RNA–Protein interactions for RNA: YPL234C

VMA11, Transcript of Vacuolar ATPase V0 domain subunit c', yeast

Gene VMA11, Length 495 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA11	YPL234C	TSC11	P40061	1430 aa		12.44	□□□□□ -0.42
VMA11	YPL234C	GEA1	P47102	1408 aa	Predicted RBP	12.44	□□□□□ -0.42
VMA11	YPL234C	DNF1	P32660	1571 aa		12.43	□□□□□ -0.42
VMA11	YPL234C	PAN1	P32521	1480 aa		12.43	□□□□□ -0.42
VMA11	YPL234C	NTE1	Q04958	1679 aa		12.42	□□□□□ -0.42
VMA11	YPL234C	IFH1	P39520	1085 aa		12.39	□□□□□ -0.43
VMA11	YPL234C	RPO21	P04050	1733 aa	Known RBP	12.37	□□□□□ -0.43
VMA11	YPL234C	RPA190	P10964	1664 aa	Known RBP	12.37	□□□□□ -0.43
VMA11	YPL234C	YBT1	P32386	1661 aa		12.37	□□□□□ -0.43
VMA11	YPL234C	MET5	P47169	1442 aa		12.35	□□□□□ -0.43
VMA11	YPL234C	TY3B-G	Q99315	1547 aa		12.32	□□□□□ -0.44
VMA11	YPL234C	SNT2	P53127	1403 aa		12.32	□□□□□ -0.44
VMA11	YPL234C	SSM4	P40318	1319 aa		12.29	□□□□□ -0.44
VMA11	YPL234C	MIF2	P35201	549 aa		12.28	□□□□□ -0.44
VMA11	YPL234C	IRC20	Q06554	1556 aa		12.27	□□□□□ -0.44
VMA11	YPL234C	LTE1	P07866	1435 aa		12.27	□□□□□ -0.45
VMA11	YPL234C	GEA2	P39993	1459 aa	Known RBP	12.27	□□□□□ -0.45
VMA11	YPL234C	RTT106	P40161	455 aa		12.19	□□□□□ -0.46
VMA11	YPL234C	CAT8	P39113	1433 aa		12.19	□□□□□ -0.46
VMA11	YPL234C	BNI1	P41832	1953 aa		12.18	□□□□□ -0.46
VMA11	YPL234C	VPS15	P22219	1454 aa		12.17	□□□□□ -0.46
VMA11	YPL234C	ITT1	Q04638	464 aa		12.16	□□□□□ -0.46
VMA11	YPL234C	NUP159	P40477	1460 aa		12.14	□□□□□ -0.47
VMA11	YPL234C	YRF1-1	P0CX20	1796 aa		12.11	□□□□□ -0.47
VMA11	YPL234C	YRF1-5	P0CX21	1796 aa		12.11	□□□□□ -0.47
VMA11	YPL234C	YRF1-8	P0CX22	1796 aa		12.11	□□□□□ -0.47
VMA11	YPL234C	ARO1	P08566	1588 aa	Known RBP	12.1	□□□□□ -0.47
VMA11	YPL234C	ABP1	P15891	592 aa	Known RBP	12.1	□□□□□ -0.47
VMA11	YPL234C	SPO14	P36126	1683 aa		12.1	□□□□□ -0.47
VMA11	YPL234C	PDR10	P51533	1564 aa		12.07	□□□□□ -0.48
VMA11	YPL234C	GCN2	P15442	1659 aa		12.06	□□□□□ -0.48
VMA11	YPL234C	GDB1	Q06625	1536 aa		12.06	□□□□□ -0.48
VMA11	YPL234C	PDR12	Q02785	1511 aa		12.06	□□□□□ -0.48
VMA11	YPL234C	SRB8	P25648	1427 aa		12.04	□□□□□ -0.48
VMA11	YPL234C	MMS1	Q06211	1407 aa		12.04	□□□□□ -0.48
VMA11	YPL234C	DRS2	P39524	1355 aa		11.99	□□□□□ -0.49
VMA11	YPL234C	BUD3	P25558	1636 aa		11.96	□□□□□ -0.5
VMA11	YPL234C	NUP157	P40064	1391 aa	Known RBP	11.95	□□□□□ -0.5
VMA11	YPL234C	MET10	P39692	1035 aa		11.94	□□□□□ -0.5
VMA11	YPL234C	CKB1	P43639	278 aa		11.92	□□□□□ -0.5
VMA11	YPL234C	YFR006W	P43590	535 aa		11.91	□□□□□ -0.5
VMA11	YPL234C	POL5	P39985	1022 aa	Known RBP	11.88	□□□□□ -0.51
VMA11	YPL234C	IQG1	Q12280	1495 aa		11.88	□□□□□ -0.51
VMA11	YPL234C	SEC7	P11075	2009 aa	Known RBP	11.87	□□□□□ -0.51
VMA11	YPL234C	YOR093C	Q12275	1648 aa		11.83	□□□□□ -0.52
VMA11	YPL234C	CHC1	P22137	1653 aa	Known RBP	11.82	□□□□□ -0.52
VMA11	YPL234C	BUD21	Q08492	214 aa	Predicted RBP	11.82	□□□□□ -0.52
VMA11	YPL234C	YSP2	Q06681	1438 aa		11.82	□□□□□ -0.52
VMA11	YPL234C	DNF2	Q12675	1612 aa		11.81	□□□□□ -0.52
VMA11	YPL234C	PDR5	P33302	1511 aa	Known RBP	11.8	□□□□□ -0.52
VMA11	YPL234C	NOP7	P53261	605 aa	Known RBP	11.77	□□□□□ -0.53
VMA11	YPL234C	DOP1	Q03921	1698 aa		11.77	□□□□□ -0.53
VMA11	YPL234C	BNR1	P40450	1375 aa		11.71	□□□□□ -0.53
VMA11	YPL234C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	11.71	□□□□□ -0.53	not detected
VMA11	YPL234C	PAF1	P38351	445 aa		11.7	□□□□□ -0.54
VMA11	YPL234C	SEC3	P33332	1336 aa	Known RBP	11.69	□□□□□ -0.54
VMA11	YPL234C	TRM3	Q07527	1436 aa		11.65	□□□□□ -0.54
VMA11	YPL234C	NUP188	P52593	1655 aa	Known RBP	11.65	□□□□□ -0.55
VMA11	YPL234C	ENP1	P38333	483 aa	Known RBP	11.64	□□□□□ -0.55
VMA11	YPL234C	VMR1	P38735	1592 aa		11.62	□□□□□ -0.55
VMA11	YPL234C	BFR2	Q06631	534 aa	Known RBP	11.61	□□□□□ -0.55
VMA11	YPL234C	SPT7	P35177	1332 aa		11.59	□□□□□ -0.55
VMA11	YPL234C	IML1	P47170	1584 aa		11.57	□□□□□ -0.56
VMA11	YPL234C	MHP1	P43638	1398 aa		11.56	□□□□□ -0.56
VMA11	YPL234C	RAV1	P47104	1357 aa		11.55	□□□□□ -0.56
VMA11	YPL234C	TY3B-I	Q7LHG5	1498 aa	Known RBP	11.54	□□□□□ -0.56
VMA11	YPL234C	NOP2	P40991	618 aa	Known RBP	11.52	□□□□□ -0.57
VMA11	YPL234C	RTC1	Q08281	1341 aa		11.5	□□□□□ -0.57
VMA11	YPL234C	PDR11	P40550	1411 aa		11.49	□□□□□ -0.57
VMA11	YPL234C	NUP192	P47054	1683 aa		11.49	□□□□□ -0.57
VMA11	YPL234C	MLP1	Q02455	1875 aa	Known RBP	11.48	□□□□□ -0.57
VMA11	YPL234C	ORC1	P54784	914 aa	Predicted RBP	11.47	□□□□□ -0.57
VMA11	YPL234C	TAF5	P38129	798 aa		11.41	□□□□□ -0.58
VMA11	YPL234C	YLR419W	Q06698	1435 aa	Known RBP	11.41	□□□□□ -0.58
VMA11	YPL234C	ESL2	P36168	1195 aa		11.4	□□□□□ -0.58
VMA11	YPL234C	LEU3	P08638	886 aa		11.39	□□□□□ -0.59
VMA11	YPL234C	PSD2	P53037	1138 aa	Known RBP	11.38	□□□□□ -0.59
VMA11	YPL234C	SCT1	P32784	759 aa		11.36	□□□□□ -0.59
VMA11	YPL234C	KIP3	P53086	805 aa	Known RBP	11.34	□□□□□ -0.59
VMA11	YPL234C	PDS5	Q04264	1277 aa		11.34	□□□□□ -0.59
VMA11	YPL234C	URN1	Q06525	465 aa	Known RBP	11.33	□□□□□ -0.6
VMA11	YPL234C	DNF3	Q12674	1656 aa		11.33	□□□□□ -0.6
VMA11	YPL234C	PRS1	P32895	427 aa	Known RBP	11.29	□□□□□ -0.6
VMA11	YPL234C	IPL1	P38991	367 aa		11.27	□□□□□ -0.61
VMA11	YPL234C	BCK1	Q01389	1478 aa		11.25	□□□□□ -0.61
VMA11	YPL234C	SPE2	P21182	396 aa		11.25	□□□□□ -0.61
VMA11	YPL234C	TYS1	P36421	394 aa	Known RBP	11.25	□□□□□ -0.61
VMA11	YPL234C	HAP1	P0CE41	1502 aa		11.23	□□□□□ -0.61
VMA11	YPL234C	YAP3	P38749	330 aa		11.22	□□□□□ -0.61
VMA11	YPL234C	SNF2	P22082	1703 aa		11.18	□□□□□ -0.62
VMA11	YPL234C	RAD9	P14737	1309 aa		11.18	□□□□□ -0.62
VMA11	YPL234C	NAP1	P25293	417 aa	Known RBP	11.18	□□□□□ -0.62
VMA11	YPL234C	ALD4	P46367	519 aa	Known RBP	11.18	□□□□□ -0.62
VMA11	YPL234C	TAF8	Q03750	510 aa		11.18	□□□□□ -0.62
VMA11	YPL234C	USO1	P25386	1790 aa		11.16	□□□□□ -0.62
VMA11	YPL234C	NST1	P53935	1240 aa		11.16	□□□□□ -0.62
VMA11	YPL234C	MAK10	Q02197	733 aa		11.15	□□□□□ -0.62
VMA11	YPL234C	RTG3	P38165	486 aa		11.11	□□□□□ -0.63
VMA11	YPL234C	CHZ1	P40019	153 aa	Predicted RBP	11.11	□□□□□ -0.63
VMA11	YPL234C	CAB1	Q04430	367 aa		11.11	□□□□□ -0.63

Retrieved 100 of 5,963 RNA–protein pairs in 12.7 ms