RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 JPH4Q96JJ6 628 aa24.15■■□□□ 1.46
PNKP-223ENST00000629179 PRG4Q92954 1404 aaPredicted RBP24.1■■□□□ 1.45
PNKP-223ENST00000629179 KIAA0586Q9BVV6 1533 aa24.09■■□□□ 1.45
PNKP-223ENST00000629179 RAPGEF2Q9Y4G8 1499 aa24.02■■□□□ 1.44
PNKP-223ENST00000629179 TRHP20396 242 aaPredicted RBP23.94■■□□□ 1.42
PNKP-223ENST00000629179 IQGAP2Q13576 1575 aa23.93■■□□□ 1.42
PNKP-223ENST00000629179 PRXQ9BXM0 1461 aa23.89■■□□□ 1.42
PNKP-223ENST00000629179 CHIC1Q5VXU3 224 aa23.89■■□□□ 1.41
PNKP-223ENST00000629179 CSRNP3Q8WYN3 585 aa23.87■■□□□ 1.41
PNKP-223ENST00000629179 CTTNBP2Q8WZ74 1663 aa23.84■■□□□ 1.41
PNKP-223ENST00000629179 CARMIL2Q6F5E8 1435 aa23.83■■□□□ 1.4
PNKP-223ENST00000629179 TTBK1Q5TCY1 1321 aaPredicted RBP23.82■■□□□ 1.4
PNKP-223ENST00000629179 FAM9AQ8IZU1 332 aaPredicted RBP23.81■■□□□ 1.4
PNKP-223ENST00000629179 PTPRGP23470 1445 aa23.79■■□□□ 1.4
PNKP-223ENST00000629179 EEA1Q15075 1411 aa23.79■■□□□ 1.4
PNKP-223ENST00000629179 DISP1Q96F81 1524 aa23.79■■□□□ 1.4
PNKP-223ENST00000629179 UGGT2Q9NYU1 1516 aa23.79■■□□□ 1.4
PNKP-223ENST00000629179 TNIKQ9UKE5 1360 aa23.78■■□□□ 1.4
PNKP-223ENST00000629179 ADCY10Q96PN6 1610 aa23.77■■□□□ 1.4
PNKP-223ENST00000629179 KIAA0556O60303 1618 aa23.71■■□□□ 1.39
PNKP-223ENST00000629179 NPM1P06748 294 aaKnown RBP eCLIP23.71■■□□□ 1.39
PNKP-223ENST00000629179 GOLGA3Q08378 1498 aa23.63■■□□□ 1.37
PNKP-223ENST00000629179 KIF13AQ9H1H9 1805 aa23.63■■□□□ 1.37
PNKP-223ENST00000629179 UACAQ9BZF9 1416 aa23.61■■□□□ 1.37
PNKP-223ENST00000629179 MAPKBP1O60336 1514 aa23.6■■□□□ 1.37
PNKP-223ENST00000629179 KIF21BO75037 1637 aa23.59■■□□□ 1.37
PNKP-223ENST00000629179 UHRF1BP1LA0JNW5 1464 aa23.58■■□□□ 1.37
PNKP-223ENST00000629179 ABCC2Q92887 1545 aa23.58■■□□□ 1.36
PNKP-223ENST00000629179 P3H3Q8IVL6 736 aa23.56■■□□□ 1.36
PNKP-223ENST00000629179 EHMT2Q96KQ7 1210 aa23.55■■□□□ 1.36
PNKP-223ENST00000629179 ABCC10Q5T3U5 1492 aa23.54■■□□□ 1.36
PNKP-223ENST00000629179 RANGAP1P46060 587 aaPredicted RBP23.53■■□□□ 1.36
PNKP-223ENST00000629179 FAM69CQ0P6D2 419 aa23.53■■□□□ 1.36
PNKP-223ENST00000629179 PLB1Q6P1J6 1458 aa23.51■■□□□ 1.35
PNKP-223ENST00000629179 DIP2BQ9P265 1576 aa23.5■■□□□ 1.35
PNKP-223ENST00000629179 SAMD9Q5K651 1589 aa23.48■■□□□ 1.35
PNKP-223ENST00000629179 KDM5BQ9UGL1 1544 aa23.48■■□□□ 1.35
PNKP-223ENST00000629179 ABCA8O94911 1581 aa23.47■■□□□ 1.35
PNKP-223ENST00000629179 ZCCHC11Q5TAX3 1644 aaKnown RBP23.47■■□□□ 1.35
PNKP-223ENST00000629179 ASXL2Q76L83 1435 aa23.46■■□□□ 1.35
PNKP-223ENST00000629179 UBTFP17480 764 aaKnown RBP23.45■■□□□ 1.34
PNKP-223ENST00000629179 TSPOAP1O95153 1857 aa23.43■■□□□ 1.34
PNKP-223ENST00000629179 FHOD3Q2V2M9 1422 aa23.37■■□□□ 1.33
PNKP-223ENST00000629179 ARID3CA6NKF2 412 aa23.35■■□□□ 1.33
PNKP-223ENST00000629179 EFCAB5A4FU69 1503 aa23.33■■□□□ 1.32
PNKP-223ENST00000629179 GLI2P10070 1586 aa23.32■■□□□ 1.32
PNKP-223ENST00000629179 RAPGEF6Q8TEU7 1601 aa23.32■■□□□ 1.32
PNKP-223ENST00000629179 EPRSP07814 1512 aaKnown RBP23.32■■□□□ 1.32
PNKP-223ENST00000629179 WDR7Q9Y4E6 1490 aa23.3■■□□□ 1.32
PNKP-223ENST00000629179 ATP10BO94823 1461 aa23.29■■□□□ 1.32
PNKP-223ENST00000629179 KCNH8Q96L42 1107 aa23.27■■□□□ 1.32
PNKP-223ENST00000629179 PPRC1Q5VV67 1664 aaKnown RBP23.25■■□□□ 1.31
PNKP-223ENST00000629179 MAP3K4Q9Y6R4 1608 aa23.23■■□□□ 1.31
PNKP-223ENST00000629179 ARHGAP35Q9NRY4 1499 aa23.23■■□□□ 1.31
PNKP-223ENST00000629179 NUP153P49790 1475 aaKnown RBP23.22■■□□□ 1.31
PNKP-223ENST00000629179 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.2■■□□□ 1.3
PNKP-223ENST00000629179 HNRNPUL2Q1KMD3 747 aaKnown RBP23.2■■□□□ 1.3
PNKP-223ENST00000629179 KDM6BO15054 1643 aa23.18■■□□□ 1.3
PNKP-223ENST00000629179 CFAP43Q8NDM7 1665 aa23.14■■□□□ 1.29
PNKP-223ENST00000629179 FMN1Q68DA7 1419 aa23.12■■□□□ 1.29
PNKP-223ENST00000629179 CD109Q6YHK3 1445 aa23.12■■□□□ 1.29
PNKP-223ENST00000629179 TEX14Q8IWB6 1497 aa23.11■■□□□ 1.29
PNKP-223ENST00000629179 ATP1B4Q9UN42 357 aaPredicted RBP23.1■■□□□ 1.29
PNKP-223ENST00000629179 PLEKHD1A6NEE1 506 aa23.08■■□□□ 1.29
PNKP-223ENST00000629179 CDK13Q14004 1512 aaKnown RBP23.07■■□□□ 1.28
PNKP-223ENST00000629179 MAGI3Q5TCQ9 1506 aa23.06■■□□□ 1.28
PNKP-223ENST00000629179 ABCA9Q8IUA7 1624 aa23.05■■□□□ 1.28
PNKP-223ENST00000629179 COL17A1Q9UMD9 1497 aaPredicted RBP23.05■■□□□ 1.28
PNKP-223ENST00000629179 HECW1Q76N89 1606 aa23.04■■□□□ 1.28
PNKP-223ENST00000629179 CLIP1P30622 1438 aa23.03■■□□□ 1.28
PNKP-223ENST00000629179 LRRIQ1Q96JM4 1722 aa22.99■■□□□ 1.27
PNKP-223ENST00000629179 LOC105371045A0A1W2PR82 267 aa22.95■■□□□ 1.26
PNKP-223ENST00000629179 PCF11O94913 1555 aaKnown RBP22.95■■□□□ 1.26
PNKP-223ENST00000629179 CASKIN1Q8WXD9 1431 aa22.93■■□□□ 1.26
PNKP-223ENST00000629179 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.92■■□□□ 1.26
PNKP-223ENST00000629179 CDK11AQ9UQ88 783 aaPredicted RBP22.91■■□□□ 1.26
PNKP-223ENST00000629179 TTC37Q6PGP7 1564 aa22.9■■□□□ 1.26
PNKP-223ENST00000629179 CEP162Q5TB80 1403 aa22.89■■□□□ 1.25
PNKP-223ENST00000629179 ARAP3Q8WWN8 1544 aa22.87■■□□□ 1.25
PNKP-223ENST00000629179 PHLDB1Q86UU1 1377 aa22.86■■□□□ 1.25
PNKP-223ENST00000629179 NEO1Q92859 1461 aa22.85■■□□□ 1.25
PNKP-223ENST00000629179 FYCO1Q9BQS8 1478 aa22.85■■□□□ 1.25
PNKP-223ENST00000629179 AEBP2Q6ZN18 517 aaPredicted RBP22.85■■□□□ 1.25
PNKP-223ENST00000629179 CCDC18Q5T9S5 1454 aa22.85■■□□□ 1.25
PNKP-223ENST00000629179 TROQ12816 1431 aaPredicted RBP22.84■■□□□ 1.25
PNKP-223ENST00000629179 KIF14Q15058 1648 aa22.84■■□□□ 1.25
PNKP-223ENST00000629179 FANCAO15360 1455 aa22.8■■□□□ 1.24
PNKP-223ENST00000629179 RAPGEF3O95398 923 aa22.8■■□□□ 1.24
PNKP-223ENST00000629179 AKNAQ7Z591 1439 aa22.79■■□□□ 1.24
PNKP-223ENST00000629179 MYO5CQ9NQX4 1742 aa22.79■■□□□ 1.24
PNKP-223ENST00000629179 PLCH2O75038 1416 aa22.78■■□□□ 1.24
PNKP-223ENST00000629179 CFAP74Q9C0B2 1584 aa22.77■■□□□ 1.24
PNKP-223ENST00000629179 KDM4FA0A1W2PPD8 638 aa22.76■■□□□ 1.23
PNKP-223ENST00000629179 FRMPD1Q5SYB0 1578 aa22.73■■□□□ 1.23
PNKP-223ENST00000629179 DENND4BO75064 1496 aaPredicted RBP22.72■■□□□ 1.23
PNKP-223ENST00000629179 RICTORQ6R327 1708 aa22.71■■□□□ 1.23
PNKP-223ENST00000629179 EFCAB2Q5VUJ9 269 aa22.71■■□□□ 1.23
PNKP-223ENST00000629179 CDC42BPBQ9Y5S2 1711 aa22.69■■□□□ 1.22
PNKP-223ENST00000629179 ADGRL1O94910 1474 aa22.68■■□□□ 1.22
PNKP-223ENST00000629179 ARHGAP5Q13017 1502 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms