RNA–Protein interactions for RNA: YKL173W

SNU114, Transcript of GTPase component of U5 snRNP involved in mRNA splicing via spliceosome, yeast

Gene SNU114, Length 3,027 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNU114	YKL173W	GRE2	Q12068	342 aa	Known RBP	4.54	□□□□□ -1.68
SNU114	YKL173W	LDB19	Q12502	818 aa		4.54	□□□□□ -1.68
SNU114	YKL173W	HTA1	P04911	132 aa	Known RBP	4.52	□□□□□ -1.69
SNU114	YKL173W	HTA2	P04912	132 aa		4.52	□□□□□ -1.69
SNU114	YKL173W	PTC4	P38089	393 aa		4.52	□□□□□ -1.69
SNU114	YKL173W	YEL023C	P39992	682 aa		4.51	□□□□□ -1.69
SNU114	YKL173W	JIP4	Q03361	876 aa		4.51	□□□□□ -1.69
SNU114	YKL173W	SEC61	P32915	480 aa		4.51	□□□□□ -1.69
SNU114	YKL173W	YNL035C	P53962	389 aa	Known RBP	4.51	□□□□□ -1.69
SNU114	YKL173W	YGR273C	P53329	174 aa		4.5	□□□□□ -1.69
SNU114	YKL173W	DCW1	P36091	449 aa		4.5	□□□□□ -1.69
SNU114	YKL173W	IFH1	P39520	1085 aa		4.5	□□□□□ -1.69
SNU114	YKL173W	ATH1	P48016	1211 aa		4.5	□□□□□ -1.69
SNU114	YKL173W	SIS1	P25294	352 aa	Known RBP	4.49	□□□□□ -1.69
SNU114	YKL173W	AI4	P03878	556 aa		4.49	□□□□□ -1.69
SNU114	YKL173W	MPH3	P0CE00	602 aa		4.48	□□□□□ -1.69
SNU114	YKL173W	UBP14	P38237	781 aa	Known RBP	4.48	□□□□□ -1.69
SNU114	YKL173W	ILV3	P39522	585 aa	Known RBP	4.48	□□□□□ -1.69
SNU114	YKL173W	RTG1	P32607	177 aa		4.48	□□□□□ -1.69
SNU114	YKL173W	TAF7	Q05021	590 aa		4.47	□□□□□ -1.69
SNU114	YKL173W	YDR090C	Q03193	310 aa		4.46	□□□□□ -1.7
SNU114	YKL173W	YLR326W	Q06170	240 aa	Known RBP	4.45	□□□□□ -1.7
SNU114	YKL173W	NCR1	Q12200	1170 aa		4.44	□□□□□ -1.7
SNU114	YKL173W	KEX1	P09620	729 aa		4.43	□□□□□ -1.7
SNU114	YKL173W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	4.41	□□□□□ -1.7	not detected
SNU114	YKL173W	YDL129W	Q07555	291 aa		4.4	□□□□□ -1.7
SNU114	YKL173W	SLI15	P38283	698 aa		4.4	□□□□□ -1.71
SNU114	YKL173W	VPS70	P47161	811 aa		4.4	□□□□□ -1.71
SNU114	YKL173W	REF2	P42073	533 aa	Predicted RBP	4.4	□□□□□ -1.71
SNU114	YKL173W	YDR344C	Q05510	147 aa		4.4	□□□□□ -1.71
SNU114	YKL173W	GAP1	P19145	602 aa	Predicted RBP	4.39	□□□□□ -1.71
SNU114	YKL173W	CKB1	P43639	278 aa		4.39	□□□□□ -1.71
SNU114	YKL173W	COX6	P00427	148 aa		4.39	□□□□□ -1.71
SNU114	YKL173W	PML39	Q03760	334 aa		4.39	□□□□□ -1.71
SNU114	YKL173W	MID1	P41821	548 aa		4.38	□□□□□ -1.71
SNU114	YKL173W	DSF2	P38213	736 aa		4.38	□□□□□ -1.71
SNU114	YKL173W	VHR2	P40041	505 aa		4.38	□□□□□ -1.71
SNU114	YKL173W	BMT6	Q12291	365 aa		4.38	□□□□□ -1.71
SNU114	YKL173W	MAK21	Q12176	1025 aa	Known RBP	4.36	□□□□□ -1.71
SNU114	YKL173W	ARH1	P48360	493 aa		4.35	□□□□□ -1.71
SNU114	YKL173W	MPC54	Q08550	464 aa		4.35	□□□□□ -1.71
SNU114	YKL173W	SAP30	P38429	201 aa		4.34	□□□□□ -1.71
SNU114	YKL173W	PBS2	P08018	668 aa		4.34	□□□□□ -1.72
SNU114	YKL173W	ORC6	P38826	435 aa		4.33	□□□□□ -1.72
SNU114	YKL173W	YJL171C	P46992	396 aa		4.33	□□□□□ -1.72
SNU114	YKL173W	RAD54	P32863	898 aa		4.32	□□□□□ -1.72
SNU114	YKL173W	PRE3	P38624	215 aa		4.32	□□□□□ -1.72
SNU114	YKL173W	TFG1	P41895	735 aa	Predicted RBP	4.32	□□□□□ -1.72
SNU114	YKL173W	NUP42	P49686	430 aa	Known RBP	4.32	□□□□□ -1.72
SNU114	YKL173W	DPL1	Q05567	589 aa		4.31	□□□□□ -1.72
SNU114	YKL173W	CHL1	P22516	861 aa	Predicted RBP	4.31	□□□□□ -1.72
SNU114	YKL173W	PEX29	Q03370	554 aa		4.31	□□□□□ -1.72
SNU114	YKL173W	CDC73	Q06697	393 aa		4.31	□□□□□ -1.72
SNU114	YKL173W	RAM1	P22007	431 aa		4.3	□□□□□ -1.72
SNU114	YKL173W	LEO1	P38439	464 aa		4.3	□□□□□ -1.72
SNU114	YKL173W	NMA111	P53920	997 aa		4.29	□□□□□ -1.72
SNU114	YKL173W	BNI4	P53858	892 aa		4.28	□□□□□ -1.72
SNU114	YKL173W	HAP5	Q02516	242 aa		4.28	□□□□□ -1.72
SNU114	YKL173W	RGR1	P19263	1082 aa		4.27	□□□□□ -1.73
SNU114	YKL173W	MVP1	P40959	511 aa	Known RBP	4.27	□□□□□ -1.73
SNU114	YKL173W	YML082W	Q04533	649 aa	Known RBP	4.27	□□□□□ -1.73
SNU114	YKL173W	ISU2	Q12056	156 aa		4.27	□□□□□ -1.73
SNU114	YKL173W	MAM3	Q12296	706 aa		4.26	□□□□□ -1.73
SNU114	YKL173W	LEU3	P08638	886 aa		4.25	□□□□□ -1.73
SNU114	YKL173W	PSE1	P32337	1089 aa	Known RBP	4.25	□□□□□ -1.73
SNU114	YKL173W	CSC1	Q06538	782 aa		4.25	□□□□□ -1.73
SNU114	YKL173W	YPR015C	Q12531	247 aa		4.25	□□□□□ -1.73
SNU114	YKL173W	SPT23	P35210	1082 aa		4.25	□□□□□ -1.73
SNU114	YKL173W	DIT2	P21595	489 aa		4.24	□□□□□ -1.73
SNU114	YKL173W	TFB4	Q12004	338 aa		4.24	□□□□□ -1.73
SNU114	YKL173W	KIC1	P38692	1080 aa		4.24	□□□□□ -1.73
SNU114	YKL173W	IES2	P40154	320 aa		4.23	□□□□□ -1.73
SNU114	YKL173W	PDR1	P12383	1068 aa		4.21	□□□□□ -1.74
SNU114	YKL173W	SPB4	P25808	606 aa	Predicted RBP	4.21	□□□□□ -1.74
SNU114	YKL173W	ELP4	Q02884	456 aa	Known RBP	4.21	□□□□□ -1.74
SNU114	YKL173W	BCK2	P33306	851 aa		4.19	□□□□□ -1.74
SNU114	YKL173W	YNR021W	P53723	404 aa	Known RBP	4.19	□□□□□ -1.74
SNU114	YKL173W	RPP1B	P10622	106 aa	Known RBP	4.19	□□□□□ -1.74
SNU114	YKL173W	STR2	P47164	639 aa		4.19	□□□□□ -1.74
SNU114	YKL173W	PTC2	P39966	464 aa	Known RBP	4.18	□□□□□ -1.74
SNU114	YKL173W	TUM1	Q08686	304 aa	Known RBP	4.18	□□□□□ -1.74
SNU114	YKL173W	SEC2	P17065	759 aa		4.18	□□□□□ -1.74
SNU114	YKL173W	SIT4	P20604	311 aa		4.17	□□□□□ -1.74
SNU114	YKL173W	VRP1	P37370	817 aa		4.17	□□□□□ -1.74
SNU114	YKL173W	XDJ1	P39102	459 aa		4.17	□□□□□ -1.74
SNU114	YKL173W	BUD20	Q08004	166 aa	Predicted RBP	4.17	□□□□□ -1.74
SNU114	YKL173W	YRR1	Q12172	810 aa		4.17	□□□□□ -1.74
SNU114	YKL173W	TY1A-DR4	O74302	440 aa		4.17	□□□□□ -1.74
SNU114	YKL173W	TY1A-H	P0C2I4	478 aa	Known RBP	4.17	□□□□□ -1.74
SNU114	YKL173W	TY1A-A	P0CX57	440 aa		4.17	□□□□□ -1.74
SNU114	YKL173W	TY1A-PR1	P0CX58	440 aa		4.17	□□□□□ -1.74
SNU114	YKL173W	TY1A-OR	P0CX59	440 aa		4.17	□□□□□ -1.74
SNU114	YKL173W	TY1A-PR2	P0CX60	440 aa		4.17	□□□□□ -1.74
SNU114	YKL173W	TY1A-DR5	P0CX65	440 aa		4.17	□□□□□ -1.74
SNU114	YKL173W	TY1A-ER2	P0CX66	440 aa		4.17	□□□□□ -1.74
SNU114	YKL173W	TY1A-GR3	P0CX67	440 aa		4.17	□□□□□ -1.74
SNU114	YKL173W	TY1A-LR1	P0CX68	440 aa		4.17	□□□□□ -1.74
SNU114	YKL173W	TY1A-MR2	P0CX69	440 aa		4.17	□□□□□ -1.74
SNU114	YKL173W	TY1A-JR2	P47099	440 aa		4.17	□□□□□ -1.74
SNU114	YKL173W	TY1A-DR1	Q03856	440 aa		4.17	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 12.7 ms