RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 NUP160Q12769 1436 aa22.61■■□□□ 1.21
CLN3-242ENST00000635958 CTTNBP2Q8WZ74 1663 aa22.61■■□□□ 1.21
CLN3-242ENST00000635958 KIAA0586Q9BVV6 1533 aa22.58■■□□□ 1.2
CLN3-242ENST00000635958 CLIP1P30622 1438 aa22.57■■□□□ 1.2
CLN3-242ENST00000635958 CHD1O14646 1710 aa22.56■■□□□ 1.2
CLN3-242ENST00000635958 CEP170Q5SW79 1584 aa22.55■■□□□ 1.2
CLN3-242ENST00000635958 IQGAP2Q13576 1575 aa22.51■■□□□ 1.19
CLN3-242ENST00000635958 OSCARQ8IYS5 282 aa22.47■■□□□ 1.19
CLN3-242ENST00000635958 ARHGAP35Q9NRY4 1499 aa22.47■■□□□ 1.19
CLN3-242ENST00000635958 RANGAP1P46060 587 aaPredicted RBP22.47■■□□□ 1.19
CLN3-242ENST00000635958 UGGT2Q9NYU1 1516 aa22.45■■□□□ 1.18
CLN3-242ENST00000635958 EFCAB5A4FU69 1503 aa22.44■■□□□ 1.18
CLN3-242ENST00000635958 JPH4Q96JJ6 628 aa22.41■■□□□ 1.18
CLN3-242ENST00000635958 SAMD9Q5K651 1589 aa22.4■■□□□ 1.18
CLN3-242ENST00000635958 ARAP1Q96P48 1450 aa22.39■■□□□ 1.17
CLN3-242ENST00000635958 CLASP1Q7Z460 1538 aa22.38■■□□□ 1.17
CLN3-242ENST00000635958 DISP1Q96F81 1524 aa22.34■■□□□ 1.17
CLN3-242ENST00000635958 VPS8Q8N3P4 1428 aa22.33■■□□□ 1.16
CLN3-242ENST00000635958 SHROOM2Q13796 1616 aa22.32■■□□□ 1.16
CLN3-242ENST00000635958 P3H3Q8IVL6 736 aa22.31■■□□□ 1.16
CLN3-242ENST00000635958 FHOD3Q2V2M9 1422 aa22.3■■□□□ 1.16
CLN3-242ENST00000635958 CARMIL2Q6F5E8 1435 aa22.28■■□□□ 1.16
CLN3-242ENST00000635958 KIAA0556O60303 1618 aa22.28■■□□□ 1.16
CLN3-242ENST00000635958 PRG4Q92954 1404 aaPredicted RBP22.26■■□□□ 1.15
CLN3-242ENST00000635958 FMN1Q68DA7 1419 aa22.24■■□□□ 1.15
CLN3-242ENST00000635958 RIMBP3CA6NJZ7 1639 aa22.17■■□□□ 1.14
CLN3-242ENST00000635958 RIMBP3BA6NNM3 1639 aa22.17■■□□□ 1.14
CLN3-242ENST00000635958 RIMBP3Q9UFD9 1639 aa22.17■■□□□ 1.14
CLN3-242ENST00000635958 CASKIN1Q8WXD9 1431 aa22.16■■□□□ 1.14
CLN3-242ENST00000635958 ARHGEF11O15085 1522 aa22.15■■□□□ 1.14
CLN3-242ENST00000635958 ERCC6L2Q5T890 1561 aa22.13■■□□□ 1.13
CLN3-242ENST00000635958 FYCO1Q9BQS8 1478 aa22.12■■□□□ 1.13
CLN3-242ENST00000635958 PTPRGP23470 1445 aa22.1■■□□□ 1.13
CLN3-242ENST00000635958 PCF11O94913 1555 aaKnown RBP22.1■■□□□ 1.13
CLN3-242ENST00000635958 MAP3K1Q13233 1512 aa22.06■■□□□ 1.12
CLN3-242ENST00000635958 APLP2Q06481 763 aa22.06■■□□□ 1.12
CLN3-242ENST00000635958 TTBK1Q5TCY1 1321 aaPredicted RBP22.03■■□□□ 1.12
CLN3-242ENST00000635958 ABCA8O94911 1581 aa22.02■■□□□ 1.12
CLN3-242ENST00000635958 RAPGEF6Q8TEU7 1601 aa22.02■■□□□ 1.12
CLN3-242ENST00000635958 PLB1Q6P1J6 1458 aa22.02■■□□□ 1.12
CLN3-242ENST00000635958 ATP1B4Q9UN42 357 aaPredicted RBP22.01■■□□□ 1.11
CLN3-242ENST00000635958 HECW1Q76N89 1606 aa22■■□□□ 1.11
CLN3-242ENST00000635958 NUP153P49790 1475 aaKnown RBP21.98■■□□□ 1.11
CLN3-242ENST00000635958 UACAQ9BZF9 1416 aa21.98■■□□□ 1.11
CLN3-242ENST00000635958 TIAM1Q13009 1591 aa21.98■■□□□ 1.11
CLN3-242ENST00000635958 CCDC18Q5T9S5 1454 aa21.96■■□□□ 1.11
CLN3-242ENST00000635958 EPRSP07814 1512 aaKnown RBP21.96■■□□□ 1.11
CLN3-242ENST00000635958 LRRIQ1Q96JM4 1722 aa21.95■■□□□ 1.1
CLN3-242ENST00000635958 CFAP43Q8NDM7 1665 aa21.94■■□□□ 1.1
CLN3-242ENST00000635958 KANK4Q5T7N3 995 aaPredicted RBP21.93■■□□□ 1.1
CLN3-242ENST00000635958 UHRF1BP1LA0JNW5 1464 aa21.92■■□□□ 1.1
