RNA–Protein interactions for RNA: ENST00000258607.9

CKAP2-201, Transcript of cytoskeleton associated protein 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CKAP2, Length 3,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP2-201ENST00000258607 ZFP91Q96JP5 570 aaPredicted RBP10.56□□□□□ -0.72
CKAP2-201ENST00000258607 PCDHA7Q9UN72 937 aa10.56□□□□□ -0.72
CKAP2-201ENST00000258607 KIF3AQ9Y496 699 aa10.56□□□□□ -0.72
CKAP2-201ENST00000258607 AFDNP55196 1824 aaKnown RBP10.55□□□□□ -0.72
CKAP2-201ENST00000258607 PFKFB2O60825 505 aa10.55□□□□□ -0.72
CKAP2-201ENST00000258607 ECM2O94769 699 aaPredicted RBP10.55□□□□□ -0.72
CKAP2-201ENST00000258607 ZFYP08048 801 aaPredicted RBP10.55□□□□□ -0.72
CKAP2-201ENST00000258607 ZNF445P59923 1031 aa10.55□□□□□ -0.72
CKAP2-201ENST00000258607 PPARAQ07869 468 aa10.55□□□□□ -0.72
CKAP2-201ENST00000258607 CSPP1Q1MSJ5 1256 aa10.55□□□□□ -0.72
CKAP2-201ENST00000258607 SMARCC1Q92922 1105 aaPredicted RBP10.55□□□□□ -0.72
CKAP2-201ENST00000258607 BCL2L12Q9HB09 334 aa10.55□□□□□ -0.72
CKAP2-201ENST00000258607 RESTQ13127 1097 aa10.55□□□□□ -0.72
CKAP2-201ENST00000258607 KIAA0825Q8IV33 1275 aa10.55□□□□□ -0.72
CKAP2-201ENST00000258607 PDGFDQ9GZP0 370 aaPredicted RBP10.55□□□□□ -0.72
CKAP2-201ENST00000258607 CBX8Q9HC52 389 aa10.55□□□□□ -0.72
CKAP2-201ENST00000258607 KCNQ5Q9NR82 932 aa10.55□□□□□ -0.72
CKAP2-201ENST00000258607 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.55□□□□□ -0.72
CKAP2-201ENST00000258607 CFAP45Q9UL16 551 aa10.55□□□□□ -0.72
CKAP2-201ENST00000258607 V9GYY5 206 aaPredicted RBP10.55□□□□□ -0.72
CKAP2-201ENST00000258607 HMGB1P09429 215 aaKnown RBP10.54□□□□□ -0.72
CKAP2-201ENST00000258607 SSRP1Q08945 709 aaKnown RBP10.54□□□□□ -0.72
CKAP2-201ENST00000258607 IKQ13123 557 aaPredicted RBP10.54□□□□□ -0.72
CKAP2-201ENST00000258607 AKNAD1Q5T1N1 836 aa10.54□□□□□ -0.72
CKAP2-201ENST00000258607 USP49Q70CQ1 688 aa10.54□□□□□ -0.72
CKAP2-201ENST00000258607 ZSCAN30Q86W11 494 aa10.54□□□□□ -0.72
CKAP2-201ENST00000258607 DIS3L2Q8IYB7 885 aaKnown RBP10.54□□□□□ -0.72
CKAP2-201ENST00000258607 GJD4Q96KN9 370 aaPredicted RBP10.54□□□□□ -0.72
CKAP2-201ENST00000258607 PCDHAC2Q9Y5I4 1007 aa10.54□□□□□ -0.72
CKAP2-201ENST00000258607 MROH5Q6ZUA9 1318 aa10.54□□□□□ -0.72
CKAP2-201ENST00000258607 PNOCQ13519 176 aa10.54□□□□□ -0.72
