RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 ZNF165P49910 485 aa12.97□□□□□ -0.33
MSH3-201ENST00000265081 FUT2Q10981 343 aa12.97□□□□□ -0.33
MSH3-201ENST00000265081 TBC1D9BQ66K14 1250 aa12.97□□□□□ -0.33
MSH3-201ENST00000265081 FAM84BQ96KN1 310 aaPredicted RBP12.97□□□□□ -0.33
MSH3-201ENST00000265081 ROBO3Q96MS0 1386 aa12.97□□□□□ -0.33
MSH3-201ENST00000265081 PRKAB2O43741 272 aa12.97□□□□□ -0.33
MSH3-201ENST00000265081 RBM6P78332 1123 aaKnown RBP12.97□□□□□ -0.33
MSH3-201ENST00000265081 CTDSPL2Q05D32 466 aa12.97□□□□□ -0.33
MSH3-201ENST00000265081 RESP18Q5W5W9 173 aa12.97□□□□□ -0.33
MSH3-201ENST00000265081 TMTC2Q8N394 836 aa12.97□□□□□ -0.33
MSH3-201ENST00000265081 FSIP1Q8NA03 581 aa12.97□□□□□ -0.33
MSH3-201ENST00000265081 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.97□□□□□ -0.33
MSH3-201ENST00000265081 NYXQ9GZU5 481 aa12.97□□□□□ -0.33
MSH3-201ENST00000265081 DNAJC25Q9H1X3 360 aa12.97□□□□□ -0.33
MSH3-201ENST00000265081 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.97□□□□□ -0.33
MSH3-201ENST00000265081 WDHD1O75717 1129 aaPredicted RBP12.97□□□□□ -0.33
MSH3-201ENST00000265081 CCDC73Q6ZRK6 1079 aa12.97□□□□□ -0.33
MSH3-201ENST00000265081 VPS37DQ86XT2 251 aa12.97□□□□□ -0.33
MSH3-201ENST00000265081 ANKRD18AQ8IVF6 992 aa12.97□□□□□ -0.33
MSH3-201ENST00000265081 ALG1Q9BT22 464 aa12.97□□□□□ -0.33
MSH3-201ENST00000265081 PPARAQ07869 468 aa12.96□□□□□ -0.33
MSH3-201ENST00000265081 NOLC1Q14978 699 aaKnown RBP eCLIP12.96□□□□□ -0.33
MSH3-201ENST00000265081 OTUD7BQ6GQQ9 843 aa12.96□□□□□ -0.33
MSH3-201ENST00000265081 RNF41Q9H4P4 317 aaPredicted RBP12.96□□□□□ -0.33
MSH3-201ENST00000265081 MMP1P03956 469 aa12.96□□□□□ -0.33
MSH3-201ENST00000265081 GUCY1B3Q02153 619 aa12.96□□□□□ -0.33
MSH3-201ENST00000265081 TMEM67Q5HYA8 995 aa12.96□□□□□ -0.33
MSH3-201ENST00000265081 MFSD6Q6ZSS7 791 aa12.96□□□□□ -0.33
MSH3-201ENST00000265081 C15orf52Q6ZUT6 534 aaKnown RBP12.96□□□□□ -0.33
MSH3-201ENST00000265081 NACAP1Q9BZK3 213 aa12.96□□□□□ -0.33
MSH3-201ENST00000265081 KIAA1468Q9P260 1216 aa12.96□□□□□ -0.33
MSH3-201ENST00000265081 SLC4A4Q9Y6R1 1079 aa12.96□□□□□ -0.33
MSH3-201ENST00000265081 KAT6BQ8WYB5 2073 aa12.96□□□□□ -0.34
MSH3-201ENST00000265081 FOXP1Q9H334 677 aaPredicted RBP12.96□□□□□ -0.34
MSH3-201ENST00000265081 INCENPQ9NQS7 918 aa12.96□□□□□ -0.34
MSH3-201ENST00000265081 ANO10Q9NW15 660 aa12.96□□□□□ -0.34
MSH3-201ENST00000265081 ONECUT3O60422 494 aaPredicted RBP12.95□□□□□ -0.34
MSH3-201ENST00000265081 GJB4Q9NTQ9 266 aa12.95□□□□□ -0.34
MSH3-201ENST00000265081 CPLX1O14810 134 aa12.95□□□□□ -0.34
MSH3-201ENST00000265081 WASF1Q92558 559 aa12.95□□□□□ -0.34
MSH3-201ENST00000265081 SHISA4Q96DD7 197 aa12.95□□□□□ -0.34
MSH3-201ENST00000265081 SPATA31A6Q5VVP1 1343 aa12.95□□□□□ -0.34
MSH3-201ENST00000265081 GOLGA6L6A8MZA4 724 aa12.95□□□□□ -0.34
MSH3-201ENST00000265081 KINO60870 393 aaKnown RBP12.95□□□□□ -0.34
MSH3-201ENST00000265081 CRACR2BQ8N4Y2 399 aaPredicted RBP12.95□□□□□ -0.34
MSH3-201ENST00000265081 AIFM3Q96NN9 605 aa12.95□□□□□ -0.34
MSH3-201ENST00000265081 TTC12Q9H892 705 aaPredicted RBP12.95□□□□□ -0.34
MSH3-201ENST00000265081 GOLGA8AA7E2F4 631 aa12.94□□□□□ -0.34
MSH3-201ENST00000265081 ORC4O43929 436 aa12.94□□□□□ -0.34
MSH3-201ENST00000265081 ME1P48163 572 aa12.94□□□□□ -0.34
MSH3-201ENST00000265081 SHC4Q6S5L8 630 aa12.94□□□□□ -0.34
MSH3-201ENST00000265081 NSUN4Q96CB9 384 aaKnown RBP12.94□□□□□ -0.34
MSH3-201ENST00000265081 NAP1L5Q96NT1 182 aaPredicted RBP12.94□□□□□ -0.34
MSH3-201ENST00000265081 MDM2Q00987 491 aaPredicted RBP12.94□□□□□ -0.34
MSH3-201ENST00000265081 SBK1Q52WX2 424 aa12.94□□□□□ -0.34
MSH3-201ENST00000265081 CELF1Q92879 486 aaKnown RBP12.94□□□□□ -0.34
MSH3-201ENST00000265081 ANKRD31Q8N7Z5 1873 aa12.94□□□□□ -0.34
MSH3-201ENST00000265081 PFKFB1P16118 471 aa12.94□□□□□ -0.34
MSH3-201ENST00000265081 IARSP41252 1262 aaKnown RBP12.94□□□□□ -0.34
MSH3-201ENST00000265081 TOB1P50616 345 aaPredicted RBP12.94□□□□□ -0.34
MSH3-201ENST00000265081 NT5DC1Q5TFE4 455 aa12.94□□□□□ -0.34
MSH3-201ENST00000265081 GNL3LQ9NVN8 582 aaKnown RBP12.94□□□□□ -0.34
MSH3-201ENST00000265081 MKRN1Q9UHC7 482 aaKnown RBP12.94□□□□□ -0.34
MSH3-201ENST00000265081 PYCARDQ9ULZ3 195 aa12.94□□□□□ -0.34
MSH3-201ENST00000265081 SLC12A7Q9Y666 1083 aa12.94□□□□□ -0.34
MSH3-201ENST00000265081 MAGEB6P1A0A0J9YX57 407 aa12.93□□□□□ -0.34
MSH3-201ENST00000265081 ZNF579Q8NAF0 562 aaKnown RBP12.93□□□□□ -0.34
MSH3-201ENST00000265081 PRIMPOLQ96LW4 560 aa12.93□□□□□ -0.34
MSH3-201ENST00000265081 HSD3B7Q9H2F3 369 aa12.93□□□□□ -0.34
MSH3-201ENST00000265081 TOM1O60784 492 aa12.93□□□□□ -0.34
MSH3-201ENST00000265081 CEBPZQ03701 1054 aaKnown RBP12.93□□□□□ -0.34
MSH3-201ENST00000265081 NCAPHQ15003 741 aa12.93□□□□□ -0.34
MSH3-201ENST00000265081 RNF26Q9BY78 433 aaPredicted RBP12.93□□□□□ -0.34
MSH3-201ENST00000265081 BRWD3Q6RI45 1802 aa12.93□□□□□ -0.34
MSH3-201ENST00000265081 CUTAO60888 179 aa12.93□□□□□ -0.34
MSH3-201ENST00000265081 ZNF202O95125 648 aa12.93□□□□□ -0.34
MSH3-201ENST00000265081 NLRP12P59046 1061 aa12.93□□□□□ -0.34
MSH3-201ENST00000265081 SSRP1Q08945 709 aaKnown RBP12.93□□□□□ -0.34
MSH3-201ENST00000265081 CPLX2Q6PUV4 134 aaKnown RBP12.93□□□□□ -0.34
MSH3-201ENST00000265081 NOSTRINQ8IVI9 506 aa12.93□□□□□ -0.34
MSH3-201ENST00000265081 PHKBQ93100 1093 aa12.93□□□□□ -0.34
MSH3-201ENST00000265081 ANKRD2Q9GZV1 360 aa12.93□□□□□ -0.34
MSH3-201ENST00000265081 GREB1LQ9C091 1923 aaPredicted RBP12.93□□□□□ -0.34
MSH3-201ENST00000265081 WTIPA6NIX2 430 aaPredicted RBP12.93□□□□□ -0.34
MSH3-201ENST00000265081 IFIT3O14879 490 aaKnown RBP12.93□□□□□ -0.34
MSH3-201ENST00000265081 DEXIO95424 95 aa12.93□□□□□ -0.34
MSH3-201ENST00000265081 APPP05067 770 aa12.93□□□□□ -0.34
MSH3-201ENST00000265081 PTMAP06454 111 aaKnown RBP12.93□□□□□ -0.34
MSH3-201ENST00000265081 GYG1P46976 350 aa12.93□□□□□ -0.34
MSH3-201ENST00000265081 STK38Q15208 465 aa12.93□□□□□ -0.34
MSH3-201ENST00000265081 SF3A1Q15459 793 aaKnown RBP12.93□□□□□ -0.34
MSH3-201ENST00000265081 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.93□□□□□ -0.34
MSH3-201ENST00000265081 A0A1B0GVL5 298 aa12.92□□□□□ -0.34
MSH3-201ENST00000265081 IKBKBO14920 756 aa12.92□□□□□ -0.34
MSH3-201ENST00000265081 POLR3DP05423 398 aaPredicted RBP12.92□□□□□ -0.34
MSH3-201ENST00000265081 PKN1Q16512 942 aa12.92□□□□□ -0.34
MSH3-201ENST00000265081 FAM98CQ17RN3 349 aaKnown RBP12.92□□□□□ -0.34
MSH3-201ENST00000265081 PTF1AQ7RTS3 328 aa12.92□□□□□ -0.34
MSH3-201ENST00000265081 AMIGO3Q86WK7 504 aa12.92□□□□□ -0.34
MSH3-201ENST00000265081 STK11IPQ8N1F8 1099 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms