RNA–Protein interactions for RNA: YBR223C

TDP1, Transcript of Tyrosyl-DNA phosphodiesterase I, yeastyeast

Gene TDP1, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TDP1YBR223C TY1B-MR1Q04214 1755 aa9.68□□□□□ -0.86
TDP1YBR223C TY1B-MR2Q04670 1755 aaKnown RBP9.68□□□□□ -0.86
TDP1YBR223C TY1B-LR1Q12088 1755 aaKnown RBP9.68□□□□□ -0.86
TDP1YBR223C TY1B-NL1Q12112 1755 aa9.68□□□□□ -0.86
TDP1YBR223C TY1B-GR1Q12141 1755 aa9.68□□□□□ -0.86
TDP1YBR223C TY1B-BLQ12490 1755 aa9.68□□□□□ -0.86
TDP1YBR223C ESC1Q03661 1658 aaKnown RBP9.68□□□□□ -0.86
TDP1YBR223C GEA2P39993 1459 aaKnown RBP9.64□□□□□ -0.87
TDP1YBR223C VPS15P22219 1454 aa9.63□□□□□ -0.87
TDP1YBR223C NTE1Q04958 1679 aa9.62□□□□□ -0.87
TDP1YBR223C CAT8P39113 1433 aa9.61□□□□□ -0.87
TDP1YBR223C YBT1P32386 1661 aa9.61□□□□□ -0.87
TDP1YBR223C MTC1P47018 478 aaKnown RBP9.6□□□□□ -0.87
TDP1YBR223C RPA190P10964 1664 aaKnown RBP9.6□□□□□ -0.87
TDP1YBR223C RPO21P04050 1733 aaKnown RBP9.59□□□□□ -0.87
TDP1YBR223C DNF1P32660 1571 aa9.58□□□□□ -0.88
TDP1YBR223C IRC20Q06554 1556 aa9.58□□□□□ -0.88
TDP1YBR223C NUP159P40477 1460 aa9.53□□□□□ -0.88
TDP1YBR223C SRB8P25648 1427 aa9.53□□□□□ -0.88
TDP1YBR223C POL5P39985 1022 aaKnown RBP9.53□□□□□ -0.88
TDP1YBR223C CKB1P43639 278 aa9.51□□□□□ -0.89
TDP1YBR223C GDB1Q06625 1536 aa9.5□□□□□ -0.89
TDP1YBR223C MET10P39692 1035 aa9.49□□□□□ -0.89
TDP1YBR223C ARO1P08566 1588 aaKnown RBP9.48□□□□□ -0.89
TDP1YBR223C PDR10P51533 1564 aa9.47□□□□□ -0.89
TDP1YBR223C NSR1P27476 414 aaKnown RBP RIP-Chip data9.46□□□□□ -0.89not detected
TDP1YBR223C PDR12Q02785 1511 aa9.44□□□□□ -0.9
TDP1YBR223C NUP157P40064 1391 aaKnown RBP9.44□□□□□ -0.9
TDP1YBR223C SPO14P36126 1683 aa9.42□□□□□ -0.9
TDP1YBR223C BUD21Q08492 214 aaPredicted RBP9.42□□□□□ -0.9
TDP1YBR223C GCN2P15442 1659 aa9.42□□□□□ -0.9
TDP1YBR223C NOP7P53261 605 aaKnown RBP9.38□□□□□ -0.91
TDP1YBR223C BUD3P25558 1636 aa9.38□□□□□ -0.91
TDP1YBR223C MMS1Q06211 1407 aa9.38□□□□□ -0.91
TDP1YBR223C YRF1-1P0CX20 1796 aa9.38□□□□□ -0.91
TDP1YBR223C YRF1-5P0CX21 1796 aa9.38□□□□□ -0.91
TDP1YBR223C YRF1-8P0CX22 1796 aa9.38□□□□□ -0.91
TDP1YBR223C MET5P47169 1442 aa9.37□□□□□ -0.91
TDP1YBR223C ENP1P38333 483 aaKnown RBP9.34□□□□□ -0.91
TDP1YBR223C YSP2Q06681 1438 aa9.34□□□□□ -0.91
TDP1YBR223C SEC3P33332 1336 aaKnown RBP9.34□□□□□ -0.91
TDP1YBR223C PAF1P38351 445 aa9.32□□□□□ -0.92
TDP1YBR223C NOP2P40991 618 aaKnown RBP9.31□□□□□ -0.92
TDP1YBR223C IQG1Q12280 1495 aa9.31□□□□□ -0.92
TDP1YBR223C SPT7P35177 1332 aa9.3□□□□□ -0.92
TDP1YBR223C BNR1P40450 1375 aa9.28□□□□□ -0.92
TDP1YBR223C BFR2Q06631 534 aaKnown RBP9.26□□□□□ -0.93
TDP1YBR223C PDR5P33302 1511 aaKnown RBP9.26□□□□□ -0.93
TDP1YBR223C YOR093CQ12275 1648 aa9.23□□□□□ -0.93
TDP1YBR223C ORC1P54784 914 aaPredicted RBP9.22□□□□□ -0.93
TDP1YBR223C LTE1P07866 1435 aa9.2□□□□□ -0.94
TDP1YBR223C MHP1P43638 1398 aa9.2□□□□□ -0.94
TDP1YBR223C SEC7P11075 2009 aaKnown RBP9.19□□□□□ -0.94
TDP1YBR223C CHC1P22137 1653 aaKnown RBP9.19□□□□□ -0.94
TDP1YBR223C LEU3P08638 886 aa9.16□□□□□ -0.94
TDP1YBR223C RAV1P47104 1357 aa9.15□□□□□ -0.94
TDP1YBR223C RTC1Q08281 1341 aa9.14□□□□□ -0.95
TDP1YBR223C PSD2P53037 1138 aaKnown RBP9.13□□□□□ -0.95
TDP1YBR223C TRM3Q07527 1436 aa9.12□□□□□ -0.95
TDP1YBR223C TAF5P38129 798 aa9.12□□□□□ -0.95
TDP1YBR223C TY3B-IQ7LHG5 1498 aaKnown RBP9.12□□□□□ -0.95
TDP1YBR223C DOP1Q03921 1698 aa9.11□□□□□ -0.95
TDP1YBR223C PDR11P40550 1411 aa9.1□□□□□ -0.95
TDP1YBR223C VMR1P38735 1592 aa9.1□□□□□ -0.95
TDP1YBR223C ESL2P36168 1195 aa9.09□□□□□ -0.95
TDP1YBR223C IML1P47170 1584 aa9.08□□□□□ -0.96
TDP1YBR223C DRS2P39524 1355 aa9.08□□□□□ -0.96
TDP1YBR223C NUP188P52593 1655 aaKnown RBP9.07□□□□□ -0.96
TDP1YBR223C PRS1P32895 427 aaKnown RBP9.07□□□□□ -0.96
TDP1YBR223C KIP3P53086 805 aaKnown RBP9.07□□□□□ -0.96
TDP1YBR223C PDS5Q04264 1277 aa9.07□□□□□ -0.96
TDP1YBR223C YLR419WQ06698 1435 aaKnown RBP9.05□□□□□ -0.96
TDP1YBR223C SCT1P32784 759 aa9.05□□□□□ -0.96
TDP1YBR223C DNF2Q12675 1612 aa8.99□□□□□ -0.97
TDP1YBR223C NUP192P47054 1683 aa8.99□□□□□ -0.97
TDP1YBR223C URN1Q06525 465 aaKnown RBP8.98□□□□□ -0.97
TDP1YBR223C SPE2P21182 396 aa8.97□□□□□ -0.97
TDP1YBR223C TYS1P36421 394 aaKnown RBP8.96□□□□□ -0.98
TDP1YBR223C IPL1P38991 367 aa8.96□□□□□ -0.98
TDP1YBR223C NST1P53935 1240 aa8.94□□□□□ -0.98
TDP1YBR223C ITT1Q04638 464 aa8.94□□□□□ -0.98
TDP1YBR223C TAF8Q03750 510 aa8.92□□□□□ -0.98
TDP1YBR223C YAP3P38749 330 aa8.91□□□□□ -0.98
TDP1YBR223C ALD4P46367 519 aaKnown RBP8.9□□□□□ -0.99
TDP1YBR223C RAD9P14737 1309 aa8.89□□□□□ -0.99
TDP1YBR223C NAP1P25293 417 aaKnown RBP8.89□□□□□ -0.99
TDP1YBR223C RTG3P38165 486 aa8.89□□□□□ -0.99
TDP1YBR223C CHZ1P40019 153 aaPredicted RBP8.89□□□□□ -0.99
TDP1YBR223C BCK1Q01389 1478 aa8.87□□□□□ -0.99
TDP1YBR223C BNI1P41832 1953 aa8.86□□□□□ -0.99
TDP1YBR223C MLP1Q02455 1875 aaKnown RBP8.86□□□□□ -0.99
TDP1YBR223C CAB1Q04430 367 aa8.85□□□□□ -0.99
TDP1YBR223C RPP0P05317 312 aaKnown RBP8.84□□□□□ -0.99
TDP1YBR223C FKH1P40466 484 aa8.84□□□□□ -0.99
TDP1YBR223C VPS27P40343 622 aaKnown RBP8.83□□□□□ -1
TDP1YBR223C CDC45Q08032 650 aa8.83□□□□□ -1
TDP1YBR223C TFA1P36100 482 aa8.81□□□□□ -1
TDP1YBR223C FUN12P39730 1002 aaKnown RBP8.81□□□□□ -1
TDP1YBR223C CFT1Q06632 1357 aaKnown RBP8.81□□□□□ -1
TDP1YBR223C TRK1P12685 1235 aa8.79□□□□□ -1
Retrieved 100 of 5,963 RNA–protein pairs in 7.8 ms