RNA–Protein interactions for RNA: YOR106W

VAM3, Transcript of Syntaxin-like vacuolar t-SNARE, yeastyeast

Gene VAM3, Length 852 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VAM3YOR106W IFH1P39520 1085 aa10.72□□□□□ -0.69
VAM3YOR106W YNL035CP53962 389 aaKnown RBP10.69□□□□□ -0.7
VAM3YOR106W RTG1P32607 177 aa10.68□□□□□ -0.7
VAM3YOR106W YEL023CP39992 682 aa10.68□□□□□ -0.7
VAM3YOR106W FKH1P40466 484 aa10.68□□□□□ -0.7
VAM3YOR106W JIP4Q03361 876 aa10.67□□□□□ -0.7
VAM3YOR106W PTC4P38089 393 aa10.63□□□□□ -0.71
VAM3YOR106W SEC61P32915 480 aa10.61□□□□□ -0.71
VAM3YOR106W AIR2Q12476 344 aaKnown RBP10.61□□□□□ -0.71
VAM3YOR106W YPR148CQ06523 435 aa10.6□□□□□ -0.71
VAM3YOR106W TFG1P41895 735 aaPredicted RBP10.59□□□□□ -0.71
VAM3YOR106W NCR1Q12200 1170 aa10.59□□□□□ -0.71
VAM3YOR106W DAN4P47179 1161 aa10.58□□□□□ -0.72
VAM3YOR106W YJL171CP46992 396 aa10.57□□□□□ -0.72
VAM3YOR106W VPS70P47161 811 aa10.57□□□□□ -0.72
VAM3YOR106W YGR273CP53329 174 aa10.57□□□□□ -0.72
VAM3YOR106W SOL3P38858 249 aa10.56□□□□□ -0.72
VAM3YOR106W NST1P53935 1240 aa10.53□□□□□ -0.72
VAM3YOR106W AI4P03878 556 aa10.51□□□□□ -0.73
VAM3YOR106W SAS10Q12136 610 aaPredicted RBP10.51□□□□□ -0.73
VAM3YOR106W MPH3P0CE00 602 aa10.5□□□□□ -0.73
VAM3YOR106W BMT6Q12291 365 aa10.48□□□□□ -0.73
VAM3YOR106W VHR2P40041 505 aa10.45□□□□□ -0.74
VAM3YOR106W YDL129WQ07555 291 aa10.45□□□□□ -0.74
VAM3YOR106W REF2P42073 533 aaPredicted RBP10.44□□□□□ -0.74
VAM3YOR106W CKB1P43639 278 aa10.44□□□□□ -0.74
VAM3YOR106W PML39Q03760 334 aa10.44□□□□□ -0.74
VAM3YOR106W KEX1P09620 729 aa10.42□□□□□ -0.74
VAM3YOR106W ILV3P39522 585 aaKnown RBP10.42□□□□□ -0.74
VAM3YOR106W SAP30P38429 201 aa10.41□□□□□ -0.74
VAM3YOR106W UBP14P38237 781 aaKnown RBP10.4□□□□□ -0.74
VAM3YOR106W YLR326WQ06170 240 aaKnown RBP10.4□□□□□ -0.74
VAM3YOR106W RAD54P32863 898 aa10.36□□□□□ -0.75
VAM3YOR106W KIC1P38692 1080 aa10.35□□□□□ -0.75
VAM3YOR106W MID1P41821 548 aa10.35□□□□□ -0.75
VAM3YOR106W PEX29Q03370 554 aa10.35□□□□□ -0.75
VAM3YOR106W SLI15P38283 698 aa10.32□□□□□ -0.76
VAM3YOR106W PCS60P38137 543 aaKnown RBP RIP-Chip data10.31□□□□□ -0.76not detected
VAM3YOR106W MAK21Q12176 1025 aaKnown RBP10.31□□□□□ -0.76
VAM3YOR106W YDR090CQ03193 310 aa10.3□□□□□ -0.76
VAM3YOR106W PBS2P08018 668 aa10.29□□□□□ -0.76
VAM3YOR106W COX6P00427 148 aa10.26□□□□□ -0.77
VAM3YOR106W SPB4P25808 606 aaPredicted RBP10.26□□□□□ -0.77
VAM3YOR106W MPC54Q08550 464 aa10.24□□□□□ -0.77
VAM3YOR106W RPP1BP10622 106 aaKnown RBP10.23□□□□□ -0.77
VAM3YOR106W ELP4Q02884 456 aaKnown RBP10.23□□□□□ -0.77
VAM3YOR106W DPL1Q05567 589 aa10.22□□□□□ -0.77
VAM3YOR106W PRE3P38624 215 aa10.21□□□□□ -0.77
