RNA–Protein interactions for RNA: ENST00000639092.1

ARHGEF9-238, Transcript of Cdc42 guanine nucleotide exchange factor 9, human

TSL 5

Gene ARHGEF9, Length 4,657 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ARHGEF9-238	ENST00000639092	SLC24A1	O60721	1099 aa		11.7	□□□□□ -0.54
ARHGEF9-238	ENST00000639092	SOGA1	O94964	1423 aa		11.69	□□□□□ -0.54
ARHGEF9-238	ENST00000639092	CHIC2	Q9UKJ5	165 aa		11.68	□□□□□ -0.54
ARHGEF9-238	ENST00000639092	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	11.65	□□□□□ -0.54
ARHGEF9-238	ENST00000639092	GTF3C3	Q9Y5Q9	886 aa		11.64	□□□□□ -0.55
ARHGEF9-238	ENST00000639092	VPS8	Q8N3P4	1428 aa		11.63	□□□□□ -0.55
ARHGEF9-238	ENST00000639092	EIF4G1	Q04637	1599 aa	Known RBP	11.63	□□□□□ -0.55
ARHGEF9-238	ENST00000639092	CARMIL2	Q6F5E8	1435 aa		11.62	□□□□□ -0.55
ARHGEF9-238	ENST00000639092	HMGXB3	Q12766	1538 aa		11.61	□□□□□ -0.55
ARHGEF9-238	ENST00000639092	FMN1	Q68DA7	1419 aa		11.61	□□□□□ -0.55
ARHGEF9-238	ENST00000639092	RAPGEF2	Q9Y4G8	1499 aa		11.6	□□□□□ -0.55
ARHGEF9-238	ENST00000639092	FANCD2	Q9BXW9	1451 aa		11.6	□□□□□ -0.55
ARHGEF9-238	ENST00000639092	DDX10	Q13206	875 aa	Known RBP	11.56	□□□□□ -0.56
ARHGEF9-238	ENST00000639092	PLPPR3	Q6T4P5	718 aa		11.56	□□□□□ -0.56
ARHGEF9-238	ENST00000639092	CFDP1	Q9UEE9	299 aa	Predicted RBP	11.55	□□□□□ -0.56
ARHGEF9-238	ENST00000639092	KCNH8	Q96L42	1107 aa		11.55	□□□□□ -0.56
ARHGEF9-238	ENST00000639092	TMC1	Q8TDI8	760 aa		11.55	□□□□□ -0.56
ARHGEF9-238	ENST00000639092	HNRNPU	Q00839	825 aa	Known RBP eCLIP	11.54	□□□□□ -0.56
ARHGEF9-238	ENST00000639092	TIMELESS	Q9UNS1	1208 aa		11.54	□□□□□ -0.56
ARHGEF9-238	ENST00000639092	KDM2A	Q9Y2K7	1162 aa		11.53	□□□□□ -0.56
ARHGEF9-238	ENST00000639092	CCNB3	Q8WWL7	1395 aa		11.53	□□□□□ -0.56
ARHGEF9-238	ENST00000639092	BCL11A	Q9H165	835 aa		11.53	□□□□□ -0.56
ARHGEF9-238	ENST00000639092	RRP7BP	Q9NSQ0	103 aa		11.52	□□□□□ -0.57
ARHGEF9-238	ENST00000639092	EIF4G2	P78344	907 aa	Known RBP eCLIP	11.51	□□□□□ -0.57
ARHGEF9-238	ENST00000639092	CFTR	P13569	1480 aa		11.51	□□□□□ -0.57
ARHGEF9-238	ENST00000639092	TDRD9	Q8NDG6	1382 aa	Known RBP	11.5	□□□□□ -0.57
ARHGEF9-238	ENST00000639092	ANP32A	P39687	249 aa	Known RBP	11.5	□□□□□ -0.57
ARHGEF9-238	ENST00000639092	FAM9B	Q8IZU0	186 aa		11.5	□□□□□ -0.57
ARHGEF9-238	ENST00000639092	WDR43	Q15061	677 aa	Known RBP eCLIP	11.5	□□□□□ -0.57
ARHGEF9-238	ENST00000639092	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	11.49	□□□□□ -0.57
ARHGEF9-238	ENST00000639092	PPP1R15A	O75807	674 aa	Predicted RBP	11.48	□□□□□ -0.57
ARHGEF9-238	ENST00000639092	ARHGAP35	Q9NRY4	1499 aa		11.48	□□□□□ -0.57
ARHGEF9-238	ENST00000639092	MRS2	Q9HD23	443 aa		11.47	□□□□□ -0.57
ARHGEF9-238	ENST00000639092	BICRA	Q9NZM4	1560 aa		11.45	□□□□□ -0.58
ARHGEF9-238	ENST00000639092	CDCA8	Q53HL2	280 aa		11.44	□□□□□ -0.58
ARHGEF9-238	ENST00000639092	UPF2	Q9HAU5	1272 aa	Known RBP	11.44	□□□□□ -0.58
ARHGEF9-238	ENST00000639092	PEG3	Q9GZU2	1588 aa		11.44	□□□□□ -0.58
ARHGEF9-238	ENST00000639092	FGD5	Q6ZNL6	1462 aa		11.44	□□□□□ -0.58
ARHGEF9-238	ENST00000639092	RSPH4A	Q5TD94	716 aa		11.44	□□□□□ -0.58
ARHGEF9-238	ENST00000639092	FKBP8	Q14318	412 aa		11.42	□□□□□ -0.58
ARHGEF9-238	ENST00000639092	SALL2	Q9Y467	1007 aa	Predicted RBP	11.41	□□□□□ -0.58
ARHGEF9-238	ENST00000639092	GAPVD1	Q14C86	1478 aa		11.41	□□□□□ -0.58
ARHGEF9-238	ENST00000639092	ERICH3	Q5RHP9	1530 aa		11.41	□□□□□ -0.58
ARHGEF9-238	ENST00000639092	IGF1R	P08069	1367 aa		11.4	□□□□□ -0.58
ARHGEF9-238	ENST00000639092	RGL3	Q3MIN7	710 aa		11.4	□□□□□ -0.58
ARHGEF9-238	ENST00000639092	ARID4B	Q4LE39	1312 aa	Predicted RBP	11.4	□□□□□ -0.59
ARHGEF9-238	ENST00000639092	CCDC18	Q5T9S5	1454 aa		11.39	□□□□□ -0.59
ARHGEF9-238	ENST00000639092	SETD5	Q9C0A6	1442 aa		11.39	□□□□□ -0.59
ARHGEF9-238	ENST00000639092	CC2D2A	Q9P2K1	1620 aa		11.39	□□□□□ -0.59
ARHGEF9-238	ENST00000639092	HSP90AA1	P07900	732 aa	Known RBP	11.38	□□□□□ -0.59
ARHGEF9-238	ENST00000639092	KIF21B	O75037	1637 aa		11.38	□□□□□ -0.59
ARHGEF9-238	ENST00000639092	CCDC136	Q96JN2	1154 aa		11.38	□□□□□ -0.59
ARHGEF9-238	ENST00000639092	C14orf37	Q86TY3	774 aa		11.37	□□□□□ -0.59
ARHGEF9-238	ENST00000639092	KANK1	Q14678	1352 aa		11.37	□□□□□ -0.59
ARHGEF9-238	ENST00000639092	NPM2	Q86SE8	214 aa	Known RBP	11.37	□□□□□ -0.59
ARHGEF9-238	ENST00000639092	CFAP53	Q96M91	514 aa		11.36	□□□□□ -0.59
ARHGEF9-238	ENST00000639092	SCAF1	Q9H7N4	1312 aa	Known RBP	11.36	□□□□□ -0.59
ARHGEF9-238	ENST00000639092	JPH4	Q96JJ6	628 aa		11.36	□□□□□ -0.59
ARHGEF9-238	ENST00000639092	TOP2B	Q02880	1626 aa		11.35	□□□□□ -0.59
ARHGEF9-238	ENST00000639092	EFCAB2	Q5VUJ9	269 aa		11.35	□□□□□ -0.59
ARHGEF9-238	ENST00000639092	MRC2	Q9UBG0	1479 aa		11.34	□□□□□ -0.59
ARHGEF9-238	ENST00000639092	CARD11	Q9BXL7	1154 aa		11.34	□□□□□ -0.59
ARHGEF9-238	ENST00000639092	GRIN2B	Q13224	1484 aa		11.33	□□□□□ -0.6
ARHGEF9-238	ENST00000639092	KNSTRN	Q9Y448	316 aa		11.33	□□□□□ -0.6
ARHGEF9-238	ENST00000639092	IFT140	Q96RY7	1462 aa		11.33	□□□□□ -0.6
ARHGEF9-238	ENST00000639092	MYH16	Q9H6N6	1097 aa		11.33	□□□□□ -0.6
ARHGEF9-238	ENST00000639092	ANKRD30A	Q9BXX3	1397 aa		11.33	□□□□□ -0.6
ARHGEF9-238	ENST00000639092	HIRIP3	Q9BW71	556 aa	Predicted RBP	11.33	□□□□□ -0.6
ARHGEF9-238	ENST00000639092	LAMC3	Q9Y6N6	1575 aa		11.33	□□□□□ -0.6
ARHGEF9-238	ENST00000639092	FHOD3	Q2V2M9	1422 aa		11.31	□□□□□ -0.6
ARHGEF9-238	ENST00000639092	RUSC2	Q8N2Y8	1516 aa		11.3	□□□□□ -0.6
ARHGEF9-238	ENST00000639092	DNMBP	Q6XZF7	1577 aa		11.3	□□□□□ -0.6
ARHGEF9-238	ENST00000639092	ANP32B	Q92688	251 aa	Known RBP	11.3	□□□□□ -0.6
ARHGEF9-238	ENST00000639092	MIER1	Q8N108	512 aa		11.29	□□□□□ -0.6
ARHGEF9-238	ENST00000639092	KANK4	Q5T7N3	995 aa	Predicted RBP	11.29	□□□□□ -0.6
ARHGEF9-238	ENST00000639092	POGK	Q9P215	609 aa		11.28	□□□□□ -0.6
ARHGEF9-238	ENST00000639092	TOPBP1	Q92547	1522 aa		11.28	□□□□□ -0.6
ARHGEF9-238	ENST00000639092	PTPRG	P23470	1445 aa		11.28	□□□□□ -0.6
ARHGEF9-238	ENST00000639092	EFCAB5	A4FU69	1503 aa		11.28	□□□□□ -0.6
ARHGEF9-238	ENST00000639092	HDGF	P51858	240 aa	Known RBP	11.27	□□□□□ -0.61
ARHGEF9-238	ENST00000639092	HAP1	P54257	671 aa	Predicted RBP	11.27	□□□□□ -0.61
ARHGEF9-238	ENST00000639092	RAD54L2	Q9Y4B4	1467 aa		11.27	□□□□□ -0.61
ARHGEF9-238	ENST00000639092	SYNJ1	O43426	1573 aa		11.26	□□□□□ -0.61
ARHGEF9-238	ENST00000639092	PRX	Q9BXM0	1461 aa		11.26	□□□□□ -0.61
ARHGEF9-238	ENST00000639092	ZBTB7C	A1YPR0	619 aa		11.26	□□□□□ -0.61
ARHGEF9-238	ENST00000639092	NUDC	Q9Y266	331 aa		11.26	□□□□□ -0.61
ARHGEF9-238	ENST00000639092		A0A0G2JS52	829 aa		11.26	□□□□□ -0.61
ARHGEF9-238	ENST00000639092	SENP3	Q9H4L4	574 aa	Predicted RBP	11.26	□□□□□ -0.61
ARHGEF9-238	ENST00000639092	CUX1	P39880	1505 aa		11.25	□□□□□ -0.61
ARHGEF9-238	ENST00000639092	CASKIN1	Q8WXD9	1431 aa		11.23	□□□□□ -0.61
ARHGEF9-238	ENST00000639092	UNC13A	Q9UPW8	1703 aa		11.23	□□□□□ -0.61
ARHGEF9-238	ENST00000639092	MAPK8IP3	Q9UPT6	1336 aa		11.22	□□□□□ -0.61
ARHGEF9-238	ENST00000639092	SIN3A	Q96ST3	1273 aa		11.22	□□□□□ -0.61
ARHGEF9-238	ENST00000639092	POLA1	P09884	1462 aa	Predicted RBP	11.21	□□□□□ -0.61
ARHGEF9-238	ENST00000639092	ABCA10	Q8WWZ4	1543 aa		11.21	□□□□□ -0.61
ARHGEF9-238	ENST00000639092	RAB3GAP2	Q9H2M9	1393 aa		11.21	□□□□□ -0.61
ARHGEF9-238	ENST00000639092	PPM1G	O15355	546 aa	Predicted RBP	11.21	□□□□□ -0.62
ARHGEF9-238	ENST00000639092	TMF1	P82094	1093 aa		11.21	□□□□□ -0.62
ARHGEF9-238	ENST00000639092	PLEKHG5	O94827	1062 aa		11.2	□□□□□ -0.62
ARHGEF9-238	ENST00000639092	OSCAR	Q8IYS5	282 aa		11.2	□□□□□ -0.62

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