RNA–Protein interactions for RNA: YER029C

SMB1, Transcript of Core Sm protein Sm B, yeastyeast

Gene SMB1, Length 591 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SMB1YER029C YEL023CP39992 682 aa8.38□□□□□ -1.07
SMB1YER029C PTC4P38089 393 aa8.36□□□□□ -1.07
SMB1YER029C RCR1P38212 213 aa8.36□□□□□ -1.07
SMB1YER029C DPS1P04802 557 aaKnown RBP8.34□□□□□ -1.07
SMB1YER029C ABP1P15891 592 aaKnown RBP8.32□□□□□ -1.08
SMB1YER029C ARP8Q12386 881 aaKnown RBP RIP-Chip data8.32□□□□□ -1.08not detected
SMB1YER029C TFA1P36100 482 aa8.31□□□□□ -1.08
SMB1YER029C ELP4Q02884 456 aaKnown RBP8.3□□□□□ -1.08
SMB1YER029C RGA2Q06407 1009 aa8.3□□□□□ -1.08
SMB1YER029C SSP1P38871 571 aa8.27□□□□□ -1.09
SMB1YER029C PML39Q03760 334 aa8.27□□□□□ -1.09
SMB1YER029C MGA2P40578 1113 aa8.19□□□□□ -1.1
SMB1YER029C SRC1Q03707 834 aa8.15□□□□□ -1.1
SMB1YER029C MID1P41821 548 aa8.13□□□□□ -1.11
SMB1YER029C RGA1P39083 1007 aa8.1□□□□□ -1.11
SMB1YER029C ARH1P48360 493 aa8.1□□□□□ -1.11
SMB1YER029C GRE2Q12068 342 aaKnown RBP8.1□□□□□ -1.11
SMB1YER029C SPT23P35210 1082 aa8.01□□□□□ -1.13
SMB1YER029C PEX29Q03370 554 aa8.01□□□□□ -1.13
SMB1YER029C MIF2P35201 549 aa7.99□□□□□ -1.13
SMB1YER029C ATH1P48016 1211 aa7.99□□□□□ -1.13
SMB1YER029C GUT1P32190 709 aa7.94□□□□□ -1.14
SMB1YER029C NST1P53935 1240 aa7.93□□□□□ -1.14
SMB1YER029C HAP5Q02516 242 aa7.93□□□□□ -1.14
SMB1YER029C PTC3P34221 468 aaKnown RBP7.91□□□□□ -1.14
SMB1YER029C EDS1P38073 919 aa7.91□□□□□ -1.14
SMB1YER029C RAS1P01119 309 aa7.9□□□□□ -1.14
SMB1YER029C SOL3P38858 249 aa7.89□□□□□ -1.15
SMB1YER029C PTC2P39966 464 aaKnown RBP7.89□□□□□ -1.15
SMB1YER029C BNI4P53858 892 aa7.86□□□□□ -1.15
SMB1YER029C ILV3P39522 585 aaKnown RBP7.85□□□□□ -1.15
SMB1YER029C YML082WQ04533 649 aaKnown RBP7.85□□□□□ -1.15
SMB1YER029C MPH3P0CE00 602 aa7.83□□□□□ -1.16
SMB1YER029C AI4P03878 556 aa7.8□□□□□ -1.16
SMB1YER029C MPC54Q08550 464 aa7.8□□□□□ -1.16
SMB1YER029C MAK11P20484 414 aaKnown RBP7.78□□□□□ -1.16
SMB1YER029C NMA111P53920 997 aa7.76□□□□□ -1.17
SMB1YER029C RAM2P29703 316 aa7.74□□□□□ -1.17
SMB1YER029C YPR015CQ12531 247 aa7.73□□□□□ -1.17
SMB1YER029C COQ8P27697 501 aa7.72□□□□□ -1.17
SMB1YER029C TRK1P12685 1235 aa7.7□□□□□ -1.18
SMB1YER029C SLI15P38283 698 aa7.65□□□□□ -1.18
SMB1YER029C AMS1P22855 1083 aa7.64□□□□□ -1.19
SMB1YER029C YGR273CP53329 174 aa7.64□□□□□ -1.19
SMB1YER029C DPL1Q05567 589 aa7.63□□□□□ -1.19
SMB1YER029C GYP1Q08484 637 aa7.63□□□□□ -1.19
SMB1YER029C RAM1P22007 431 aa7.61□□□□□ -1.19
SMB1YER029C YPL062WQ02781 134 aa7.57□□□□□ -1.2
SMB1YER029C SDH2P21801 266 aa7.56□□□□□ -1.2
SMB1YER029C PDR1P12383 1068 aa7.52□□□□□ -1.21
SMB1YER029C ISU2Q12056 156 aa7.52□□□□□ -1.21
SMB1YER029C CDC73Q06697 393 aa7.49□□□□□ -1.21
SMB1YER029C GAR1P28007 205 aaKnown RBP7.45□□□□□ -1.22
SMB1YER029C YEL077CQ3E7X8 1277 aa7.43□□□□□ -1.22
SMB1YER029C KEX1P09620 729 aa7.42□□□□□ -1.22
SMB1YER029C SAS4Q04003 481 aa7.41□□□□□ -1.22
SMB1YER029C NOP53Q12080 455 aaKnown RBP7.41□□□□□ -1.22
SMB1YER029C GBP2P25555 427 aaKnown RBP RIP-Chip data7.4□□□□□ -1.22not detected
SMB1YER029C AIR1P40507 360 aaKnown RBP7.37□□□□□ -1.23
SMB1YER029C BRE2P43132 505 aa7.35□□□□□ -1.23
SMB1YER029C CLA4P48562 842 aa7.32□□□□□ -1.24
SMB1YER029C MRF1P30775 413 aaPredicted RBP7.31□□□□□ -1.24
SMB1YER029C BUD20Q08004 166 aaPredicted RBP7.29□□□□□ -1.24
SMB1YER029C GCR2Q01722 534 aa7.27□□□□□ -1.25
SMB1YER029C VHR2P40041 505 aa7.26□□□□□ -1.25
SMB1YER029C YLR326WQ06170 240 aaKnown RBP7.26□□□□□ -1.25
SMB1YER029C CST6P40535 587 aa7.25□□□□□ -1.25
SMB1YER029C PRT1P06103 763 aaKnown RBP7.24□□□□□ -1.25
SMB1YER029C ERG12P07277 443 aa7.24□□□□□ -1.25
SMB1YER029C PCS60P38137 543 aaKnown RBP RIP-Chip data7.24□□□□□ -1.25 RIP-Chip
SMB1YER029C UBP14P38237 781 aaKnown RBP7.23□□□□□ -1.25
SMB1YER029C STR2P47164 639 aa7.2□□□□□ -1.26
SMB1YER029C YRR1Q12172 810 aa7.2□□□□□ -1.26
SMB1YER029C RAD54P32863 898 aa7.18□□□□□ -1.26
SMB1YER029C ISM1P48526 1002 aa7.18□□□□□ -1.26
SMB1YER029C MET22P32179 357 aa7.16□□□□□ -1.26
SMB1YER029C FRK1Q03002 865 aaPredicted RBP7.16□□□□□ -1.26
SMB1YER029C RPP1BP10622 106 aaKnown RBP7.14□□□□□ -1.27
SMB1YER029C PEX21P50091 288 aa7.13□□□□□ -1.27
SMB1YER029C LAM6Q08001 693 aa7.13□□□□□ -1.27
SMB1YER029C NUD1P32336 851 aa7.1□□□□□ -1.27
SMB1YER029C TUM1Q08686 304 aaKnown RBP7.08□□□□□ -1.28
SMB1YER029C CDC4P07834 779 aa7.07□□□□□ -1.28
SMB1YER029C GCD11P32481 527 aaKnown RBP7.07□□□□□ -1.28
SMB1YER029C SPT16P32558 1035 aaKnown RBP7.07□□□□□ -1.28
SMB1YER029C ENV9Q08651 330 aa7.07□□□□□ -1.28
SMB1YER029C TY1A-DR4O74302 440 aa7.05□□□□□ -1.28
SMB1YER029C TY1A-HP0C2I4 478 aaKnown RBP7.05□□□□□ -1.28
SMB1YER029C TY1A-AP0CX57 440 aa7.05□□□□□ -1.28
SMB1YER029C TY1A-PR1P0CX58 440 aa7.05□□□□□ -1.28
SMB1YER029C TY1A-ORP0CX59 440 aa7.05□□□□□ -1.28
SMB1YER029C TY1A-PR2P0CX60 440 aa7.05□□□□□ -1.28
SMB1YER029C TY1A-DR5P0CX65 440 aa7.05□□□□□ -1.28
SMB1YER029C TY1A-ER2P0CX66 440 aa7.05□□□□□ -1.28
SMB1YER029C TY1A-GR3P0CX67 440 aa7.05□□□□□ -1.28
SMB1YER029C TY1A-LR1P0CX68 440 aa7.05□□□□□ -1.28
SMB1YER029C TY1A-MR2P0CX69 440 aa7.05□□□□□ -1.28
SMB1YER029C SEC2P17065 759 aa7.05□□□□□ -1.28
SMB1YER029C SET1P38827 1080 aaKnown RBP7.05□□□□□ -1.28
SMB1YER029C TY1A-JR2P47099 440 aa7.05□□□□□ -1.28
Retrieved 100 of 5,963 RNA–protein pairs in 9.2 ms