RNA–Protein interactions for RNA: ENST00000634712.2

LINC00339-207, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-207ENST00000634712 PRG4Q92954 1404 aaPredicted RBP26.43■■□□□ 1.82
LINC00339-207ENST00000634712 KIAA0586Q9BVV6 1533 aa26.43■■□□□ 1.82
LINC00339-207ENST00000634712 ERCC6L2Q5T890 1561 aa26.42■■□□□ 1.82
LINC00339-207ENST00000634712 RAPGEF2Q9Y4G8 1499 aa26.39■■□□□ 1.81
LINC00339-207ENST00000634712 TRHP20396 242 aaPredicted RBP26.3■■□□□ 1.8
LINC00339-207ENST00000634712 CHIC1Q5VXU3 224 aa26.25■■□□□ 1.79
LINC00339-207ENST00000634712 CSRNP3Q8WYN3 585 aa26.25■■□□□ 1.79
LINC00339-207ENST00000634712 IQGAP2Q13576 1575 aa26.24■■□□□ 1.79
LINC00339-207ENST00000634712 CARMIL2Q6F5E8 1435 aa26.21■■□□□ 1.79
LINC00339-207ENST00000634712 PRXQ9BXM0 1461 aa26.2■■□□□ 1.79
LINC00339-207ENST00000634712 EEA1Q15075 1411 aa26.2■■□□□ 1.78
LINC00339-207ENST00000634712 FAM9AQ8IZU1 332 aaPredicted RBP26.18■■□□□ 1.78
LINC00339-207ENST00000634712 TTBK1Q5TCY1 1321 aaPredicted RBP26.16■■□□□ 1.78
LINC00339-207ENST00000634712 NPM1P06748 294 aaKnown RBP eCLIP26.13■■□□□ 1.77
LINC00339-207ENST00000634712 PTPRGP23470 1445 aa26.13■■□□□ 1.77
LINC00339-207ENST00000634712 TNIKQ9UKE5 1360 aa26.11■■□□□ 1.77
LINC00339-207ENST00000634712 CTTNBP2Q8WZ74 1663 aa26.08■■□□□ 1.77
LINC00339-207ENST00000634712 UGGT2Q9NYU1 1516 aa26.07■■□□□ 1.76
LINC00339-207ENST00000634712 DISP1Q96F81 1524 aa26.04■■□□□ 1.76
LINC00339-207ENST00000634712 GOLGA3Q08378 1498 aa25.99■■□□□ 1.75
LINC00339-207ENST00000634712 ADCY10Q96PN6 1610 aa25.97■■□□□ 1.75
LINC00339-207ENST00000634712 KIAA0556O60303 1618 aa25.97■■□□□ 1.75
LINC00339-207ENST00000634712 UACAQ9BZF9 1416 aa25.92■■□□□ 1.74
LINC00339-207ENST00000634712 EHMT2Q96KQ7 1210 aa25.88■■□□□ 1.73
LINC00339-207ENST00000634712 KIF21BO75037 1637 aa25.88■■□□□ 1.73
LINC00339-207ENST00000634712 RANGAP1P46060 587 aaPredicted RBP25.87■■□□□ 1.73
LINC00339-207ENST00000634712 P3H3Q8IVL6 736 aa25.87■■□□□ 1.73
LINC00339-207ENST00000634712 UHRF1BP1LA0JNW5 1464 aa25.86■■□□□ 1.73
LINC00339-207ENST00000634712 MAPKBP1O60336 1514 aa25.85■■□□□ 1.73
LINC00339-207ENST00000634712 ABCC2Q92887 1545 aa25.85■■□□□ 1.73
LINC00339-207ENST00000634712 UBTFP17480 764 aaKnown RBP25.84■■□□□ 1.73
LINC00339-207ENST00000634712 FAM69CQ0P6D2 419 aa25.83■■□□□ 1.73
LINC00339-207ENST00000634712 ABCC10Q5T3U5 1492 aa25.79■■□□□ 1.72
LINC00339-207ENST00000634712 PLB1Q6P1J6 1458 aa25.76■■□□□ 1.71
LINC00339-207ENST00000634712 KIF13AQ9H1H9 1805 aa25.75■■□□□ 1.71
LINC00339-207ENST00000634712 KDM5BQ9UGL1 1544 aa25.73■■□□□ 1.71
LINC00339-207ENST00000634712 ASXL2Q76L83 1435 aa25.73■■□□□ 1.71
LINC00339-207ENST00000634712 SAMD9Q5K651 1589 aa25.72■■□□□ 1.71
LINC00339-207ENST00000634712 DIP2BQ9P265 1576 aa25.69■■□□□ 1.7
LINC00339-207ENST00000634712 ABCA8O94911 1581 aa25.69■■□□□ 1.7
LINC00339-207ENST00000634712 ZCCHC11Q5TAX3 1644 aaKnown RBP25.67■■□□□ 1.7
LINC00339-207ENST00000634712 FHOD3Q2V2M9 1422 aa25.64■■□□□ 1.69
LINC00339-207ENST00000634712 EFCAB5A4FU69 1503 aa25.62■■□□□ 1.69
LINC00339-207ENST00000634712 ARID3CA6NKF2 412 aa25.62■■□□□ 1.69
LINC00339-207ENST00000634712 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.56■■□□□ 1.68
LINC00339-207ENST00000634712 HNRNPUL2Q1KMD3 747 aaKnown RBP25.56■■□□□ 1.68
LINC00339-207ENST00000634712 KCNH8Q96L42 1107 aa25.56■■□□□ 1.68
LINC00339-207ENST00000634712 WDR7Q9Y4E6 1490 aa25.55■■□□□ 1.68
LINC00339-207ENST00000634712 EPRSP07814 1512 aaKnown RBP25.55■■□□□ 1.68
LINC00339-207ENST00000634712 RAPGEF6Q8TEU7 1601 aa25.55■■□□□ 1.68
LINC00339-207ENST00000634712 TSPOAP1O95153 1857 aa25.55■■□□□ 1.68
LINC00339-207ENST00000634712 GLI2P10070 1586 aa25.54■■□□□ 1.68
LINC00339-207ENST00000634712 ATP10BO94823 1461 aa25.52■■□□□ 1.68
LINC00339-207ENST00000634712 ARHGAP35Q9NRY4 1499 aa25.47■■□□□ 1.67
LINC00339-207ENST00000634712 ATP1B4Q9UN42 357 aaPredicted RBP25.45■■□□□ 1.67
LINC00339-207ENST00000634712 FMN1Q68DA7 1419 aa25.45■■□□□ 1.66
LINC00339-207ENST00000634712 NUP153P49790 1475 aaKnown RBP25.44■■□□□ 1.66
LINC00339-207ENST00000634712 PLEKHD1A6NEE1 506 aa25.41■■□□□ 1.66
LINC00339-207ENST00000634712 MAP3K4Q9Y6R4 1608 aa25.4■■□□□ 1.66
LINC00339-207ENST00000634712 CD109Q6YHK3 1445 aa25.39■■□□□ 1.65
LINC00339-207ENST00000634712 TEX14Q8IWB6 1497 aa25.38■■□□□ 1.65
LINC00339-207ENST00000634712 KDM6BO15054 1643 aa25.38■■□□□ 1.65
LINC00339-207ENST00000634712 PPRC1Q5VV67 1664 aaKnown RBP25.35■■□□□ 1.65
LINC00339-207ENST00000634712 CFAP43Q8NDM7 1665 aa25.33■■□□□ 1.65
LINC00339-207ENST00000634712 CLIP1P30622 1438 aa25.31■■□□□ 1.64
LINC00339-207ENST00000634712 HECW1Q76N89 1606 aa25.29■■□□□ 1.64
LINC00339-207ENST00000634712 MAGI3Q5TCQ9 1506 aa25.28■■□□□ 1.64
LINC00339-207ENST00000634712 CDK11AQ9UQ88 783 aaPredicted RBP25.28■■□□□ 1.64
LINC00339-207ENST00000634712 CDK13Q14004 1512 aaKnown RBP25.27■■□□□ 1.64
LINC00339-207ENST00000634712 ABCA9Q8IUA7 1624 aa25.23■■□□□ 1.63
LINC00339-207ENST00000634712 LOC105371045A0A1W2PR82 267 aa25.21■■□□□ 1.63
LINC00339-207ENST00000634712 CASKIN1Q8WXD9 1431 aa25.2■■□□□ 1.62
LINC00339-207ENST00000634712 COL17A1Q9UMD9 1497 aaPredicted RBP25.18■■□□□ 1.62
LINC00339-207ENST00000634712 PHLDB1Q86UU1 1377 aa25.15■■□□□ 1.62
LINC00339-207ENST00000634712 CEP162Q5TB80 1403 aa25.15■■□□□ 1.62
LINC00339-207ENST00000634712 PCF11O94913 1555 aaKnown RBP25.14■■□□□ 1.61
LINC00339-207ENST00000634712 CCDC18Q5T9S5 1454 aa25.12■■□□□ 1.61
LINC00339-207ENST00000634712 AEBP2Q6ZN18 517 aaPredicted RBP25.12■■□□□ 1.61
LINC00339-207ENST00000634712 FYCO1Q9BQS8 1478 aa25.11■■□□□ 1.61
LINC00339-207ENST00000634712 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.11■■□□□ 1.61
LINC00339-207ENST00000634712 TROQ12816 1431 aaPredicted RBP25.09■■□□□ 1.61
LINC00339-207ENST00000634712 NEO1Q92859 1461 aa25.09■■□□□ 1.61
LINC00339-207ENST00000634712 ARAP3Q8WWN8 1544 aa25.07■■□□□ 1.6
LINC00339-207ENST00000634712 LRRIQ1Q96JM4 1722 aa25.07■■□□□ 1.6
LINC00339-207ENST00000634712 TTC37Q6PGP7 1564 aa25.05■■□□□ 1.6
LINC00339-207ENST00000634712 KIF14Q15058 1648 aa25.03■■□□□ 1.6
LINC00339-207ENST00000634712 FANCAO15360 1455 aa25.02■■□□□ 1.6
LINC00339-207ENST00000634712 RAPGEF3O95398 923 aa25.01■■□□□ 1.59
LINC00339-207ENST00000634712 PLCH2O75038 1416 aa25.01■■□□□ 1.59
LINC00339-207ENST00000634712 AKNAQ7Z591 1439 aa25.01■■□□□ 1.59
LINC00339-207ENST00000634712 EFCAB2Q5VUJ9 269 aa24.99■■□□□ 1.59
LINC00339-207ENST00000634712 CFAP74Q9C0B2 1584 aa24.99■■□□□ 1.59
LINC00339-207ENST00000634712 DENND4BO75064 1496 aaPredicted RBP24.94■■□□□ 1.58
LINC00339-207ENST00000634712 MYO5CQ9NQX4 1742 aa24.94■■□□□ 1.58
LINC00339-207ENST00000634712 MTUS2Q5JR59 1369 aa24.91■■□□□ 1.58
LINC00339-207ENST00000634712 KDM4FA0A1W2PPD8 638 aa24.9■■□□□ 1.58
LINC00339-207ENST00000634712 ADGRL1O94910 1474 aa24.9■■□□□ 1.58
LINC00339-207ENST00000634712 ARHGAP5Q13017 1502 aa24.89■■□□□ 1.58
LINC00339-207ENST00000634712 SCAPERQ9BY12 1400 aa24.88■■□□□ 1.57
LINC00339-207ENST00000634712 VPS8Q8N3P4 1428 aa24.85■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms