RNA–Protein interactions for RNA: LSR1

LSR1, Transcript of U2 spliceosomal RNA (U2 snRNA), component of the spliceosome, yeastyeast

Gene LSR1, Length 1,175 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LSR1LSR1 TY1B-BLQ12490 1755 aa12.52□□□□□ -0.41
LSR1LSR1 TY3B-GQ99315 1547 aa12.52□□□□□ -0.41
LSR1LSR1 TSC11P40061 1430 aa12.51□□□□□ -0.41
LSR1LSR1 SNT2P53127 1403 aa12.48□□□□□ -0.41
LSR1LSR1 ESC1Q03661 1658 aaKnown RBP12.45□□□□□ -0.42
LSR1LSR1 PAN1P32521 1480 aa12.45□□□□□ -0.42
LSR1LSR1 IFH1P39520 1085 aa12.43□□□□□ -0.42
LSR1LSR1 YBT1P32386 1661 aa12.42□□□□□ -0.42
LSR1LSR1 IRC20Q06554 1556 aa12.37□□□□□ -0.43
LSR1LSR1 RPA190P10964 1664 aaKnown RBP12.35□□□□□ -0.43
LSR1LSR1 NTE1Q04958 1679 aa12.35□□□□□ -0.43
LSR1LSR1 RQC2Q12532 1038 aaKnown RBP12.33□□□□□ -0.44
LSR1LSR1 RPO21P04050 1733 aaKnown RBP12.33□□□□□ -0.44
LSR1LSR1 VPS15P22219 1454 aa12.32□□□□□ -0.44
LSR1LSR1 DNF1P32660 1571 aa12.3□□□□□ -0.44
LSR1LSR1 GEA2P39993 1459 aaKnown RBP12.28□□□□□ -0.44
LSR1LSR1 CAT8P39113 1433 aa12.24□□□□□ -0.45
LSR1LSR1 GDB1Q06625 1536 aa12.17□□□□□ -0.46
LSR1LSR1 ARO1P08566 1588 aaKnown RBP12.17□□□□□ -0.46
LSR1LSR1 PDR10P51533 1564 aa12.17□□□□□ -0.46
LSR1LSR1 NSR1P27476 414 aaKnown RBP RIP-Chip data12.13□□□□□ -0.47not detected
LSR1LSR1 NUP159P40477 1460 aa12.13□□□□□ -0.47
LSR1LSR1 RTT106P40161 455 aa12.12□□□□□ -0.47
LSR1LSR1 PDR12Q02785 1511 aa12.11□□□□□ -0.47
LSR1LSR1 SRB8P25648 1427 aa12.11□□□□□ -0.47
LSR1LSR1 GCN2P15442 1659 aa12.1□□□□□ -0.47
LSR1LSR1 SPO14P36126 1683 aa12.1□□□□□ -0.47
LSR1LSR1 YRF1-1P0CX20 1796 aa12.1□□□□□ -0.47
LSR1LSR1 YRF1-5P0CX21 1796 aa12.1□□□□□ -0.47
LSR1LSR1 YRF1-8P0CX22 1796 aa12.1□□□□□ -0.47
LSR1LSR1 PRY3P47033 881 aa12.04□□□□□ -0.48
LSR1LSR1 POL5P39985 1022 aaKnown RBP12.01□□□□□ -0.49
LSR1LSR1 BUD3P25558 1636 aa12□□□□□ -0.49
LSR1LSR1 NUP157P40064 1391 aaKnown RBP11.97□□□□□ -0.49
LSR1LSR1 PDR5P33302 1511 aaKnown RBP11.96□□□□□ -0.5
LSR1LSR1 YSP2Q06681 1438 aa11.95□□□□□ -0.5
LSR1LSR1 IQG1Q12280 1495 aa11.95□□□□□ -0.5
LSR1LSR1 MET10P39692 1035 aa11.94□□□□□ -0.5
LSR1LSR1 CKB1P43639 278 aa11.92□□□□□ -0.5
LSR1LSR1 MET5P47169 1442 aa11.9□□□□□ -0.5
LSR1LSR1 MMS1Q06211 1407 aa11.9□□□□□ -0.5
LSR1LSR1 YOR093CQ12275 1648 aa11.89□□□□□ -0.51
LSR1LSR1 ENP1P38333 483 aaKnown RBP11.86□□□□□ -0.51
LSR1LSR1 NOP2P40991 618 aaKnown RBP11.84□□□□□ -0.51
LSR1LSR1 BUD21Q08492 214 aaPredicted RBP11.83□□□□□ -0.52
LSR1LSR1 SEC3P33332 1336 aaKnown RBP11.83□□□□□ -0.52
LSR1LSR1 SPT7P35177 1332 aa11.83□□□□□ -0.52
LSR1LSR1 SEC7P11075 2009 aaKnown RBP11.82□□□□□ -0.52
LSR1LSR1 CHC1P22137 1653 aaKnown RBP11.82□□□□□ -0.52
LSR1LSR1 PRI1P10363 409 aa11.81□□□□□ -0.52
LSR1LSR1 NOP7P53261 605 aaKnown RBP11.77□□□□□ -0.53
LSR1LSR1 AAD16Q02895 342 aa11.76□□□□□ -0.53
LSR1LSR1 LTE1P07866 1435 aa11.76□□□□□ -0.53
LSR1LSR1 DIP2Q12220 943 aaPredicted RBP11.75□□□□□ -0.53
LSR1LSR1 TY3B-IQ7LHG5 1498 aaKnown RBP11.72□□□□□ -0.53
LSR1LSR1 BNR1P40450 1375 aa11.72□□□□□ -0.53
LSR1LSR1 VMR1P38735 1592 aa11.71□□□□□ -0.53
LSR1LSR1 PDR11P40550 1411 aa11.69□□□□□ -0.54
LSR1LSR1 MHP1P43638 1398 aa11.69□□□□□ -0.54
LSR1LSR1 BFR2Q06631 534 aaKnown RBP11.66□□□□□ -0.54
LSR1LSR1 RAV1P47104 1357 aa11.66□□□□□ -0.54
LSR1LSR1 DOP1Q03921 1698 aa11.65□□□□□ -0.54
LSR1LSR1 PAF1P38351 445 aa11.65□□□□□ -0.54
LSR1LSR1 NUP188P52593 1655 aaKnown RBP11.65□□□□□ -0.55
LSR1LSR1 YLR419WQ06698 1435 aaKnown RBP11.64□□□□□ -0.55
LSR1LSR1 RTC1Q08281 1341 aa11.61□□□□□ -0.55
LSR1LSR1 NUP192P47054 1683 aa11.61□□□□□ -0.55
LSR1LSR1 PRS1P32895 427 aaKnown RBP11.6□□□□□ -0.55
LSR1LSR1 IML1P47170 1584 aa11.59□□□□□ -0.55
LSR1LSR1 PSD2P53037 1138 aaKnown RBP11.59□□□□□ -0.55
LSR1LSR1 TRM3Q07527 1436 aa11.59□□□□□ -0.55
LSR1LSR1 ORC1P54784 914 aaPredicted RBP11.56□□□□□ -0.56
LSR1LSR1 DRS2P39524 1355 aa11.54□□□□□ -0.56
LSR1LSR1 DNF2Q12675 1612 aa11.53□□□□□ -0.56
LSR1LSR1 LEU3P08638 886 aa11.52□□□□□ -0.57
LSR1LSR1 ISW2Q08773 1120 aa11.52□□□□□ -0.57
LSR1LSR1 AVT3P36062 692 aa11.51□□□□□ -0.57
LSR1LSR1 TAF5P38129 798 aa11.48□□□□□ -0.57
LSR1LSR1 PDS5Q04264 1277 aa11.46□□□□□ -0.57
LSR1LSR1 NST1P53935 1240 aa11.44□□□□□ -0.58
LSR1LSR1 ESL2P36168 1195 aa11.43□□□□□ -0.58
LSR1LSR1 RPG1P38249 964 aaKnown RBP11.43□□□□□ -0.58
LSR1LSR1 KIP3P53086 805 aaKnown RBP11.42□□□□□ -0.58
LSR1LSR1 BNI1P41832 1953 aa11.39□□□□□ -0.59
LSR1LSR1 MLP1Q02455 1875 aaKnown RBP11.38□□□□□ -0.59
LSR1LSR1 BCK1Q01389 1478 aa11.34□□□□□ -0.59
LSR1LSR1 YCK3P39962 524 aa11.34□□□□□ -0.59
LSR1LSR1 SPE2P21182 396 aa11.33□□□□□ -0.6
LSR1LSR1 TYS1P36421 394 aaKnown RBP11.33□□□□□ -0.6
LSR1LSR1 YAP3P38749 330 aa11.31□□□□□ -0.6
LSR1LSR1 IPL1P38991 367 aa11.3□□□□□ -0.6
LSR1LSR1 CFT1Q06632 1357 aaKnown RBP11.28□□□□□ -0.6
LSR1LSR1 RAD9P14737 1309 aa11.27□□□□□ -0.61
LSR1LSR1 HAP1P0CE41 1502 aa11.25□□□□□ -0.61
LSR1LSR1 ALD4P46367 519 aaKnown RBP11.25□□□□□ -0.61
LSR1LSR1 ITT1Q04638 464 aa11.25□□□□□ -0.61
LSR1LSR1 SCT1P32784 759 aa11.24□□□□□ -0.61
LSR1LSR1 RTG3P38165 486 aa11.24□□□□□ -0.61
LSR1LSR1 FKH1P40466 484 aa11.23□□□□□ -0.61
LSR1LSR1 TAF8Q03750 510 aa11.23□□□□□ -0.61
Retrieved 100 of 5,963 RNA–protein pairs in 24.5 ms