-201ENST00000285116 PUS3Q9BZE2 481 aaKnown RBP11.93□□□□□ -0.5
SKA1-201ENST00000285116 NBPF3Q9H094 633 aa11.93□□□□□ -0.5
SKA1-201ENST00000285116 POLR3GO15318 223 aaPredicted RBP11.93□□□□□ -0.5
SKA1-201ENST00000285116 CUTAO60888 179 aa11.93□□□□□ -0.5
SKA1-201ENST00000285116 ADD2P35612 726 aa11.93□□□□□ -0.5
SKA1-201ENST00000285116 HOMER1Q86YM7 354 aa11.93□□□□□ -0.5
SKA1-201ENST00000285116 ZNF594Q96JF6 807 aaPredicted RBP11.93□□□□□ -0.5
SKA1-201ENST00000285116 PCNTO95613 3336 aa11.92□□□□□ -0.5
SKA1-201ENST00000285116 EFCAB8A8MWE9 144 aa11.92□□□□□ -0.5
SKA1-201ENST00000285116 CPLX1O14810 134 aa11.92□□□□□ -0.5
SKA1-201ENST00000285116 GPAA1O43292 621 aa11.92□□□□□ -0.5
SKA1-201ENST00000285116 FOSBP53539 338 aa11.92□□□□□ -0.5
SKA1-201ENST00000285116 FANCCQ00597 558 aa11.92□□□□□ -0.5
SKA1-201ENST00000285116 CHST3Q7LGC8 479 aa11.92□□□□□ -0.5
SKA1-201ENST00000285116 TMC6Q7Z403 805 aa11.92□□□□□ -0.5
SKA1-201ENST00000285116 PLCD3Q8N3E9 789 aa11.92□□□□□ -0.5
SKA1-201ENST00000285116 NEK11Q8NG66 645 aa11.92□□□□□ -0.5
SKA1-201ENST00000285116 ZCRB1Q8TBF4 217 aaKnown RBP11.92□□□□□ -0.5
SKA1-201ENST00000285116 MTA3Q9BTC8 594 aa11.92□□□□□ -0.5
SKA1-201ENST00000285116 PLCH1Q4KWH8 1693 aa11.92□□□□□ -0.5
SKA1-201ENST00000285116 TOM1O60784 492 aa11.92□□□□□ -0.5
SKA1-201ENST00000285116 WDHD1O75717 1129 aaPredicted RBP11.92□□□□□ -0.5
SKA1-201ENST00000285116 MYL5Q02045 173 aa11.92□□□□□ -0.5
SKA1-201ENST00000285116 ZBTB38Q8NAP3 1195 aaPredicted RBP11.92□□□□□ -0.5
SKA1-201ENST00000285116 TEX13AQ9BXU3 409 aaPredicted RBP11.92□□□□□ -0.5
SKA1-201ENST00000285116 PUS7LQ9H0K6 701 aaKnown RBP11.92□□□□□ -0.5
SKA1-201ENST00000285116 GPHNQ9NQX3 736 aaPredicted RBP11.92□□□□□ -0.5
SKA1-201ENST00000285116 RIPOR2Q9Y4F9 1068 aa11.92□□□□□ -0.5
SKA1-201ENST00000285116 ITGB4P16144 1822 aa11.91□□□□□ -0.5
SKA1-201ENST00000285116 TADA3O75528 432 aa11.91□□□□□ -0.5
SKA1-201ENST00000285116 SMC2O95347 1197 aa11.91□□□□□ -0.5
SKA1-201ENST00000285116 ADORA1P30542 326 aa11.91□□□□□ -0.5
SKA1-201ENST00000285116 SYKP43405 635 aa11.91□□□□□ -0.5
SKA1-201ENST00000285116 RCAN1P53805 252 aa11.91□□□□□ -0.5
SKA1-201ENST00000285116 MEX3CQ5U5Q3 659 aaKnown RBP11.91□□□□□ -0.5
SKA1-201ENST00000285116 EFCC1Q9HA90 598 aa11.91□□□□□ -0.5
SKA1-201ENST00000285116 DNAI1Q9UI46 699 aa11.91□□□□□ -0.5
SKA1-201ENST00000285116 LIFRP42702 1097 aa11.91□□□□□ -0.5
SKA1-201ENST00000285116 FKBP4Q02790 459 aaKnown RBP eCLIP11.91□□□□□ -0.5
SKA1-201ENST00000285116 NT5DC1Q5TFE4 455 aa11.91□□□□□ -0.5
SKA1-201ENST00000285116 CPLX2Q6PUV4 134 aaKnown RBP11.91□□□□□ -0.5
SKA1-201ENST00000285116 KRBA2Q6ZNG9 492 aa11.91□□□□□ -0.5
SKA1-201ENST00000285116 VSTM4Q8IW00 320 aa11.91□□□□□ -0.5
SKA1-201ENST00000285116 RASSF4Q9H2L5 321 aa11.91□□□□□ -0.5
SKA1-201ENST00000285116 CWC15Q9P013 229 aaKnown RBP11.91□□□□□ -0.5
SKA1-201ENST00000285116 LAMB2P55268 1798 aa11.9□□□□□ -0.5
SKA1-201ENST00000285116 POLR3DP05423 398 aaPredicted RBP11.9□□□□□ -0.5
SKA1-201ENST00000285116 ARID4AP29374 1257 aaPredicted RBP11.9□□□□□ -0.5
SKA1-201ENST00000285116 ZAP70P43403 619 aa11.9□□□□□ -0.5
SKA1-201ENST00000285116 SCARF1Q14162 830 aa11.9□□□□□ -0.5
SKA1-201ENST00000285116 NTRK3Q16288 839 aa11.9□□□□□ -0.5
SKA1-201ENST00000285116 WASHC4Q2M389 1173 aa11.9□□□□□ -0.5
SKA1-201ENST00000285116 CT47A1Q5JQC4 288 aaPredicted RBP11.9□□□□□ -0.5
SKA1-201ENST00000285116 GORABQ5T7V8 394 aa11.9□□□□□ -0.5
SKA1-201ENST00000285116 SHC4Q6S5L8 630 aa11.9□□□□□ -0.5
SKA1-201ENST00000285116 VPS37DQ86XT2 251 aa11.9□□□□□ -0.5
SKA1-201ENST00000285116 VGLL2Q8N8G2 317 aa11.9□□□□□ -0.5
SKA1-201ENST00000285116 SMARCE1Q969G3 411 aa11.9□□□□□ -0.5
SKA1-201ENST00000285116 NUP98P52948 1817 aa11.9□□□□□ -0.5
SKA1-201ENST00000285116 A0A087WWV3 80 aa11.9□□□□□ -0.5
SKA1-201ENST00000285116 GOLGA6L9A6NEM1 432 aa11.9□□□□□ -0.5
SKA1-201ENST00000285116 A1BGP04217 495 aa11.9□□□□□ -0.5
SKA1-201ENST00000285116 TRDNQ13061 729 aa11.9□□□□□ -0.5
SKA1-201ENST00000285116 TBX2Q13207 712 aaPredicted RBP11.9□□□□□ -0.5
SKA1-201ENST00000285116 MAPK8IP2Q13387 824 aaPredicted RBP11.9□□□□□ -0.5
SKA1-201ENST00000285116 APOA5Q6Q788 366 aa11.9□□□□□ -0.5
SKA1-201ENST00000285116 ALG1Q9BT22 464 aa11.9□□□□□ -0.5
SKA1-201ENST00000285116 OAS2P29728 719 aaKnown RBP11.9□□□□□ -0.51
SKA1-201ENST00000285116 TNNT3P45378 269 aaPredicted RBP11.9□□□□□ -0.51
SKA1-201ENST00000285116 METAP2P50579 478 aaKnown RBP eCLIP11.9□□□□□ -0.51
SKA1-201ENST00000285116 MDM2Q00987 491 aaPredicted RBP11.9□□□□□ -0.51
SKA1-201ENST00000285116 KRT40Q6A162 431 aa11.9□□□□□ -0.51
SKA1-201ENST00000285116 OTUD7BQ6GQQ9 843 aa11.9□□□□□ -0.51
SKA1-201ENST00000285116 DLEC1Q9Y238 1755 aa11.9□□□□□ -0.51
SKA1-201ENST00000285116 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.89□□□□□ -0.51
SKA1-201ENST00000285116 TBC1D8O95759 1140 aa11.89□□□□□ -0.51
SKA1-201ENST00000285116 ST5P78524 1137 aa11.89□□□□□ -0.51
SKA1-201ENST00000285116 IFIT5Q13325 482 aaKnown RBP11.89□□□□□ -0.51
SKA1-201ENST00000285116 ZSCAN26Q16670 478 aa11.89□□□□□ -0.51
SKA1-201ENST00000285116 TRIM65Q6PJ69 517 aa11.89□□□□□ -0.51
SKA1-201ENST00000285116 ZNF579Q8NAF0 562 aaKnown RBP11.89□□□□□ -0.51
SKA1-201ENST00000285116 IGDCC4Q8TDY8 1250 aa11.89□□□□□ -0.51
SKA1-201ENST00000285116 AK7Q96M32 723 aa11.89□□□□□ -0.51
SKA1-201ENST00000285116 ZBTB3Q9H5J0 574 aa11.89□□□□□ -0.51
SKA1-201ENST00000285116 TCRBV5S4A2TA0A5A2 114 aa11.89□□□□□ -0.51
SKA1-201ENST00000285116 URI1O94763 535 aaPredicted RBP11.89□□□□□ -0.51
SKA1-201ENST00000285116 MCAMP43121 646 aa11.89□□□□□ -0.51
SKA1-201ENST00000285116 HAND2P61296 217 aa11.89□□□□□ -0.51
SKA1-201ENST00000285116 SMC1AQ14683 1233 aaKnown RBP11.89□□□□□ -0.51
SKA1-201ENST00000285116 TBC1D10CQ8IV04 446 aa11.89□□□□□ -0.51
SKA1-201ENST00000285116 TRIML1Q8N9V2 468 aa11.89□□□□□ -0.51
SKA1-201ENST00000285116 WASF1Q92558 559 aa11.89□□□□□ -0.51
SKA1-201ENST00000285116 CARD10Q9BWT7 1032 aa11.89□□□□□ -0.51
SKA1-201ENST00000285116 PSD3Q9NYI0 1048 aa11.89□□□□□ -0.51
SKA1-201ENST00000285116 SEC31AO94979 1220 aaKnown RBP11.88□□□□□ -0.51
SKA1-201ENST00000285116 CC2D1AQ6P1N0 951 aaPredicted RBP11.88□□□□□ -0.51
SKA1-201ENST00000285116 CYB5R4Q7L1T6 521 aa11.88□□□□□ -0.51
SKA1-201ENST00000285116 TMEM139Q8IV31 216 aa11.88□□□□□ -0.51
SKA1-201ENST00000285116 GPR161Q8N6U8 529 aaKnown RBP11.88□□□□□ -0.51
SKA1-201ENST00000285116 GOLGA5Q8TBA6 731 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms