RNA–Protein interactions for RNA: ENST00000636661.1

CLCN2-215, Transcript of chloride voltage-gated channel 2, humanhuman

TSL 5

Gene CLCN2, Length 4,378 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN2-215ENST00000636661 KIF27Q86VH2 1401 aa22.23■■□□□ 1.15
CLCN2-215ENST00000636661 CANXP27824 592 aaKnown RBP22.23■■□□□ 1.15
CLCN2-215ENST00000636661 CCDC136Q96JN2 1154 aa22.21■■□□□ 1.15
CLCN2-215ENST00000636661 SUPT16HQ9Y5B9 1047 aaKnown RBP22.19■■□□□ 1.14
CLCN2-215ENST00000636661 NBR1Q14596 966 aa22.16■■□□□ 1.14
CLCN2-215ENST00000636661 CCNB3Q8WWL7 1395 aa22.15■■□□□ 1.14
CLCN2-215ENST00000636661 WIZO95785 1651 aa22.14■■□□□ 1.13
CLCN2-215ENST00000636661 CHGAP10645 457 aaKnown RBP22.12■■□□□ 1.13
CLCN2-215ENST00000636661 VPS8Q8N3P4 1428 aa22.11■■□□□ 1.13
CLCN2-215ENST00000636661 TSPY4P0CV99 314 aa22.11■■□□□ 1.13
CLCN2-215ENST00000636661 TSPY10P0CW01 314 aa22.11■■□□□ 1.13
CLCN2-215ENST00000636661 RUSC2Q8N2Y8 1516 aa22.05■■□□□ 1.12
CLCN2-215ENST00000636661 RGL3Q3MIN7 710 aa22.05■■□□□ 1.12
CLCN2-215ENST00000636661 CHMP7Q8WUX9 453 aaPredicted RBP22.05■■□□□ 1.12
CLCN2-215ENST00000636661 CARMIL1Q5VZK9 1371 aa21.99■■□□□ 1.11
CLCN2-215ENST00000636661 CUX2O14529 1486 aa21.98■■□□□ 1.11
CLCN2-215ENST00000636661 SENP3Q9H4L4 574 aaPredicted RBP21.97■■□□□ 1.11
CLCN2-215ENST00000636661 ZBTB47Q9UFB7 747 aaPredicted RBP21.96■■□□□ 1.11
CLCN2-215ENST00000636661 CFDP1Q9UEE9 299 aaPredicted RBP21.93■■□□□ 1.1
CLCN2-215ENST00000636661 SLC24A1O60721 1099 aa21.93■■□□□ 1.1
CLCN2-215ENST00000636661 KCNH8Q96L42 1107 aa21.92■■□□□ 1.1
CLCN2-215ENST00000636661 FOXD1Q16676 465 aa21.91■■□□□ 1.1
CLCN2-215ENST00000636661 RAB3GAP2Q9H2M9 1393 aa21.9■■□□□ 1.1
CLCN2-215ENST00000636661 ANP32EQ9BTT0 268 aa21.9■■□□□ 1.1
CLCN2-215ENST00000636661 B4GALNT3Q6L9W6 998 aa21.88■■□□□ 1.09
CLCN2-215ENST00000636661 RAPGEF2Q9Y4G8 1499 aa21.88■■□□□ 1.09
CLCN2-215ENST00000636661 WDR43Q15061 677 aaKnown RBP eCLIP21.87■■□□□ 1.09
CLCN2-215ENST00000636661 PLEKHD1A6NEE1 506 aa21.86■■□□□ 1.09
CLCN2-215ENST00000636661 SETD5Q9C0A6 1442 aa21.86■■□□□ 1.09
CLCN2-215ENST00000636661 NEFMP07197 916 aa21.85■■□□□ 1.09
CLCN2-215ENST00000636661 CARD11Q9BXL7 1154 aa21.85■■□□□ 1.09
CLCN2-215ENST00000636661 FHAD1B1AJZ9 1412 aa21.81■■□□□ 1.08
CLCN2-215ENST00000636661 TOP2AP11388 1531 aaKnown RBP21.8■■□□□ 1.08
CLCN2-215ENST00000636661 HSPA5P11021 654 aaKnown RBP21.79■■□□□ 1.08
CLCN2-215ENST00000636661 ARXQ96QS3 562 aa21.77■■□□□ 1.08
CLCN2-215ENST00000636661 PPP4R2Q9NY27 417 aa21.74■■□□□ 1.07
CLCN2-215ENST00000636661 EIF5BO60841 1220 aaKnown RBP21.74■■□□□ 1.07
CLCN2-215ENST00000636661 PPP1R15AO75807 674 aaPredicted RBP21.74■■□□□ 1.07
CLCN2-215ENST00000636661 DHX57Q6P158 1386 aaKnown RBP21.73■■□□□ 1.07
CLCN2-215ENST00000636661 RBM19Q9Y4C8 960 aaKnown RBP21.73■■□□□ 1.07
CLCN2-215ENST00000636661 TIMELESSQ9UNS1 1208 aa21.72■■□□□ 1.07
CLCN2-215ENST00000636661 STAG3Q9UJ98 1225 aa21.72■■□□□ 1.07
CLCN2-215ENST00000636661 TDRD9Q8NDG6 1382 aaKnown RBP21.71■■□□□ 1.07
CLCN2-215ENST00000636661 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.71■■□□□ 1.07
CLCN2-215ENST00000636661 CCER2I3L3R5 266 aa21.7■■□□□ 1.06
CLCN2-215ENST00000636661 PLPPR3Q6T4P5 718 aa21.69■■□□□ 1.06
CLCN2-215ENST00000636661 TSHZ2Q9NRE2 1034 aa21.69■■□□□ 1.06
CLCN2-215ENST00000636661 DCAF11Q8TEB1 546 aa21.68■■□□□ 1.06
CLCN2-215ENST00000636661 CC2D1BQ5T0F9 858 aaKnown RBP21.67■■□□□ 1.06
CLCN2-215ENST00000636661 UPF2Q9HAU5 1272 aaKnown RBP21.66■■□□□ 1.06
CLCN2-215ENST00000636661 ARHGAP35Q9NRY4 1499 aa21.66■■□□□ 1.06
CLCN2-215ENST00000636661 EIF4G1Q04637 1599 aaKnown RBP21.65■■□□□ 1.06
CLCN2-215ENST00000636661 HSP90AA1P07900 732 aaKnown RBP21.65■■□□□ 1.06
CLCN2-215ENST00000636661 NPM1P06748 294 aaKnown RBP eCLIP21.65■■□□□ 1.06
CLCN2-215ENST00000636661 NEUROD2Q15784 382 aa21.64■■□□□ 1.05
CLCN2-215ENST00000636661 FHOD3Q2V2M9 1422 aa21.62■■□□□ 1.05
CLCN2-215ENST00000636661 KNSTRNQ9Y448 316 aa21.61■■□□□ 1.05
CLCN2-215ENST00000636661 MPHOSPH9Q99550 1183 aa21.6■■□□□ 1.05
CLCN2-215ENST00000636661 PKD2Q13563 968 aa21.59■■□□□ 1.05
CLCN2-215ENST00000636661 L3MBTL2Q969R5 705 aa21.59■■□□□ 1.05
CLCN2-215ENST00000636661 LAS1LQ9Y4W2 734 aaKnown RBP21.59■■□□□ 1.05
CLCN2-215ENST00000636661 ATAD2BQ9ULI0 1458 aa21.58■■□□□ 1.04
CLCN2-215ENST00000636661 SMARCA2P51531 1590 aa21.57■■□□□ 1.04
CLCN2-215ENST00000636661 SMARCA4P51532 1647 aa21.57■■□□□ 1.04
CLCN2-215ENST00000636661 TNNT2P45379 298 aaPredicted RBP21.56■■□□□ 1.04
CLCN2-215ENST00000636661 RGS3P49796 1198 aa21.55■■□□□ 1.04
CLCN2-215ENST00000636661 ESF1Q9H501 851 aaKnown RBP21.53■■□□□ 1.04
CLCN2-215ENST00000636661 NOP58Q9Y2X3 529 aaKnown RBP21.48■■□□□ 1.03
CLCN2-215ENST00000636661 FRAT1Q92837 279 aaPredicted RBP21.45■■□□□ 1.02
CLCN2-215ENST00000636661 FMN1Q68DA7 1419 aa21.44■■□□□ 1.02
CLCN2-215ENST00000636661 PPM1GO15355 546 aaPredicted RBP21.43■■□□□ 1.02
CLCN2-215ENST00000636661 CADPSQ9ULU8 1353 aa21.43■■□□□ 1.02
CLCN2-215ENST00000636661 RTN4Q9NQC3 1192 aaKnown RBP21.43■■□□□ 1.02
CLCN2-215ENST00000636661 CDCA8Q53HL2 280 aa21.39■■□□□ 1.01
CLCN2-215ENST00000636661 PLEKHG5O94827 1062 aa21.37■■□□□ 1.01
CLCN2-215ENST00000636661 NUP155O75694 1391 aa21.37■■□□□ 1.01
CLCN2-215ENST00000636661 DDRGK1Q96HY6 314 aa21.36■■□□□ 1.01
CLCN2-215ENST00000636661 TMF1P82094 1093 aa21.36■■□□□ 1.01
CLCN2-215ENST00000636661 IGF1RP08069 1367 aa21.33■■□□□ 1
CLCN2-215ENST00000636661 ANP32BQ92688 251 aaKnown RBP21.32■■□□□ 1
CLCN2-215ENST00000636661 ERCC6Q03468 1493 aa21.31■■□□□ 1
CLCN2-215ENST00000636661 CFAP53Q96M91 514 aa21.31■■□□□ 1
CLCN2-215ENST00000636661 KIF21BO75037 1637 aa21.3■■□□□ 1
CLCN2-215ENST00000636661 HNRNPMP52272 730 aaKnown RBP eCLIP21.3■■□□□ 1
CLCN2-215ENST00000636661 RCAN3Q9UKA8 241 aa21.29■■□□□ 1
CLCN2-215ENST00000636661 DEKP35659 375 aaKnown RBP21.29■■□□□ 1
CLCN2-215ENST00000636661 PHLDB1Q86UU1 1377 aa21.29■■□□□ 1
CLCN2-215ENST00000636661 SAFB2Q14151 953 aaKnown RBP eCLIP21.29■■□□□ 1
CLCN2-215ENST00000636661 FTSJ3Q8IY81 847 aaKnown RBP21.29■■□□□ 1
CLCN2-215ENST00000636661 BECN1Q14457 450 aa21.28■■□□□ 1
CLCN2-215ENST00000636661 PRKRIP1Q9H875 184 aaPredicted RBP21.28■■□□□ 1
CLCN2-215ENST00000636661 U2SURPO15042 1029 aaKnown RBP21.27■□□□□ 0.99
CLCN2-215ENST00000636661 ST20-MTHFSA0A0A6YYL1 179 aa21.25■□□□□ 0.99
CLCN2-215ENST00000636661 ROCK2O75116 1388 aaKnown RBP21.25■□□□□ 0.99
CLCN2-215ENST00000636661 NUDCQ9Y266 331 aa21.24■□□□□ 0.99
CLCN2-215ENST00000636661 MYH16Q9H6N6 1097 aa21.22■□□□□ 0.99
CLCN2-215ENST00000636661 KTN1Q86UP2 1357 aaKnown RBP21.22■□□□□ 0.99
CLCN2-215ENST00000636661 ARAP1Q96P48 1450 aa21.21■□□□□ 0.99
CLCN2-215ENST00000636661 PDS5BQ9NTI5 1447 aa21.21■□□□□ 0.99
CLCN2-215ENST00000636661 CCDC18Q5T9S5 1454 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 168.6 ms