VAM3YOR106W ARH1P48360 493 aa10.2□□□□□ -0.78
VAM3YOR106W CHL1P22516 861 aaPredicted RBP10.19□□□□□ -0.78
VAM3YOR106W DSF2P38213 736 aa10.19□□□□□ -0.78
VAM3YOR106W MAM3Q12296 706 aa10.19□□□□□ -0.78
VAM3YOR106W CDC73Q06697 393 aa10.18□□□□□ -0.78
VAM3YOR106W YDR344CQ05510 147 aa10.17□□□□□ -0.78
VAM3YOR106W HAP5Q02516 242 aa10.16□□□□□ -0.78
VAM3YOR106W NMA111P53920 997 aa10.15□□□□□ -0.78
VAM3YOR106W ISU2Q12056 156 aa10.11□□□□□ -0.79
VAM3YOR106W ORC6P38826 435 aa10.1□□□□□ -0.79
VAM3YOR106W IES2P40154 320 aa10.1□□□□□ -0.79
VAM3YOR106W SPT23P35210 1082 aa10.09□□□□□ -0.79
VAM3YOR106W PEX21P50091 288 aa10.09□□□□□ -0.79
VAM3YOR106W CSC1Q06538 782 aa10.08□□□□□ -0.8
VAM3YOR106W BNI4P53858 892 aa10.07□□□□□ -0.8
VAM3YOR106W TFB4Q12004 338 aa10.03□□□□□ -0.8
VAM3YOR106W GAP1P19145 602 aaPredicted RBP10.02□□□□□ -0.81
VAM3YOR106W PTC2P39966 464 aaKnown RBP10.02□□□□□ -0.81
VAM3YOR106W PSE1P32337 1089 aaKnown RBP10□□□□□ -0.81
VAM3YOR106W NUP42P49686 430 aaKnown RBP10□□□□□ -0.81
VAM3YOR106W BCK2P33306 851 aa9.99□□□□□ -0.81
VAM3YOR106W MVP1P40959 511 aaKnown RBP9.98□□□□□ -0.81
VAM3YOR106W TUM1Q08686 304 aaKnown RBP9.98□□□□□ -0.81
VAM3YOR106W YRR1Q12172 810 aa9.98□□□□□ -0.81
VAM3YOR106W RGR1P19263 1082 aa9.96□□□□□ -0.82
VAM3YOR106W DIT2P21595 489 aa9.95□□□□□ -0.82
VAM3YOR106W VRP1P37370 817 aa9.95□□□□□ -0.82
VAM3YOR106W YML082WQ04533 649 aaKnown RBP9.95□□□□□ -0.82
VAM3YOR106W LEU3P08638 886 aa9.94□□□□□ -0.82
VAM3YOR106W PDR1P12383 1068 aa9.93□□□□□ -0.82
VAM3YOR106W YPR109WQ06104 294 aa9.91□□□□□ -0.82
VAM3YOR106W CLB5P30283 435 aa9.89□□□□□ -0.83
VAM3YOR106W YNR021WP53723 404 aaKnown RBP9.89□□□□□ -0.83
VAM3YOR106W RAM1P22007 431 aa9.87□□□□□ -0.83
VAM3YOR106W NUD1P32336 851 aa9.86□□□□□ -0.83
VAM3YOR106W NPL4P33755 580 aa9.85□□□□□ -0.83
VAM3YOR106W YPR015CQ12531 247 aa9.85□□□□□ -0.83
VAM3YOR106W TEA1P47988 759 aa9.84□□□□□ -0.83
VAM3YOR106W ATF2P53296 535 aa9.84□□□□□ -0.83
VAM3YOR106W GLC3P32775 704 aa9.83□□□□□ -0.84
VAM3YOR106W XDJ1P39102 459 aa9.81□□□□□ -0.84
VAM3YOR106W STR2P47164 639 aa9.79□□□□□ -0.84
VAM3YOR106W GYP1Q08484 637 aa9.79□□□□□ -0.84
VAM3YOR106W ISM1P48526 1002 aa9.77□□□□□ -0.85
VAM3YOR106W RPN1P38764 993 aaKnown RBP9.75□□□□□ -0.85
VAM3YOR106W BUD20Q08004 166 aaPredicted RBP9.75□□□□□ -0.85
VAM3YOR106W AIM7Q12156 149 aa9.75□□□□□ -0.85
VAM3YOR106W PRT1P06103 763 aaKnown RBP9.74□□□□□ -0.85
VAM3YOR106W GCD11P32481 527 aaKnown RBP9.73□□□□□ -0.85
VAM3YOR106W SAS4Q04003 481 aa9.73□□□□□ -0.85
VAM3YOR106W NIS1P53939 407 aa9.71□□□□□ -0.86
VAM3YOR106W YMR196WQ04336 1088 aa9.71□□□□□ -0.86
Retrieved 100 of 5,963 RNA–protein pairs in 29.6 ms