RNA–Protein interactions for RNA: ENST00000629088.1

PNKP-222, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-222ENST00000629088 RUSC2Q8N2Y8 1516 aa27.66■■■□□ 2.02
PNKP-222ENST00000629088 IGF1RP08069 1367 aa27.62■■■□□ 2.01
PNKP-222ENST00000629088 CUL7Q14999 1698 aa27.62■■■□□ 2.01
PNKP-222ENST00000629088 NPM1P06748 294 aaKnown RBP eCLIP27.59■■■□□ 2.01
PNKP-222ENST00000629088 FAM69CQ0P6D2 419 aa27.58■■■□□ 2.01
PNKP-222ENST00000629088 KIF13AQ9H1H9 1805 aa27.57■■■□□ 2
PNKP-222ENST00000629088 KIAA0586Q9BVV6 1533 aa27.55■■■□□ 2
PNKP-222ENST00000629088 ABCC10Q5T3U5 1492 aa27.53■■■□□ 2
PNKP-222ENST00000629088 MAPKBP1O60336 1514 aa27.48■■□□□ 1.99
PNKP-222ENST00000629088 ADCY10Q96PN6 1610 aa27.48■■□□□ 1.99
PNKP-222ENST00000629088 CARMIL1Q5VZK9 1371 aa27.45■■□□□ 1.98
PNKP-222ENST00000629088 DIP2BQ9P265 1576 aa27.4■■□□□ 1.98
PNKP-222ENST00000629088 PTPRGP23470 1445 aa27.36■■□□□ 1.97
PNKP-222ENST00000629088 TTBK1Q5TCY1 1321 aaPredicted RBP27.36■■□□□ 1.97
PNKP-222ENST00000629088 IQGAP2Q13576 1575 aa27.28■■□□□ 1.96
PNKP-222ENST00000629088 TNIKQ9UKE5 1360 aa27.28■■□□□ 1.96
PNKP-222ENST00000629088 CARMIL2Q6F5E8 1435 aa27.27■■□□□ 1.96
PNKP-222ENST00000629088 KDM6BO15054 1643 aa27.23■■□□□ 1.95
PNKP-222ENST00000629088 RAPGEF2Q9Y4G8 1499 aa27.22■■□□□ 1.95
PNKP-222ENST00000629088 ABCC2Q92887 1545 aa27.21■■□□□ 1.95
PNKP-222ENST00000629088 KDM4FA0A1W2PPD8 638 aa27.2■■□□□ 1.94
PNKP-222ENST00000629088 TSPOAP1O95153 1857 aa27.18■■□□□ 1.94
PNKP-222ENST00000629088 ASXL2Q76L83 1435 aa27.16■■□□□ 1.94
PNKP-222ENST00000629088 PLB1Q6P1J6 1458 aa27.13■■□□□ 1.93
PNKP-222ENST00000629088 DISP1Q96F81 1524 aa27.13■■□□□ 1.93
PNKP-222ENST00000629088 UGGT2Q9NYU1 1516 aa27.13■■□□□ 1.93
PNKP-222ENST00000629088 UACAQ9BZF9 1416 aa27.13■■□□□ 1.93
PNKP-222ENST00000629088 UHRF1BP1LA0JNW5 1464 aa27.13■■□□□ 1.93
PNKP-222ENST00000629088 GLI2P10070 1586 aa27.06■■□□□ 1.92
PNKP-222ENST00000629088 KIAA0556O60303 1618 aa27.02■■□□□ 1.92
PNKP-222ENST00000629088 KDM5BQ9UGL1 1544 aa27■■□□□ 1.91
PNKP-222ENST00000629088 PPRC1Q5VV67 1664 aaKnown RBP27■■□□□ 1.91
PNKP-222ENST00000629088 EPRSP07814 1512 aaKnown RBP26.99■■□□□ 1.91
PNKP-222ENST00000629088 CTTNBP2Q8WZ74 1663 aa26.98■■□□□ 1.91
PNKP-222ENST00000629088 PRXQ9BXM0 1461 aa26.98■■□□□ 1.91
PNKP-222ENST00000629088 COL17A1Q9UMD9 1497 aaPredicted RBP26.95■■□□□ 1.91
PNKP-222ENST00000629088 GOLGA3Q08378 1498 aa26.93■■□□□ 1.9
PNKP-222ENST00000629088 ZCCHC11Q5TAX3 1644 aaKnown RBP26.9■■□□□ 1.9
PNKP-222ENST00000629088 MAP3K4Q9Y6R4 1608 aa26.87■■□□□ 1.89
PNKP-222ENST00000629088 TEX14Q8IWB6 1497 aa26.86■■□□□ 1.89
PNKP-222ENST00000629088 ADGRL1O94910 1474 aa26.85■■□□□ 1.89
PNKP-222ENST00000629088 WDR7Q9Y4E6 1490 aa26.83■■□□□ 1.89
PNKP-222ENST00000629088 KCNH8Q96L42 1107 aa26.78■■□□□ 1.88
PNKP-222ENST00000629088 ABCA8O94911 1581 aa26.78■■□□□ 1.88
PNKP-222ENST00000629088 EEA1Q15075 1411 aa26.74■■□□□ 1.87
PNKP-222ENST00000629088 CSRNP3Q8WYN3 585 aa26.74■■□□□ 1.87
PNKP-222ENST00000629088 CD109Q6YHK3 1445 aa26.73■■□□□ 1.87
PNKP-222ENST00000629088 MAGI3Q5TCQ9 1506 aa26.69■■□□□ 1.86
PNKP-222ENST00000629088 FAM9AQ8IZU1 332 aaPredicted RBP26.68■■□□□ 1.86
PNKP-222ENST00000629088 ARID3CA6NKF2 412 aa26.64■■□□□ 1.86
PNKP-222ENST00000629088 P3H3Q8IVL6 736 aa26.64■■□□□ 1.86
PNKP-222ENST00000629088 SAMD9Q5K651 1589 aa26.63■■□□□ 1.85
PNKP-222ENST00000629088 ILDR1Q86SU0 546 aaPredicted RBP26.62■■□□□ 1.85
PNKP-222ENST00000629088 CFAP43Q8NDM7 1665 aa26.6■■□□□ 1.85
PNKP-222ENST00000629088 ATP10BO94823 1461 aa26.56■■□□□ 1.84
PNKP-222ENST00000629088 HECW2Q9P2P5 1572 aa26.54■■□□□ 1.84
PNKP-222ENST00000629088 RAPGEF6Q8TEU7 1601 aa26.49■■□□□ 1.83
PNKP-222ENST00000629088 ARAP3Q8WWN8 1544 aa26.49■■□□□ 1.83
PNKP-222ENST00000629088 KIF21BO75037 1637 aa26.47■■□□□ 1.83
PNKP-222ENST00000629088 ABCA9Q8IUA7 1624 aa26.42■■□□□ 1.82
PNKP-222ENST00000629088 EFCAB5A4FU69 1503 aa26.41■■□□□ 1.82
PNKP-222ENST00000629088 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.41■■□□□ 1.82
PNKP-222ENST00000629088 RAPGEF3O95398 923 aa26.41■■□□□ 1.82
PNKP-222ENST00000629088 HNRNPUL2Q1KMD3 747 aaKnown RBP26.41■■□□□ 1.82
PNKP-222ENST00000629088 PHLDB1Q86UU1 1377 aa26.41■■□□□ 1.82
PNKP-222ENST00000629088 NUP153P49790 1475 aaKnown RBP26.39■■□□□ 1.82
PNKP-222ENST00000629088 RANGAP1P46060 587 aaPredicted RBP26.39■■□□□ 1.82
PNKP-222ENST00000629088 FHOD3Q2V2M9 1422 aa26.39■■□□□ 1.81
PNKP-222ENST00000629088 NEO1Q92859 1461 aa26.32■■□□□ 1.8
PNKP-222ENST00000629088 PLEKHD1A6NEE1 506 aa26.26■■□□□ 1.79
PNKP-222ENST00000629088 CHIC1Q5VXU3 224 aa26.26■■□□□ 1.79
PNKP-222ENST00000629088 PTPRMP28827 1452 aa26.25■■□□□ 1.79
PNKP-222ENST00000629088 ARID4BQ4LE39 1312 aaPredicted RBP26.23■■□□□ 1.79
PNKP-222ENST00000629088 ADAMTSL3P82987 1691 aa26.23■■□□□ 1.79
PNKP-222ENST00000629088 FRMPD1Q5SYB0 1578 aa26.23■■□□□ 1.79
PNKP-222ENST00000629088 UBTFP17480 764 aaKnown RBP26.18■■□□□ 1.78
PNKP-222ENST00000629088 AKNAQ7Z591 1439 aa26.17■■□□□ 1.78
PNKP-222ENST00000629088 DENND4BO75064 1496 aaPredicted RBP26.17■■□□□ 1.78
PNKP-222ENST00000629088 FMN1Q68DA7 1419 aa26.16■■□□□ 1.78
PNKP-222ENST00000629088 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.14■■□□□ 1.77
PNKP-222ENST00000629088 CFAP74Q9C0B2 1584 aa26.13■■□□□ 1.77
PNKP-222ENST00000629088 BCORL1Q5H9F3 1711 aa26.13■■□□□ 1.77
PNKP-222ENST00000629088 FANCAO15360 1455 aa26.12■■□□□ 1.77
PNKP-222ENST00000629088 ARHGAP35Q9NRY4 1499 aa26.12■■□□□ 1.77
PNKP-222ENST00000629088 HECW1Q76N89 1606 aa26.1■■□□□ 1.77
PNKP-222ENST00000629088 MADDQ8WXG6 1647 aa26.1■■□□□ 1.77
PNKP-222ENST00000629088 CDK13Q14004 1512 aaKnown RBP26.1■■□□□ 1.77
PNKP-222ENST00000629088 ARHGEF40Q8TER5 1519 aa26.09■■□□□ 1.77
PNKP-222ENST00000629088 TTC37Q6PGP7 1564 aa26.07■■□□□ 1.76
PNKP-222ENST00000629088 FBXO41Q8TF61 875 aa26.07■■□□□ 1.76
PNKP-222ENST00000629088 RICTORQ6R327 1708 aa26.06■■□□□ 1.76
PNKP-222ENST00000629088 EHMT2Q96KQ7 1210 aa26.04■■□□□ 1.76
PNKP-222ENST00000629088 YEATS2Q9ULM3 1422 aa26.03■■□□□ 1.76
PNKP-222ENST00000629088 LMTK3Q96Q04 1460 aa26.03■■□□□ 1.76
PNKP-222ENST00000629088 PCF11O94913 1555 aaKnown RBP26.03■■□□□ 1.76
PNKP-222ENST00000629088 CDK11AQ9UQ88 783 aaPredicted RBP26.02■■□□□ 1.76
PNKP-222ENST00000629088 PLCH2O75038 1416 aa26■■□□□ 1.75
PNKP-222ENST00000629088 PLPPR3Q6T4P5 718 aa26■■□□□ 1.75
PNKP-222ENST00000629088 ZMYM4Q5VZL5 1548 aa25.99■■□□□ 1.75
PNKP-222ENST00000629088 ATP1B4Q9UN42 357 aaPredicted RBP25.99■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms