RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 MTA3Q9BTC8 594 aa16.64■□□□□ 0.25
SS18-201ENST00000269137 MXD3Q9BW11 206 aa16.64■□□□□ 0.25
SS18-201ENST00000269137 PPP1R1BQ9UD71 204 aaPredicted RBP16.64■□□□□ 0.25
SS18-201ENST00000269137 USP5P45974 858 aa16.63■□□□□ 0.25
SS18-201ENST00000269137 CYB5R4Q7L1T6 521 aa16.63■□□□□ 0.25
SS18-201ENST00000269137 NECAB1Q8N987 351 aa16.63■□□□□ 0.25
SS18-201ENST00000269137 PSME4Q14997 1843 aa16.63■□□□□ 0.25
SS18-201ENST00000269137 YDJCA8MPS7 323 aa16.63■□□□□ 0.25
SS18-201ENST00000269137 PFKFB2O60825 505 aa16.63■□□□□ 0.25
SS18-201ENST00000269137 NBR1Q14596 966 aa16.63■□□□□ 0.25
SS18-201ENST00000269137 TEX11Q8IYF3 940 aa16.63■□□□□ 0.25
SS18-201ENST00000269137 LARGE2Q8N3Y3 721 aa16.63■□□□□ 0.25
SS18-201ENST00000269137 NKX2-3Q8TAU0 364 aa16.63■□□□□ 0.25
SS18-201ENST00000269137 GTF3C6Q969F1 213 aa16.63■□□□□ 0.25
SS18-201ENST00000269137 CDK5RAP2Q96SN8 1893 aa16.63■□□□□ 0.25
SS18-201ENST00000269137 INCENPQ9NQS7 918 aa16.63■□□□□ 0.25
SS18-201ENST00000269137 ZNF277Q9NRM2 450 aaPredicted RBP16.63■□□□□ 0.25
SS18-201ENST00000269137 MCM9Q9NXL9 1143 aa16.63■□□□□ 0.25
SS18-201ENST00000269137 ZSWIM5Q9P217 1185 aa16.63■□□□□ 0.25
SS18-201ENST00000269137 FER1L6Q2WGJ9 1857 aa16.62■□□□□ 0.25
SS18-201ENST00000269137 LAMB1P07942 1786 aa16.62■□□□□ 0.25
SS18-201ENST00000269137 CYP2D7A0A087X1C5 515 aa16.62■□□□□ 0.25
SS18-201ENST00000269137 F8W031 263 aaPredicted RBP16.62■□□□□ 0.25
SS18-201ENST00000269137 KDM4AO75164 1064 aa16.62■□□□□ 0.25
SS18-201ENST00000269137 SLC3A2P08195 630 aaKnown RBP16.62■□□□□ 0.25
SS18-201ENST00000269137 NT5C2P49902 561 aa16.62■□□□□ 0.25
SS18-201ENST00000269137 APOBRQ0VD83 1088 aa16.62■□□□□ 0.25
SS18-201ENST00000269137 TGFBRAP1Q8WUH2 860 aa16.62■□□□□ 0.25
SS18-201ENST00000269137 TEKT1Q969V4 418 aa16.62■□□□□ 0.25
SS18-201ENST00000269137 CHMP4CQ96CF2 233 aa16.62■□□□□ 0.25
SS18-201ENST00000269137 ANGEL1Q9UNK9 670 aaKnown RBP16.62■□□□□ 0.25
SS18-201ENST00000269137 SMC3Q9UQE7 1217 aa16.62■□□□□ 0.25
SS18-201ENST00000269137 SH2B2O14492 632 aaPredicted RBP16.61■□□□□ 0.25
SS18-201ENST00000269137 ORC4O43929 436 aa16.61■□□□□ 0.25
SS18-201ENST00000269137 C12orf60Q5U649 245 aa16.61■□□□□ 0.25
SS18-201ENST00000269137 IGDCC4Q8TDY8 1250 aa16.61■□□□□ 0.25
SS18-201ENST00000269137 ZDHHC15Q96MV8 337 aa16.61■□□□□ 0.25
SS18-201ENST00000269137 SPON1Q9HCB6 807 aa16.61■□□□□ 0.25
SS18-201ENST00000269137 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.61■□□□□ 0.25
SS18-201ENST00000269137 GOLGB1Q14789 3259 aaKnown RBP16.61■□□□□ 0.25
SS18-201ENST00000269137 PDIA3P30101 505 aaKnown RBP16.61■□□□□ 0.25
SS18-201ENST00000269137 IARSP41252 1262 aaKnown RBP16.61■□□□□ 0.25
SS18-201ENST00000269137 LIFRP42702 1097 aa16.61■□□□□ 0.25
SS18-201ENST00000269137 AMOTL1Q8IY63 956 aa16.61■□□□□ 0.25
SS18-201ENST00000269137 ESR2Q92731 530 aa16.61■□□□□ 0.25
SS18-201ENST00000269137 TAOK3Q9H2K8 898 aa16.61■□□□□ 0.25
SS18-201ENST00000269137 GPHNQ9NQX3 736 aaPredicted RBP16.61■□□□□ 0.25
SS18-201ENST00000269137 SMIM22K7EJ46 135 aa16.6■□□□□ 0.25
SS18-201ENST00000269137 USP17L8P0C7I0 530 aa16.6■□□□□ 0.25
SS18-201ENST00000269137 CRKP46108 304 aa16.6■□□□□ 0.25
