RNA–Protein interactions for RNA: ENSMUST00000173369.1

Trim39-205, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

TSL 1 (best) BASIC

Gene Trim39, Length 2,914 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-205ENSMUST00000173369 NapbP28663 298 aa9.93□□□□□ -0.82
Trim39-205ENSMUST00000173369 Klhdc9Q3USL1 350 aa9.93□□□□□ -0.82
Trim39-205ENSMUST00000173369 Ddx11Q6AXC6 880 aa9.93□□□□□ -0.82
Trim39-205ENSMUST00000173369 Tbc1d23Q8K0F1 684 aa9.93□□□□□ -0.82
Trim39-205ENSMUST00000173369 Sil1Q9EPK6 465 aa9.93□□□□□ -0.82
Trim39-205ENSMUST00000173369 Rbbp6P97868 1790 aaKnown RBP9.93□□□□□ -0.82
Trim39-205ENSMUST00000173369 Plekhg2Q6KAU7 1340 aa9.93□□□□□ -0.82
Trim39-205ENSMUST00000173369 Ugt1a5B2RT14 529 aa9.93□□□□□ -0.82
Trim39-205ENSMUST00000173369 Nova2D3YVV7 556 aaKnown RBP9.93□□□□□ -0.82
Trim39-205ENSMUST00000173369 Slc4a9E9PUP3 929 aa9.93□□□□□ -0.82
Trim39-205ENSMUST00000173369 Sparcl1P70663 650 aa9.93□□□□□ -0.82
Trim39-205ENSMUST00000173369 Lgr6Q3UVD5 967 aa9.93□□□□□ -0.82
Trim39-205ENSMUST00000173369 Ankrd13cQ3UX43 541 aa9.93□□□□□ -0.82
Trim39-205ENSMUST00000173369 Tll1Q62381 1013 aa9.93□□□□□ -0.82
Trim39-205ENSMUST00000173369 Top1mtQ8R4U6 593 aa9.93□□□□□ -0.82
Trim39-205ENSMUST00000173369 CenppQ9CZ92 286 aa9.93□□□□□ -0.82
Trim39-205ENSMUST00000173369 Lonrf3Q9D4H7 753 aa9.93□□□□□ -0.82
Trim39-205ENSMUST00000173369 SisF8VQM5 1818 aa9.92□□□□□ -0.82
Trim39-205ENSMUST00000173369 Fgl2P12804 432 aa9.92□□□□□ -0.82
Trim39-205ENSMUST00000173369 Usp53P15975 1069 aa9.92□□□□□ -0.82
Trim39-205ENSMUST00000173369 Eef2P58252 858 aaKnown RBP9.92□□□□□ -0.82
Trim39-205ENSMUST00000173369 Gprin1Q3UNH4 932 aa9.92□□□□□ -0.82
Trim39-205ENSMUST00000173369 Gja3Q64448 417 aa9.92□□□□□ -0.82
Trim39-205ENSMUST00000173369 Kank4Q6P9J5 1016 aa9.92□□□□□ -0.82
Trim39-205ENSMUST00000173369 RubcnQ80U62 956 aa9.92□□□□□ -0.82
Trim39-205ENSMUST00000173369 Rasgrp4Q8BTM9 673 aa9.92□□□□□ -0.82
Trim39-205ENSMUST00000173369 Calhm4Q8CE93 315 aa9.92□□□□□ -0.82
Trim39-205ENSMUST00000173369 MlphQ91V27 590 aa9.92□□□□□ -0.82
Trim39-205ENSMUST00000173369 Ppp4r3bQ922R5 820 aa9.92□□□□□ -0.82
Trim39-205ENSMUST00000173369 Prg3Q9JL95 222 aa9.92□□□□□ -0.82
Trim39-205ENSMUST00000173369 Ecm29Q6PDI5 1840 aa9.92□□□□□ -0.82
Trim39-205ENSMUST00000173369 Ccdc183A2AJB1 534 aa9.92□□□□□ -0.82
Trim39-205ENSMUST00000173369 Pagr1bF6V0H0 108 aa9.92□□□□□ -0.82
Trim39-205ENSMUST00000173369 Nucb1Q02819 459 aaKnown RBP9.92□□□□□ -0.82
Trim39-205ENSMUST00000173369 Llgl2Q3TJ91 1027 aa9.92□□□□□ -0.82
Trim39-205ENSMUST00000173369 Bms1Q6PGF5 1284 aaKnown RBP9.92□□□□□ -0.82
Trim39-205ENSMUST00000173369 Pagr1aQ99L02 253 aa9.92□□□□□ -0.82
Trim39-205ENSMUST00000173369 Fam122aQ9DB52 284 aa9.92□□□□□ -0.82
Trim39-205ENSMUST00000173369 Col20a1Q923P0 1320 aa9.92□□□□□ -0.82
Trim39-205ENSMUST00000173369 Arfgef1G3X9K3 1846 aaKnown RBP9.92□□□□□ -0.82
Trim39-205ENSMUST00000173369 Ces1aE9PYP1 563 aa9.91□□□□□ -0.82
Trim39-205ENSMUST00000173369 DaxxO35613 739 aa9.91□□□□□ -0.82
Trim39-205ENSMUST00000173369 DnttP09838 530 aa9.91□□□□□ -0.82
Trim39-205ENSMUST00000173369 Ppfia3P60469 1194 aa9.91□□□□□ -0.82
Trim39-205ENSMUST00000173369 Prpf38aQ4FK66 312 aaKnown RBP9.91□□□□□ -0.82
Trim39-205ENSMUST00000173369 Tbc1d9bQ5SVR0 1263 aa9.91□□□□□ -0.82
Trim39-205ENSMUST00000173369 DaglaQ6WQJ1 1044 aa9.91□□□□□ -0.82
Trim39-205ENSMUST00000173369 Trpv1Q704Y3 839 aa9.91□□□□□ -0.82
Trim39-205ENSMUST00000173369 Ttc12Q8BW49 704 aa9.91□□□□□ -0.82
Trim39-205ENSMUST00000173369 StrbpQ91WM1 672 aaKnown RBP9.91□□□□□ -0.82
Trim39-205ENSMUST00000173369 Bmp2kQ91Z96 1138 aa9.91□□□□□ -0.82
Trim39-205ENSMUST00000173369 Eaf2Q91ZD6 262 aa9.91□□□□□ -0.82
Trim39-205ENSMUST00000173369 Tgm5Q9D7I9 724 aa9.91□□□□□ -0.82
Trim39-205ENSMUST00000173369 Tfip11Q9ERA6 838 aaKnown RBP9.91□□□□□ -0.82
Trim39-205ENSMUST00000173369 Pmfbp1Q9WVQ0 1022 aa9.91□□□□□ -0.82
Trim39-205ENSMUST00000173369 B3galt4Q9Z0F0 371 aa9.91□□□□□ -0.82
Trim39-205ENSMUST00000173369 Dnajc2P54103 621 aaKnown RBP9.91□□□□□ -0.82
Trim39-205ENSMUST00000173369 Myl10Q62082 202 aa9.91□□□□□ -0.82
Trim39-205ENSMUST00000173369 Nup133Q8R0G9 1155 aa9.91□□□□□ -0.82
Trim39-205ENSMUST00000173369 Xrcc4Q924T3 326 aa9.91□□□□□ -0.82
Trim39-205ENSMUST00000173369 Add2Q9QYB8 725 aa9.91□□□□□ -0.82
Trim39-205ENSMUST00000173369 Phrf1A6H619 1682 aa9.91□□□□□ -0.82
Trim39-205ENSMUST00000173369 Col1a1P11087 1453 aa9.91□□□□□ -0.82
Trim39-205ENSMUST00000173369 Rbm8a2A0A0N4SUH6 174 aa9.9□□□□□ -0.82
Trim39-205ENSMUST00000173369 Npr3P70180 536 aa9.9□□□□□ -0.82
Trim39-205ENSMUST00000173369 Ehmt1Q5DW34 1296 aa9.9□□□□□ -0.82
Trim39-205ENSMUST00000173369 Secisbp2lQ6A098 1086 aaKnown RBP9.9□□□□□ -0.82
Trim39-205ENSMUST00000173369 Ube2oQ6ZPJ3 1288 aa9.9□□□□□ -0.82
Trim39-205ENSMUST00000173369 Trmt2aQ8BNV1 574 aaKnown RBP9.9□□□□□ -0.82
Trim39-205ENSMUST00000173369 Nek11Q8C0Q4 628 aa9.9□□□□□ -0.82
Trim39-205ENSMUST00000173369 Rbm8aQ9CWZ3 174 aa9.9□□□□□ -0.82
Trim39-205ENSMUST00000173369 Fzd9Q9R216 592 aa9.9□□□□□ -0.82
Trim39-205ENSMUST00000173369 Frmd7A2AD83 703 aa9.9□□□□□ -0.82
Trim39-205ENSMUST00000173369 Dennd3A2RT67 1274 aa9.9□□□□□ -0.82
Trim39-205ENSMUST00000173369 Nmt2O70311 529 aa9.9□□□□□ -0.82
Trim39-205ENSMUST00000173369 Sh3bp1P55194 680 aa9.9□□□□□ -0.82
Trim39-205ENSMUST00000173369 Traf5P70191 558 aa9.9□□□□□ -0.82
Trim39-205ENSMUST00000173369 VrtnQ3SYK4 740 aa9.9□□□□□ -0.82
Trim39-205ENSMUST00000173369 Lins1Q3U1D0 764 aa9.9□□□□□ -0.82
Trim39-205ENSMUST00000173369 Slc10a4Q3UEZ8 437 aa9.9□□□□□ -0.82
Trim39-205ENSMUST00000173369 Prr7Q3V0I2 269 aa9.9□□□□□ -0.82
Trim39-205ENSMUST00000173369 Prdm1Q60636 856 aa9.9□□□□□ -0.82
Trim39-205ENSMUST00000173369 Il17raQ60943 864 aa9.9□□□□□ -0.82
Trim39-205ENSMUST00000173369 Ctr9Q62018 1173 aaKnown RBP9.9□□□□□ -0.82
Trim39-205ENSMUST00000173369 Ifit2Q64112 472 aa9.9□□□□□ -0.82
Trim39-205ENSMUST00000173369 Shisa4Q8CA71 197 aa9.9□□□□□ -0.82
Trim39-205ENSMUST00000173369 Celf2Q9Z0H4 508 aaKnown RBP9.9□□□□□ -0.82
Trim39-205ENSMUST00000173369 Myl3P09542 204 aa9.89□□□□□ -0.83
Trim39-205ENSMUST00000173369 Tnnt2P50752 301 aa9.89□□□□□ -0.83
Trim39-205ENSMUST00000173369 Fam178bQ24JP3 464 aa9.89□□□□□ -0.83
Trim39-205ENSMUST00000173369 Ppp1r11Q8K1L5 131 aa9.89□□□□□ -0.83
Trim39-205ENSMUST00000173369 Tomm22Q9CPQ3 142 aa9.89□□□□□ -0.83
Trim39-205ENSMUST00000173369 Zbed3Q9D0L1 228 aa9.89□□□□□ -0.83
Trim39-205ENSMUST00000173369 UncxO08934 530 aa9.89□□□□□ -0.83
Trim39-205ENSMUST00000173369 Rc3h1Q4VGL6 1130 aaKnown RBP9.89□□□□□ -0.83
Trim39-205ENSMUST00000173369 Senp6Q6P7W0 1132 aa9.89□□□□□ -0.83
Trim39-205ENSMUST00000173369 Glrx3Q9CQM9 337 aa9.89□□□□□ -0.83
Trim39-205ENSMUST00000173369 Mei1Q9D4I2 1268 aa9.89□□□□□ -0.83
Trim39-205ENSMUST00000173369 Ak2Q9WTP6 239 aa9.89□□□□□ -0.83
Trim39-205ENSMUST00000173369 Aox4Q3TYQ9 1336 aa9.89□□□□□ -0.83
Retrieved 100 of 22,080 RNA–protein pairs in 15.3 ms