CLN3-242ENST00000635958 CYB5RLQ6IPT4 315 aa21.92■■□□□ 1.1
CLN3-242ENST00000635958 PPARGC1BQ86YN6 1023 aaKnown RBP21.91■■□□□ 1.1
CLN3-242ENST00000635958 ABCC2Q92887 1545 aa21.9■■□□□ 1.1
CLN3-242ENST00000635958 LRRC9Q6ZRR7 1453 aa21.9■■□□□ 1.1
CLN3-242ENST00000635958 CDK13Q14004 1512 aaKnown RBP21.87■■□□□ 1.09
CLN3-242ENST00000635958 ATP10BO94823 1461 aa21.87■■□□□ 1.09
CLN3-242ENST00000635958 HRCP23327 699 aa21.85■■□□□ 1.09
CLN3-242ENST00000635958 ARID3CA6NKF2 412 aa21.83■■□□□ 1.08
CLN3-242ENST00000635958 CDK11AQ9UQ88 783 aaPredicted RBP21.83■■□□□ 1.08
CLN3-242ENST00000635958 KDM5BQ9UGL1 1544 aa21.82■■□□□ 1.08
CLN3-242ENST00000635958 MTUS2Q5JR59 1369 aa21.81■■□□□ 1.08
CLN3-242ENST00000635958 ADCY10Q96PN6 1610 aa21.8■■□□□ 1.08
CLN3-242ENST00000635958 MAGI3Q5TCQ9 1506 aa21.8■■□□□ 1.08
CLN3-242ENST00000635958 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.78■■□□□ 1.08
CLN3-242ENST00000635958 HNRNPUL2Q1KMD3 747 aaKnown RBP21.78■■□□□ 1.08
CLN3-242ENST00000635958 EHBP1L1Q8N3D4 1523 aa21.78■■□□□ 1.08
CLN3-242ENST00000635958 PLEKHD1A6NEE1 506 aa21.76■■□□□ 1.07
CLN3-242ENST00000635958 TROQ12816 1431 aaPredicted RBP21.75■■□□□ 1.07
CLN3-242ENST00000635958 TRIM26Q12899 539 aaPredicted RBP21.73■■□□□ 1.07
CLN3-242ENST00000635958 ZCCHC11Q5TAX3 1644 aaKnown RBP21.72■■□□□ 1.07
CLN3-242ENST00000635958 SUPT6HQ7KZ85 1726 aaKnown RBP21.69■■□□□ 1.06
CLN3-242ENST00000635958 NCOA2Q15596 1464 aa21.69■■□□□ 1.06
CLN3-242ENST00000635958 PHLDB1Q86UU1 1377 aa21.66■■□□□ 1.06
CLN3-242ENST00000635958 NPM1P06748 294 aaKnown RBP eCLIP21.66■■□□□ 1.06
CLN3-242ENST00000635958 RRBP1Q9P2E9 1410 aaKnown RBP21.62■■□□□ 1.05
CLN3-242ENST00000635958 KIF14Q15058 1648 aa21.59■■□□□ 1.05
CLN3-242ENST00000635958 MYOM3Q5VTT5 1437 aa21.58■■□□□ 1.05
CLN3-242ENST00000635958 ASXL2Q76L83 1435 aa21.58■■□□□ 1.05
CLN3-242ENST00000635958 ABCC10Q5T3U5 1492 aa21.58■■□□□ 1.05
CLN3-242ENST00000635958 WDR7Q9Y4E6 1490 aa21.58■■□□□ 1.05
CLN3-242ENST00000635958 CCNB3Q8WWL7 1395 aa21.55■■□□□ 1.04
CLN3-242ENST00000635958 TRHP20396 242 aaPredicted RBP21.55■■□□□ 1.04
CLN3-242ENST00000635958 PCGF6Q9BYE7 350 aa21.55■■□□□ 1.04
CLN3-242ENST00000635958 FGD6Q6ZV73 1430 aa21.55■■□□□ 1.04
CLN3-242ENST00000635958 MAPKBP1O60336 1514 aa21.54■■□□□ 1.04
CLN3-242ENST00000635958 MIA2Q96PC5 1412 aa21.53■■□□□ 1.04
CLN3-242ENST00000635958 KCNH8Q96L42 1107 aa21.53■■□□□ 1.04
CLN3-242ENST00000635958 GPATCH8Q9UKJ3 1502 aaKnown RBP21.53■■□□□ 1.04
CLN3-242ENST00000635958 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.53■■□□□ 1.04
CLN3-242ENST00000635958 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.51■■□□□ 1.03
CLN3-242ENST00000635958 ITSN2Q9NZM3 1697 aa21.46■■□□□ 1.03
CLN3-242ENST00000635958 TCOF1Q13428 1488 aaKnown RBP21.46■■□□□ 1.03
CLN3-242ENST00000635958 CDC42BPAQ5VT25 1732 aa21.46■■□□□ 1.03
CLN3-242ENST00000635958 TTC37Q6PGP7 1564 aa21.46■■□□□ 1.03
CLN3-242ENST00000635958 CFDP1Q9UEE9 299 aaPredicted RBP21.45■■□□□ 1.03
CLN3-242ENST00000635958 ABCA9Q8IUA7 1624 aa21.44■■□□□ 1.02
CLN3-242ENST00000635958 PTPN23Q9H3S7 1636 aa21.44■■□□□ 1.02
CLN3-242ENST00000635958 PLCH2O75038 1416 aa21.42■■□□□ 1.02
CLN3-242ENST00000635958 FAM50AQ14320 339 aaKnown RBP21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms