RNA–Protein interactions for RNA: YMR173W

DDR48, Transcript of DNA damage-responsive protein, yeastyeast

Gene DDR48, Length 1,293 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DDR48YMR173W PTC4P38089 393 aa8.45□□□□□ -1.06
DDR48YMR173W YEL023CP39992 682 aa8.44□□□□□ -1.06
DDR48YMR173W CHL1P22516 861 aaPredicted RBP8.42□□□□□ -1.06
DDR48YMR173W BCK2P33306 851 aa8.4□□□□□ -1.06
DDR48YMR173W PRE3P38624 215 aa8.39□□□□□ -1.07
DDR48YMR173W GRE2Q12068 342 aaKnown RBP8.34□□□□□ -1.07
DDR48YMR173W MIF2P35201 549 aa8.29□□□□□ -1.08
DDR48YMR173W YDR344CQ05510 147 aa8.29□□□□□ -1.08
DDR48YMR173W MAK11P20484 414 aaKnown RBP8.28□□□□□ -1.08
DDR48YMR173W PML39Q03760 334 aa8.28□□□□□ -1.08
DDR48YMR173W RAM2P29703 316 aa8.27□□□□□ -1.09
DDR48YMR173W EDS1P38073 919 aa8.27□□□□□ -1.09
DDR48YMR173W GUT1P32190 709 aa8.25□□□□□ -1.09
DDR48YMR173W PTC3P34221 468 aaKnown RBP8.25□□□□□ -1.09
DDR48YMR173W ATH1P48016 1211 aa8.25□□□□□ -1.09
DDR48YMR173W NST1P53935 1240 aa8.22□□□□□ -1.09
DDR48YMR173W VRP1P37370 817 aa8.21□□□□□ -1.1
DDR48YMR173W ELP4Q02884 456 aaKnown RBP8.21□□□□□ -1.1
DDR48YMR173W XDJ1P39102 459 aa8.2□□□□□ -1.1
DDR48YMR173W MID1P41821 548 aa8.17□□□□□ -1.1
DDR48YMR173W COQ8P27697 501 aa8.16□□□□□ -1.1
DDR48YMR173W SOL3P38858 249 aa8.16□□□□□ -1.1
DDR48YMR173W ARH1P48360 493 aa8.16□□□□□ -1.1
DDR48YMR173W AI4P03878 556 aa8.11□□□□□ -1.11
DDR48YMR173W MPH3P0CE00 602 aa8.11□□□□□ -1.11
DDR48YMR173W ILV3P39522 585 aaKnown RBP8.08□□□□□ -1.12
DDR48YMR173W SPT23P35210 1082 aa8.06□□□□□ -1.12
DDR48YMR173W PEX29Q03370 554 aa8.06□□□□□ -1.12
DDR48YMR173W DPS1P04802 557 aaKnown RBP8.04□□□□□ -1.12
DDR48YMR173W HAP5Q02516 242 aa8.02□□□□□ -1.13
DDR48YMR173W NOP53Q12080 455 aaKnown RBP8.02□□□□□ -1.13
DDR48YMR173W YGR273CP53329 174 aa8.01□□□□□ -1.13
DDR48YMR173W BNI4P53858 892 aa7.99□□□□□ -1.13
DDR48YMR173W MPC54Q08550 464 aa7.97□□□□□ -1.13
DDR48YMR173W YML082WQ04533 649 aaKnown RBP7.95□□□□□ -1.14
DDR48YMR173W PTC2P39966 464 aaKnown RBP7.94□□□□□ -1.14
DDR48YMR173W SLI15P38283 698 aa7.92□□□□□ -1.14
DDR48YMR173W NMA111P53920 997 aa7.92□□□□□ -1.14
DDR48YMR173W SRC1Q03707 834 aa7.88□□□□□ -1.15
DDR48YMR173W DPL1Q05567 589 aa7.88□□□□□ -1.15
DDR48YMR173W KEX1P09620 729 aa7.82□□□□□ -1.16
DDR48YMR173W YPR015CQ12531 247 aa7.81□□□□□ -1.16
DDR48YMR173W RAM1P22007 431 aa7.78□□□□□ -1.16
DDR48YMR173W ISU2Q12056 156 aa7.78□□□□□ -1.16
DDR48YMR173W RAS1P01119 309 aa7.75□□□□□ -1.17
DDR48YMR173W CDC73Q06697 393 aa7.75□□□□□ -1.17
DDR48YMR173W YLR326WQ06170 240 aaKnown RBP7.74□□□□□ -1.17
DDR48YMR173W UBP14P38237 781 aaKnown RBP7.73□□□□□ -1.17
DDR48YMR173W SET1P38827 1080 aaKnown RBP7.73□□□□□ -1.17
DDR48YMR173W VHR2P40041 505 aa7.69□□□□□ -1.18
DDR48YMR173W PDR1P12383 1068 aa7.68□□□□□ -1.18
DDR48YMR173W PCS60P38137 543 aaKnown RBP RIP-Chip data7.68□□□□□ -1.18not detected
DDR48YMR173W GYP1Q08484 637 aa7.68□□□□□ -1.18
DDR48YMR173W AMS1P22855 1083 aa7.65□□□□□ -1.18
DDR48YMR173W RAD54P32863 898 aa7.64□□□□□ -1.19
DDR48YMR173W SDH2P21801 266 aa7.63□□□□□ -1.19
DDR48YMR173W SAS4Q04003 481 aa7.62□□□□□ -1.19
DDR48YMR173W RGA2Q06407 1009 aa7.62□□□□□ -1.19
DDR48YMR173W RGA1P39083 1007 aa7.61□□□□□ -1.19
DDR48YMR173W RPP1BP10622 106 aaKnown RBP7.59□□□□□ -1.19
DDR48YMR173W TRK1P12685 1235 aa7.58□□□□□ -1.2
DDR48YMR173W YDR090CQ03193 310 aa7.56□□□□□ -1.2
DDR48YMR173W BUD20Q08004 166 aaPredicted RBP7.53□□□□□ -1.2
DDR48YMR173W YEL077CQ3E7X8 1277 aa7.53□□□□□ -1.2
DDR48YMR173W YRR1Q12172 810 aa7.52□□□□□ -1.21
DDR48YMR173W GAP1P19145 602 aaPredicted RBP7.5□□□□□ -1.21
DDR48YMR173W KIC1P38692 1080 aa7.5□□□□□ -1.21
DDR48YMR173W IFH1P39520 1085 aa7.5□□□□□ -1.21
DDR48YMR173W PRT1P06103 763 aaKnown RBP7.49□□□□□ -1.21
DDR48YMR173W MRF1P30775 413 aaPredicted RBP7.49□□□□□ -1.21
DDR48YMR173W STR2P47164 639 aa7.48□□□□□ -1.21
DDR48YMR173W PEX21P50091 288 aa7.48□□□□□ -1.21
DDR48YMR173W CSC1Q06538 782 aa7.47□□□□□ -1.21
DDR48YMR173W ISM1P48526 1002 aa7.46□□□□□ -1.22
DDR48YMR173W TFB4Q12004 338 aa7.46□□□□□ -1.22
DDR48YMR173W REF2P42073 533 aaPredicted RBP7.44□□□□□ -1.22
DDR48YMR173W TUM1Q08686 304 aaKnown RBP7.44□□□□□ -1.22
DDR48YMR173W NUD1P32336 851 aa7.43□□□□□ -1.22
DDR48YMR173W YPR148CQ06523 435 aa7.42□□□□□ -1.22
DDR48YMR173W ERG12P07277 443 aa7.4□□□□□ -1.22
DDR48YMR173W ORC6P38826 435 aa7.4□□□□□ -1.22
DDR48YMR173W TY1A-DR4O74302 440 aa7.37□□□□□ -1.23
DDR48YMR173W TY1A-HP0C2I4 478 aaKnown RBP7.37□□□□□ -1.23
DDR48YMR173W TY1A-AP0CX57 440 aa7.37□□□□□ -1.23
DDR48YMR173W TY1A-PR1P0CX58 440 aa7.37□□□□□ -1.23
DDR48YMR173W TY1A-ORP0CX59 440 aa7.37□□□□□ -1.23
DDR48YMR173W TY1A-PR2P0CX60 440 aa7.37□□□□□ -1.23
DDR48YMR173W TY1A-DR5P0CX65 440 aa7.37□□□□□ -1.23
DDR48YMR173W TY1A-ER2P0CX66 440 aa7.37□□□□□ -1.23
DDR48YMR173W TY1A-GR3P0CX67 440 aa7.37□□□□□ -1.23
DDR48YMR173W TY1A-LR1P0CX68 440 aa7.37□□□□□ -1.23
DDR48YMR173W TY1A-MR2P0CX69 440 aa7.37□□□□□ -1.23
DDR48YMR173W NPL4P33755 580 aa7.37□□□□□ -1.23
DDR48YMR173W CST6P40535 587 aa7.37□□□□□ -1.23
DDR48YMR173W TY1A-JR2P47099 440 aa7.37□□□□□ -1.23
DDR48YMR173W TY1A-DR1Q03856 440 aa7.37□□□□□ -1.23
DDR48YMR173W TY1A-ML1Q04706 440 aaKnown RBP7.37□□□□□ -1.23
DDR48YMR173W TY1A-BRQ12217 440 aa7.37□□□□□ -1.23
DDR48YMR173W TY1A-NL2Q12470 440 aa7.37□□□□□ -1.23
DDR48YMR173W TY1A-GR2Q12485 440 aa7.37□□□□□ -1.23
Retrieved 100 of 5,963 RNA–protein pairs in 11.7 ms