CKAP2-201ENST00000258607 TRIM22Q8IYM9 498 aa10.54□□□□□ -0.72
CKAP2-201ENST00000258607 SMYD4Q8IYR2 804 aaPredicted RBP10.54□□□□□ -0.72
CKAP2-201ENST00000258607 UBA5Q9GZZ9 404 aa10.54□□□□□ -0.72
CKAP2-201ENST00000258607 HPS5Q9UPZ3 1129 aa10.54□□□□□ -0.72
CKAP2-201ENST00000258607 ZNF804BA4D1E1 1349 aa10.54□□□□□ -0.72
CKAP2-201ENST00000258607 TRPM3Q9HCF6 1732 aaPredicted RBP10.54□□□□□ -0.72
CKAP2-201ENST00000258607 PATL2C9JE40 543 aaKnown RBP10.54□□□□□ -0.72
CKAP2-201ENST00000258607 SPTLC2O15270 562 aa10.54□□□□□ -0.72
CKAP2-201ENST00000258607 SAFBQ15424 915 aaKnown RBP eCLIP10.54□□□□□ -0.72
CKAP2-201ENST00000258607 PARP10Q53GL7 1025 aa10.54□□□□□ -0.72
CKAP2-201ENST00000258607 MB21D2Q8IYB1 491 aaPredicted RBP10.54□□□□□ -0.72
CKAP2-201ENST00000258607 VGLL2Q8N8G2 317 aa10.54□□□□□ -0.72
CKAP2-201ENST00000258607 CPLX3Q8WVH0 158 aa10.54□□□□□ -0.72
CKAP2-201ENST00000258607 TNS2Q63HR2 1409 aa10.54□□□□□ -0.72
CKAP2-201ENST00000258607 MCM7P33993 719 aa10.53□□□□□ -0.72
CKAP2-201ENST00000258607 SNAP25P60880 206 aa10.53□□□□□ -0.72
CKAP2-201ENST00000258607 EXOSC10Q01780 885 aaKnown RBP10.53□□□□□ -0.72
CKAP2-201ENST00000258607 MFSD14BQ5SR56 506 aa10.53□□□□□ -0.72
CKAP2-201ENST00000258607 NOL10Q9BSC4 688 aaKnown RBP10.53□□□□□ -0.72
CKAP2-201ENST00000258607 DCCP43146 1447 aa10.53□□□□□ -0.72
CKAP2-201ENST00000258607 RIC1Q4ADV7 1423 aa10.53□□□□□ -0.72
CKAP2-201ENST00000258607 SERPINB2P05120 415 aa10.53□□□□□ -0.72
CKAP2-201ENST00000258607 TAL1P17542 331 aaPredicted RBP10.53□□□□□ -0.72
CKAP2-201ENST00000258607 TFAP4Q01664 338 aa10.53□□□□□ -0.72
CKAP2-201ENST00000258607 ZYXQ15942 572 aaKnown RBP10.53□□□□□ -0.72
CKAP2-201ENST00000258607 SH3RF3Q8TEJ3 882 aaPredicted RBP10.53□□□□□ -0.72
CKAP2-201ENST00000258607 KDM3BQ7LBC6 1761 aa10.53□□□□□ -0.72
CKAP2-201ENST00000258607 LDHBP07195 334 aaKnown RBP10.52□□□□□ -0.72
CKAP2-201ENST00000258607 HMGN5P82970 282 aaKnown RBP10.52□□□□□ -0.72
CKAP2-201ENST00000258607 TRIM28Q13263 835 aaKnown RBP10.52□□□□□ -0.72
CKAP2-201ENST00000258607 RBM26Q5T8P6 1007 aaKnown RBP10.52□□□□□ -0.72
CKAP2-201ENST00000258607 ZNF654Q8IZM8 581 aa10.52□□□□□ -0.72
CKAP2-201ENST00000258607 DHX58Q96C10 678 aa10.52□□□□□ -0.72
CKAP2-201ENST00000258607 ZNF396Q96N95 335 aaPredicted RBP10.52□□□□□ -0.72
CKAP2-201ENST00000258607 FRMPD2Q68DX3 1309 aaPredicted RBP10.52□□□□□ -0.72
CKAP2-201ENST00000258607 LRRC37A3O60309 1634 aa10.52□□□□□ -0.72
CKAP2-201ENST00000258607 ERVV-1B6SEH8 477 aa10.52□□□□□ -0.73
CKAP2-201ENST00000258607 CHRNA5P30532 468 aa10.52□□□□□ -0.73
CKAP2-201ENST00000258607 DPCR1Q3MIW9 517 aa10.52□□□□□ -0.73
CKAP2-201ENST00000258607 MYSM1Q5VVJ2 828 aa10.52□□□□□ -0.73
CKAP2-201ENST00000258607 HEATR3Q7Z4Q2 680 aa10.52□□□□□ -0.73
CKAP2-201ENST00000258607 IQCA1Q86XH1 822 aa10.52□□□□□ -0.73
CKAP2-201ENST00000258607 LRRC47Q8N1G4 583 aaKnown RBP10.52□□□□□ -0.73
CKAP2-201ENST00000258607 POLD4Q9HCU8 107 aa10.52□□□□□ -0.73
CKAP2-201ENST00000258607 CACNA1FO60840 1977 aa10.51□□□□□ -0.73
CKAP2-201ENST00000258607 NLRP5P59047 1200 aa10.51□□□□□ -0.73
CKAP2-201ENST00000258607 PIK3AP1Q6ZUJ8 805 aa10.51□□□□□ -0.73
CKAP2-201ENST00000258607 ILDR1Q86SU0 546 aaPredicted RBP10.51□□□□□ -0.73
CKAP2-201ENST00000258607 FBXO18Q8NFZ0 1043 aa10.51□□□□□ -0.73
CKAP2-201ENST00000258607 PYCARDQ9ULZ3 195 aa10.51□□□□□ -0.73
CKAP2-201ENST00000258607 PCDHB6Q9Y5E3 794 aa10.51□□□□□ -0.73
CKAP2-201ENST00000258607 LMO7Q8WWI1 1683 aa10.51□□□□□ -0.73
CKAP2-201ENST00000258607 VWA3AA6NCI4 1184 aa10.51□□□□□ -0.73
CKAP2-201ENST00000258607 CDK11BP21127 795 aaKnown RBP10.51□□□□□ -0.73
CKAP2-201ENST00000258607 SHROOM1Q2M3G4 852 aaPredicted RBP10.51□□□□□ -0.73
CKAP2-201ENST00000258607 GJA10Q969M2 543 aa10.51□□□□□ -0.73
CKAP2-201ENST00000258607 BLZF1Q9H2G9 400 aa10.51□□□□□ -0.73
CKAP2-201ENST00000258607 ALS2Q96Q42 1657 aa10.51□□□□□ -0.73
CKAP2-201ENST00000258607 ADAMTS3O15072 1205 aa10.51□□□□□ -0.73
CKAP2-201ENST00000258607 WDHD1O75717 1129 aaPredicted RBP10.51□□□□□ -0.73
CKAP2-201ENST00000258607 TSPY3P0CV98 308 aa10.51□□□□□ -0.73
CKAP2-201ENST00000258607 TSPY8P0CW00 308 aa10.51□□□□□ -0.73
CKAP2-201ENST00000258607 PLCD1P51178 756 aa10.51□□□□□ -0.73
CKAP2-201ENST00000258607 STAG2Q8N3U4 1231 aa10.51□□□□□ -0.73
CKAP2-201ENST00000258607 ESR2Q92731 530 aa10.51□□□□□ -0.73
CKAP2-201ENST00000258607 LY9Q9HBG7 655 aa10.51□□□□□ -0.73
CKAP2-201ENST00000258607 GPCPD1Q9NPB8 672 aa10.51□□□□□ -0.73
CKAP2-201ENST00000258607 GPR108Q9NPR9 543 aa10.51□□□□□ -0.73
CKAP2-201ENST00000258607 CLIP2Q9UDT6 1046 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms