RNA–Protein interactions for RNA: YOR357C

SNX3, Transcript of Sorting nexin for late-Golgi enzymes, yeastyeast

Gene SNX3, Length 489 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SNX3YOR357C TY1B-NL1Q12112 1755 aa12.27□□□□□ -0.45
SNX3YOR357C TY1B-GR1Q12141 1755 aa12.27□□□□□ -0.45
SNX3YOR357C TY1B-BLQ12490 1755 aa12.27□□□□□ -0.45
SNX3YOR357C SNT2P53127 1403 aa12.26□□□□□ -0.45
SNX3YOR357C SSM4P40318 1319 aa12.23□□□□□ -0.45
SNX3YOR357C ESC1Q03661 1658 aaKnown RBP12.21□□□□□ -0.45
SNX3YOR357C TY3B-GQ99315 1547 aa12.18□□□□□ -0.46
SNX3YOR357C RPA190P10964 1664 aaKnown RBP12.15□□□□□ -0.46
SNX3YOR357C NTE1Q04958 1679 aa12.13□□□□□ -0.47
SNX3YOR357C GEA2P39993 1459 aaKnown RBP12.13□□□□□ -0.47
SNX3YOR357C YBT1P32386 1661 aa12.12□□□□□ -0.47
SNX3YOR357C RPO21P04050 1733 aaKnown RBP12.11□□□□□ -0.47
SNX3YOR357C DNF1P32660 1571 aa12.1□□□□□ -0.47
SNX3YOR357C IRC20Q06554 1556 aa12.1□□□□□ -0.47
SNX3YOR357C RTT106P40161 455 aa12.1□□□□□ -0.47
SNX3YOR357C CAT8P39113 1433 aa12.08□□□□□ -0.48
SNX3YOR357C VPS15P22219 1454 aa12.07□□□□□ -0.48
SNX3YOR357C NUP159P40477 1460 aa11.99□□□□□ -0.49
SNX3YOR357C SRB8P25648 1427 aa11.94□□□□□ -0.5
SNX3YOR357C PDR12Q02785 1511 aa11.93□□□□□ -0.5
SNX3YOR357C PDR10P51533 1564 aa11.92□□□□□ -0.5
SNX3YOR357C GDB1Q06625 1536 aa11.92□□□□□ -0.5
SNX3YOR357C ARO1P08566 1588 aaKnown RBP11.92□□□□□ -0.5
SNX3YOR357C MET10P39692 1035 aa11.91□□□□□ -0.5
SNX3YOR357C YRF1-1P0CX20 1796 aa11.89□□□□□ -0.51
SNX3YOR357C YRF1-5P0CX21 1796 aa11.89□□□□□ -0.51
SNX3YOR357C YRF1-8P0CX22 1796 aa11.89□□□□□ -0.51
SNX3YOR357C SPO14P36126 1683 aa11.88□□□□□ -0.51
SNX3YOR357C GCN2P15442 1659 aa11.85□□□□□ -0.51
SNX3YOR357C CKB1P43639 278 aa11.85□□□□□ -0.51
SNX3YOR357C MET5P47169 1442 aa11.85□□□□□ -0.51
SNX3YOR357C NUP157P40064 1391 aaKnown RBP11.84□□□□□ -0.51
SNX3YOR357C POL5P39985 1022 aaKnown RBP11.82□□□□□ -0.52
SNX3YOR357C MMS1Q06211 1407 aa11.78□□□□□ -0.52
SNX3YOR357C BUD21Q08492 214 aaPredicted RBP11.77□□□□□ -0.53
SNX3YOR357C BUD3P25558 1636 aa11.77□□□□□ -0.53
SNX3YOR357C YSP2Q06681 1438 aa11.77□□□□□ -0.53
SNX3YOR357C IQG1Q12280 1495 aa11.74□□□□□ -0.53
SNX3YOR357C NSR1P27476 414 aaKnown RBP RIP-Chip data11.7□□□□□ -0.54not detected
SNX3YOR357C NOP7P53261 605 aaKnown RBP11.68□□□□□ -0.54
SNX3YOR357C SEC7P11075 2009 aaKnown RBP11.67□□□□□ -0.54
SNX3YOR357C PDR5P33302 1511 aaKnown RBP11.65□□□□□ -0.54
SNX3YOR357C BNR1P40450 1375 aa11.62□□□□□ -0.55
SNX3YOR357C YOR093CQ12275 1648 aa11.61□□□□□ -0.55
SNX3YOR357C PAF1P38351 445 aa11.61□□□□□ -0.55
SNX3YOR357C SEC3P33332 1336 aaKnown RBP11.6□□□□□ -0.55
SNX3YOR357C ENP1P38333 483 aaKnown RBP11.59□□□□□ -0.55
SNX3YOR357C CHC1P22137 1653 aaKnown RBP11.58□□□□□ -0.56
SNX3YOR357C BFR2Q06631 534 aaKnown RBP11.55□□□□□ -0.56
SNX3YOR357C LTE1P07866 1435 aa11.53□□□□□ -0.56
SNX3YOR357C SPT7P35177 1332 aa11.52□□□□□ -0.57
SNX3YOR357C DOP1Q03921 1698 aa11.51□□□□□ -0.57
SNX3YOR357C TRM3Q07527 1436 aa11.5□□□□□ -0.57
SNX3YOR357C RAV1P47104 1357 aa11.47□□□□□ -0.57
SNX3YOR357C MHP1P43638 1398 aa11.46□□□□□ -0.57
SNX3YOR357C RTC1Q08281 1341 aa11.45□□□□□ -0.58
SNX3YOR357C NOP2P40991 618 aaKnown RBP11.45□□□□□ -0.58
SNX3YOR357C TY3B-IQ7LHG5 1498 aaKnown RBP11.44□□□□□ -0.58
SNX3YOR357C NUP188P52593 1655 aaKnown RBP11.44□□□□□ -0.58
SNX3YOR357C VMR1P38735 1592 aa11.44□□□□□ -0.58
SNX3YOR357C PDR11P40550 1411 aa11.43□□□□□ -0.58
SNX3YOR357C DRS2P39524 1355 aa11.41□□□□□ -0.58
SNX3YOR357C ORC1P54784 914 aaPredicted RBP11.4□□□□□ -0.58
SNX3YOR357C IML1P47170 1584 aa11.39□□□□□ -0.59
SNX3YOR357C ESL2P36168 1195 aa11.36□□□□□ -0.59
SNX3YOR357C TAF5P38129 798 aa11.35□□□□□ -0.59
SNX3YOR357C DNF2Q12675 1612 aa11.34□□□□□ -0.59
SNX3YOR357C PSD2P53037 1138 aaKnown RBP11.33□□□□□ -0.6
SNX3YOR357C NUP192P47054 1683 aa11.31□□□□□ -0.6
SNX3YOR357C YLR419WQ06698 1435 aaKnown RBP11.31□□□□□ -0.6
SNX3YOR357C LEU3P08638 886 aa11.29□□□□□ -0.6
SNX3YOR357C SCT1P32784 759 aa11.29□□□□□ -0.6
SNX3YOR357C PDS5Q04264 1277 aa11.29□□□□□ -0.6
SNX3YOR357C KIP3P53086 805 aaKnown RBP11.28□□□□□ -0.6
SNX3YOR357C BNI1P41832 1953 aa11.27□□□□□ -0.61
SNX3YOR357C PRS1P32895 427 aaKnown RBP11.27□□□□□ -0.61
SNX3YOR357C URN1Q06525 465 aaKnown RBP11.27□□□□□ -0.61
SNX3YOR357C IPL1P38991 367 aa11.25□□□□□ -0.61
SNX3YOR357C ITT1Q04638 464 aa11.24□□□□□ -0.61
SNX3YOR357C TYS1P36421 394 aaKnown RBP11.22□□□□□ -0.61
SNX3YOR357C SPE2P21182 396 aa11.19□□□□□ -0.62
SNX3YOR357C MLP1Q02455 1875 aaKnown RBP11.17□□□□□ -0.62
SNX3YOR357C ALD4P46367 519 aaKnown RBP11.15□□□□□ -0.62
SNX3YOR357C BCK1Q01389 1478 aa11.14□□□□□ -0.63
SNX3YOR357C YAP3P38749 330 aa11.13□□□□□ -0.63
SNX3YOR357C NST1P53935 1240 aa11.13□□□□□ -0.63
SNX3YOR357C TAF8Q03750 510 aa11.13□□□□□ -0.63
SNX3YOR357C HAP1P0CE41 1502 aa11.12□□□□□ -0.63
SNX3YOR357C RAD9P14737 1309 aa11.11□□□□□ -0.63
SNX3YOR357C NAP1P25293 417 aaKnown RBP11.09□□□□□ -0.63
SNX3YOR357C RTG3P38165 486 aa11.07□□□□□ -0.64
SNX3YOR357C CHZ1P40019 153 aaPredicted RBP11.07□□□□□ -0.64
SNX3YOR357C FKH1P40466 484 aa11.06□□□□□ -0.64
SNX3YOR357C CAB1Q04430 367 aa11.04□□□□□ -0.64
SNX3YOR357C RPP0P05317 312 aaKnown RBP11.03□□□□□ -0.64
SNX3YOR357C IOC4Q04213 475 aa11.03□□□□□ -0.64
SNX3YOR357C VPS27P40343 622 aaKnown RBP10.99□□□□□ -0.65
SNX3YOR357C CDC45Q08032 650 aa10.98□□□□□ -0.65
SNX3YOR357C DNF3Q12674 1656 aa10.98□□□□□ -0.65
SNX3YOR357C MRX12P47084 519 aa10.96□□□□□ -0.65
Retrieved 100 of 5,963 RNA–protein pairs in 8.4 ms