SS18-201ENST00000269137 SCNN1DP51172 638 aa16.6■□□□□ 0.25
SS18-201ENST00000269137 APOBEC3HQ6NTF7 200 aaKnown RBP16.6■□□□□ 0.25
SS18-201ENST00000269137 KLHL34Q8N239 644 aa16.6■□□□□ 0.25
SS18-201ENST00000269137 SERPINA10Q9UK55 444 aa16.6■□□□□ 0.25
SS18-201ENST00000269137 ZNRF3Q9ULT6 936 aa16.6■□□□□ 0.25
SS18-201ENST00000269137 NAV1Q8NEY1 1877 aa16.6■□□□□ 0.25
SS18-201ENST00000269137 MYO3BQ8WXR4 1341 aa16.6■□□□□ 0.25
SS18-201ENST00000269137 ROBO3Q96MS0 1386 aa16.6■□□□□ 0.25
SS18-201ENST00000269137 FOCADQ5VW36 1801 aa16.59■□□□□ 0.25
SS18-201ENST00000269137 VIL1P09327 827 aaKnown RBP16.59■□□□□ 0.25
SS18-201ENST00000269137 CYP2D6P10635 497 aa16.59■□□□□ 0.25
SS18-201ENST00000269137 STK3Q13188 491 aa16.59■□□□□ 0.25
SS18-201ENST00000269137 SART3Q15020 963 aaKnown RBP16.59■□□□□ 0.25
SS18-201ENST00000269137 NFKBIBQ15653 356 aa16.59■□□□□ 0.25
SS18-201ENST00000269137 RRP12Q5JTH9 1297 aaKnown RBP16.59■□□□□ 0.25
SS18-201ENST00000269137 SGMS1Q86VZ5 419 aa16.59■□□□□ 0.25
SS18-201ENST00000269137 KIAA0825Q8IV33 1275 aa16.59■□□□□ 0.25
SS18-201ENST00000269137 MAPKAPK5Q8IW41 473 aa16.59■□□□□ 0.25
SS18-201ENST00000269137 LLPHQ9BRT6 129 aaKnown RBP16.59■□□□□ 0.25
SS18-201ENST00000269137 TOMM22Q9NS69 142 aa16.59■□□□□ 0.25
SS18-201ENST00000269137 BRPF3Q9ULD4 1205 aa16.59■□□□□ 0.25
SS18-201ENST00000269137 COL4A5P29400 1685 aa16.59■□□□□ 0.25
SS18-201ENST00000269137 FLT1P17948 1338 aa16.59■□□□□ 0.25
SS18-201ENST00000269137 LTBP3Q9NS15 1303 aa16.59■□□□□ 0.25
SS18-201ENST00000269137 PDE4BQ07343 736 aa16.59■□□□□ 0.25
SS18-201ENST00000269137 SCRN1Q12765 414 aa16.59■□□□□ 0.25
SS18-201ENST00000269137 TMEM67Q5HYA8 995 aa16.59■□□□□ 0.25
SS18-201ENST00000269137 NIM1KQ8IY84 436 aa16.59■□□□□ 0.25
SS18-201ENST00000269137 TNPO1Q92973 898 aaKnown RBP16.59■□□□□ 0.25
SS18-201ENST00000269137 LY9Q9HBG7 655 aa16.59■□□□□ 0.25
SS18-201ENST00000269137 BCS1LQ9Y276 419 aa16.59■□□□□ 0.25
SS18-201ENST00000269137 DDX60LQ5H9U9 1706 aaKnown RBP16.58■□□□□ 0.24
SS18-201ENST00000269137 KLF18A0A0U1RQI7 1052 aa16.58■□□□□ 0.24
SS18-201ENST00000269137 NFKBIEO00221 500 aa16.58■□□□□ 0.24
SS18-201ENST00000269137 IFIT3O14879 490 aaKnown RBP16.58■□□□□ 0.24
SS18-201ENST00000269137 PDIA4P13667 645 aaKnown RBP16.58■□□□□ 0.24
SS18-201ENST00000269137 GJB2P29033 226 aa16.58■□□□□ 0.24
SS18-201ENST00000269137 PKP1Q13835 747 aa16.58■□□□□ 0.24
SS18-201ENST00000269137 RSBN1LQ6PCB5 846 aaPredicted RBP16.58■□□□□ 0.24
SS18-201ENST00000269137 TMTC2Q8N394 836 aa16.58■□□□□ 0.24
SS18-201ENST00000269137 USP40Q9NVE5 1235 aa16.58■□□□□ 0.24
SS18-201ENST00000269137 ZDHHC9Q9Y397 364 aa16.58■□□□□ 0.24
SS18-201ENST00000269137 WDHD1O75717 1129 aaPredicted RBP16.57■□□□□ 0.24
SS18-201ENST00000269137 BRD1O95696 1058 aa16.57■□□□□ 0.24
SS18-201ENST00000269137 CDC42EP5Q6NZY7 148 aa16.57■□□□□ 0.24
SS18-201ENST00000269137 CLEC17AQ6ZS10 378 aa16.57■□□□□ 0.24
SS18-201ENST00000269137 STK11IPQ8N1F8 1099 aa16.57■□□□□ 0.24
SS18-201ENST00000269137 GMLQ99445 158 aa16.57■□□□□ 0.24
SS18-201ENST00000269137 HPS5Q9UPZ3 1129 aa16.57■□□□□ 0.24
SS18-201ENST00000269137 ARFGEF1Q9Y6D6 1849 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms