RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 KIF27Q86VH2 1401 aa41.73■■■■■ 4.27
CPSF1-214ENST00000622776 KIAA0586Q9BVV6 1533 aa41.64■■■■■ 4.26
CPSF1-214ENST00000622776 AEBP2Q6ZN18 517 aaPredicted RBP41.64■■■■■ 4.26
CPSF1-214ENST00000622776 CUL7Q14999 1698 aa41.6■■■■■ 4.25
CPSF1-214ENST00000622776 KIF13AQ9H1H9 1805 aa41.59■■■■■ 4.25
CPSF1-214ENST00000622776 NPM1P06748 294 aaKnown RBP eCLIP41.57■■■■■ 4.25
CPSF1-214ENST00000622776 FAM69CQ0P6D2 419 aa41.47■■■■■ 4.23
CPSF1-214ENST00000622776 CARMIL1Q5VZK9 1371 aa41.47■■■■■ 4.23
CPSF1-214ENST00000622776 ADCY10Q96PN6 1610 aa41.46■■■■■ 4.23
CPSF1-214ENST00000622776 ABCC10Q5T3U5 1492 aa41.46■■■■■ 4.23
CPSF1-214ENST00000622776 MAPKBP1O60336 1514 aa41.44■■■■■ 4.23
CPSF1-214ENST00000622776 PTPRGP23470 1445 aa41.31■■■■■ 4.2
CPSF1-214ENST00000622776 DIP2BQ9P265 1576 aa41.31■■■■■ 4.2
CPSF1-214ENST00000622776 CARMIL2Q6F5E8 1435 aa41.24■■■■■ 4.19
CPSF1-214ENST00000622776 TTBK1Q5TCY1 1321 aaPredicted RBP41.22■■■■■ 4.19
CPSF1-214ENST00000622776 TNIKQ9UKE5 1360 aa41.22■■■■■ 4.19
CPSF1-214ENST00000622776 IQGAP2Q13576 1575 aa41.18■■■■■ 4.18
CPSF1-214ENST00000622776 ABCC2Q92887 1545 aa41.08■■■■■ 4.17
CPSF1-214ENST00000622776 RAPGEF2Q9Y4G8 1499 aa41.05■■■■■ 4.16
CPSF1-214ENST00000622776 DISP1Q96F81 1524 aa41.03■■■■■ 4.16
CPSF1-214ENST00000622776 TSPOAP1O95153 1857 aa41.02■■■■■ 4.16
CPSF1-214ENST00000622776 UHRF1BP1LA0JNW5 1464 aa40.99■■■■■ 4.15
CPSF1-214ENST00000622776 KDM6BO15054 1643 aa40.99■■■■■ 4.15
CPSF1-214ENST00000622776 UACAQ9BZF9 1416 aa40.97■■■■■ 4.15
CPSF1-214ENST00000622776 ASXL2Q76L83 1435 aa40.96■■■■■ 4.15
CPSF1-214ENST00000622776 PLB1Q6P1J6 1458 aa40.95■■■■■ 4.15
CPSF1-214ENST00000622776 UGGT2Q9NYU1 1516 aa40.94■■■■■ 4.14
CPSF1-214ENST00000622776 GLI2P10070 1586 aa40.84■■■■■ 4.13
CPSF1-214ENST00000622776 KIAA0556O60303 1618 aa40.81■■■■■ 4.12
CPSF1-214ENST00000622776 KDM5BQ9UGL1 1544 aa40.8■■■■■ 4.12
CPSF1-214ENST00000622776 PPRC1Q5VV67 1664 aaKnown RBP40.72■■■■■ 4.11
CPSF1-214ENST00000622776 KDM4FA0A1W2PPD8 638 aa40.72■■■■■ 4.11
CPSF1-214ENST00000622776 EPRSP07814 1512 aaKnown RBP40.71■■■■■ 4.11
CPSF1-214ENST00000622776 ZCCHC11Q5TAX3 1644 aaKnown RBP40.67■■■■■ 4.1
CPSF1-214ENST00000622776 CTTNBP2Q8WZ74 1663 aa40.65■■■■■ 4.1
CPSF1-214ENST00000622776 GOLGA3Q08378 1498 aa40.6■■■■■ 4.09
CPSF1-214ENST00000622776 PRXQ9BXM0 1461 aa40.6■■■■■ 4.09
CPSF1-214ENST00000622776 MAP3K4Q9Y6R4 1608 aa40.58■■■■■ 4.09
CPSF1-214ENST00000622776 COL17A1Q9UMD9 1497 aaPredicted RBP40.53■■■■■ 4.08
CPSF1-214ENST00000622776 TEX14Q8IWB6 1497 aa40.52■■■■■ 4.08
CPSF1-214ENST00000622776 WDR7Q9Y4E6 1490 aa40.52■■■■■ 4.08
CPSF1-214ENST00000622776 ABCA8O94911 1581 aa40.46■■■■■ 4.07
CPSF1-214ENST00000622776 KCNH8Q96L42 1107 aa40.37■■■■■ 4.05
CPSF1-214ENST00000622776 CD109Q6YHK3 1445 aa40.32■■■■■ 4.04
CPSF1-214ENST00000622776 ADGRL1O94910 1474 aa40.32■■■■■ 4.04
CPSF1-214ENST00000622776 CSRNP3Q8WYN3 585 aa40.29■■■■■ 4.04
CPSF1-214ENST00000622776 MAGI3Q5TCQ9 1506 aa40.28■■■■■ 4.04
CPSF1-214ENST00000622776 P3H3Q8IVL6 736 aa40.28■■■■■ 4.04
CPSF1-214ENST00000622776 FAM9AQ8IZU1 332 aaPredicted RBP40.28■■■■■ 4.04
CPSF1-214ENST00000622776 CFAP43Q8NDM7 1665 aa40.25■■■■■ 4.03
CPSF1-214ENST00000622776 ARID3CA6NKF2 412 aa40.2■■■■■ 4.03
CPSF1-214ENST00000622776 ATP10BO94823 1461 aa40.16■■■■■ 4.02
CPSF1-214ENST00000622776 SAMD9Q5K651 1589 aa40.1■■■■■ 4.01
CPSF1-214ENST00000622776 EEA1Q15075 1411 aa40.04■■■■■ 4
CPSF1-214ENST00000622776 RAPGEF6Q8TEU7 1601 aa39.98■■■■□ 3.99
CPSF1-214ENST00000622776 ARAP3Q8WWN8 1544 aa39.97■■■■□ 3.99
CPSF1-214ENST00000622776 RANGAP1P46060 587 aaPredicted RBP39.94■■■■□ 3.98
CPSF1-214ENST00000622776 ABCA9Q8IUA7 1624 aa39.94■■■■□ 3.98
CPSF1-214ENST00000622776 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP39.93■■■■□ 3.98
CPSF1-214ENST00000622776 HNRNPUL2Q1KMD3 747 aaKnown RBP39.93■■■■□ 3.98
CPSF1-214ENST00000622776 PHLDB1Q86UU1 1377 aa39.9■■■■□ 3.98
CPSF1-214ENST00000622776 FHOD3Q2V2M9 1422 aa39.87■■■■□ 3.97
CPSF1-214ENST00000622776 NUP153P49790 1475 aaKnown RBP39.87■■■■□ 3.97
CPSF1-214ENST00000622776 KIF21BO75037 1637 aa39.81■■■■□ 3.96
CPSF1-214ENST00000622776 HECW2Q9P2P5 1572 aa39.8■■■■□ 3.96
CPSF1-214ENST00000622776 NEO1Q92859 1461 aa39.78■■■■□ 3.96
CPSF1-214ENST00000622776 RAPGEF3O95398 923 aa39.76■■■■□ 3.96
CPSF1-214ENST00000622776 PLEKHD1A6NEE1 506 aa39.72■■■■□ 3.95
CPSF1-214ENST00000622776 EFCAB5A4FU69 1503 aa39.68■■■■□ 3.94
CPSF1-214ENST00000622776 ILDR1Q86SU0 546 aaPredicted RBP39.63■■■■□ 3.93
CPSF1-214ENST00000622776 FRMPD1Q5SYB0 1578 aa39.59■■■■□ 3.93
CPSF1-214ENST00000622776 ADAMTSL3P82987 1691 aa39.53■■■■□ 3.92
CPSF1-214ENST00000622776 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP39.52■■■■□ 3.92
CPSF1-214ENST00000622776 DENND4BO75064 1496 aaPredicted RBP39.51■■■■□ 3.92
CPSF1-214ENST00000622776 AKNAQ7Z591 1439 aa39.51■■■■□ 3.92
CPSF1-214ENST00000622776 UBTFP17480 764 aaKnown RBP39.5■■■■□ 3.91
CPSF1-214ENST00000622776 FANCAO15360 1455 aa39.49■■■■□ 3.91
CPSF1-214ENST00000622776 ARID4BQ4LE39 1312 aaPredicted RBP39.49■■■■□ 3.91
CPSF1-214ENST00000622776 EHMT2Q96KQ7 1210 aa39.49■■■■□ 3.91
CPSF1-214ENST00000622776 PTPRMP28827 1452 aa39.49■■■■□ 3.91
CPSF1-214ENST00000622776 CDK13Q14004 1512 aaKnown RBP39.45■■■■□ 3.91
CPSF1-214ENST00000622776 TTC37Q6PGP7 1564 aa39.44■■■■□ 3.9
CPSF1-214ENST00000622776 CFAP74Q9C0B2 1584 aa39.43■■■■□ 3.9
CPSF1-214ENST00000622776 BCORL1Q5H9F3 1711 aa39.42■■■■□ 3.9
CPSF1-214ENST00000622776 RICTORQ6R327 1708 aa39.42■■■■□ 3.9
CPSF1-214ENST00000622776 CHIC1Q5VXU3 224 aa39.4■■■■□ 3.9
CPSF1-214ENST00000622776 ARHGEF40Q8TER5 1519 aa39.4■■■■□ 3.9
CPSF1-214ENST00000622776 ATP1B4Q9UN42 357 aaPredicted RBP39.36■■■■□ 3.89
CPSF1-214ENST00000622776 FMN1Q68DA7 1419 aa39.36■■■■□ 3.89
CPSF1-214ENST00000622776 MADDQ8WXG6 1647 aa39.33■■■■□ 3.89
CPSF1-214ENST00000622776 ARHGAP35Q9NRY4 1499 aa39.33■■■■□ 3.89
CPSF1-214ENST00000622776 PLCH2O75038 1416 aa39.31■■■■□ 3.88
CPSF1-214ENST00000622776 ZMYM4Q5VZL5 1548 aa39.3■■■■□ 3.88
CPSF1-214ENST00000622776 HECW1Q76N89 1606 aa39.28■■■■□ 3.88
CPSF1-214ENST00000622776 YEATS2Q9ULM3 1422 aa39.25■■■■□ 3.87
CPSF1-214ENST00000622776 CDK11AQ9UQ88 783 aaPredicted RBP39.25■■■■□ 3.87
CPSF1-214ENST00000622776 SCAPERQ9BY12 1400 aa39.24■■■■□ 3.87
CPSF1-214ENST00000622776 ZFYVE16Q7Z3T8 1539 aa39.24■■■■□ 3.87
CPSF1-214ENST00000622776 MAGI2Q86UL8 1455 aa39.23■■■■□ 3.87
CPSF1-214ENST00000622776 POGZQ7Z3K3 1410 aa39.2■■■■□ 3.87
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms