RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 CTTNBP2Q8WZ74 1663 aa32.19■■■□□ 2.74
LIME1-210ENST00000621325 FHOD3Q2V2M9 1422 aa32.16■■■□□ 2.74
LIME1-210ENST00000621325 AQRO60306 1485 aaKnown RBP eCLIP32.15■■■□□ 2.746e-6■■■■□ 25.1
LIME1-210ENST00000621325 FHAD1B1AJZ9 1412 aa32.1■■■□□ 2.73
LIME1-210ENST00000621325 EFCAB5A4FU69 1503 aa32.09■■■□□ 2.73
LIME1-210ENST00000621325 TIAM1Q13009 1591 aa32.09■■■□□ 2.73
LIME1-210ENST00000621325 WDR62O43379 1518 aa32.07■■■□□ 2.72
LIME1-210ENST00000621325 PCF11O94913 1555 aaKnown RBP32.07■■■□□ 2.72
LIME1-210ENST00000621325 PBRM1Q86U86 1689 aa32.05■■■□□ 2.72
LIME1-210ENST00000621325 MAP3K1Q13233 1512 aa32.04■■■□□ 2.72
LIME1-210ENST00000621325 RRBP1Q9P2E9 1410 aaKnown RBP32.03■■■□□ 2.72
LIME1-210ENST00000621325 ATP1B4Q9UN42 357 aaPredicted RBP32.02■■■□□ 2.72
LIME1-210ENST00000621325 ZNF608Q9ULD9 1512 aaPredicted RBP32.01■■■□□ 2.72
LIME1-210ENST00000621325 ERCC6Q03468 1493 aa32■■■□□ 2.71
LIME1-210ENST00000621325 IFT140Q96RY7 1462 aa31.99■■■□□ 2.71
LIME1-210ENST00000621325 LRRC9Q6ZRR7 1453 aa31.98■■■□□ 2.71
LIME1-210ENST00000621325 GRIN2BQ13224 1484 aa31.95■■■□□ 2.7
LIME1-210ENST00000621325 ADAMTS12P58397 1594 aa31.93■■■□□ 2.7
LIME1-210ENST00000621325 CCNB3Q8WWL7 1395 aa31.93■■■□□ 2.7
LIME1-210ENST00000621325 CASKIN1Q8WXD9 1431 aa31.93■■■□□ 2.7
LIME1-210ENST00000621325 FYCO1Q9BQS8 1478 aa31.92■■■□□ 2.7
LIME1-210ENST00000621325 SAMD9Q5K651 1589 aa31.92■■■□□ 2.7
LIME1-210ENST00000621325 CFAP43Q8NDM7 1665 aa31.91■■■□□ 2.7
LIME1-210ENST00000621325 FMN1Q68DA7 1419 aa31.88■■■□□ 2.69
LIME1-210ENST00000621325 THOC2Q8NI27 1593 aaKnown RBP31.85■■■□□ 2.69
LIME1-210ENST00000621325 SNAPC4Q5SXM2 1469 aa31.85■■■□□ 2.69
LIME1-210ENST00000621325 PHLDB1Q86UU1 1377 aa31.84■■■□□ 2.69
LIME1-210ENST00000621325 ITGAEP38570 1179 aa31.79■■■□□ 2.68
LIME1-210ENST00000621325 EIF4G3O43432 1585 aaKnown RBP31.77■■■□□ 2.68
LIME1-210ENST00000621325 MYT1Q01538 1121 aa31.77■■■□□ 2.68
LIME1-210ENST00000621325 IQGAP2Q13576 1575 aa31.75■■■□□ 2.67
LIME1-210ENST00000621325 LRRIQ1Q96JM4 1722 aa31.67■■■□□ 2.66
LIME1-210ENST00000621325 DHX57Q6P158 1386 aaKnown RBP31.66■■■□□ 2.66
LIME1-210ENST00000621325 FAM50AQ14320 339 aaKnown RBP31.64■■■□□ 2.65
LIME1-210ENST00000621325 GRIN2AQ12879 1464 aa31.61■■■□□ 2.65
LIME1-210ENST00000621325 MTUS2Q5JR59 1369 aa31.6■■■□□ 2.65
LIME1-210ENST00000621325 UGGT2Q9NYU1 1516 aa31.57■■■□□ 2.64
LIME1-210ENST00000621325 KIAA0586Q9BVV6 1533 aa31.57■■■□□ 2.64
LIME1-210ENST00000621325 MAGI1Q96QZ7 1491 aaPredicted RBP31.54■■■□□ 2.64
LIME1-210ENST00000621325 CHMP7Q8WUX9 453 aaPredicted RBP31.5■■■□□ 2.63
LIME1-210ENST00000621325 RAB3GAP2Q9H2M9 1393 aa31.49■■■□□ 2.63
LIME1-210ENST00000621325 FBLN2P98095 1184 aa31.48■■■□□ 2.63
LIME1-210ENST00000621325 SYNJ2O15056 1496 aa31.47■■■□□ 2.63
LIME1-210ENST00000621325 DISP1Q96F81 1524 aa31.47■■■□□ 2.63
LIME1-210ENST00000621325 SCAF1Q9H7N4 1312 aaKnown RBP31.47■■■□□ 2.63
LIME1-210ENST00000621325 CLSPNQ9HAW4 1339 aa31.46■■■□□ 2.63
LIME1-210ENST00000621325 FGD6Q6ZV73 1430 aa31.46■■■□□ 2.63
LIME1-210ENST00000621325 MAGI3Q5TCQ9 1506 aa31.46■■■□□ 2.63
LIME1-210ENST00000621325 NCOA2Q15596 1464 aa31.45■■■□□ 2.63
LIME1-210ENST00000621325 HECW1Q76N89 1606 aa31.44■■■□□ 2.62
LIME1-210ENST00000621325 CCDC18Q5T9S5 1454 aa31.43■■■□□ 2.62
LIME1-210ENST00000621325 KIAA0556O60303 1618 aa31.43■■■□□ 2.62
LIME1-210ENST00000621325 ARID3CA6NKF2 412 aa31.43■■■□□ 2.62
LIME1-210ENST00000621325 CEP170Q5SW79 1584 aa31.42■■■□□ 2.62
LIME1-210ENST00000621325 SETD5Q9C0A6 1442 aa31.42■■■□□ 2.62
LIME1-210ENST00000621325 EHBP1L1Q8N3D4 1523 aa31.42■■■□□ 2.62
LIME1-210ENST00000621325 EPRSP07814 1512 aaKnown RBP31.41■■■□□ 2.62
LIME1-210ENST00000621325 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.4■■■□□ 2.62
LIME1-210ENST00000621325 CDK13Q14004 1512 aaKnown RBP31.39■■■□□ 2.61
LIME1-210ENST00000621325 SUPT6HQ7KZ85 1726 aaKnown RBP31.37■■■□□ 2.61
LIME1-210ENST00000621325 ZNF316A6NFI3 1004 aaPredicted RBP31.35■■■□□ 2.61
LIME1-210ENST00000621325 MYOM3Q5VTT5 1437 aa31.35■■■□□ 2.61
LIME1-210ENST00000621325 DIEXFQ68CQ4 756 aaKnown RBP31.32■■■□□ 2.6
LIME1-210ENST00000621325 ARHGEF11O15085 1522 aa31.31■■■□□ 2.6
LIME1-210ENST00000621325 NUP160Q12769 1436 aa31.3■■■□□ 2.6
LIME1-210ENST00000621325 PTPRKQ15262 1439 aa31.26■■■□□ 2.6
LIME1-210ENST00000621325 MAPKBP1O60336 1514 aa31.24■■■□□ 2.59
LIME1-210ENST00000621325 NUP153P49790 1475 aaKnown RBP31.24■■■□□ 2.59
LIME1-210ENST00000621325 JPH4Q96JJ6 628 aa31.23■■■□□ 2.59
LIME1-210ENST00000621325 RAPGEF6Q8TEU7 1601 aa31.2■■■□□ 2.59
LIME1-210ENST00000621325 PTPN23Q9H3S7 1636 aa31.19■■■□□ 2.58
LIME1-210ENST00000621325 PLB1Q6P1J6 1458 aa31.15■■■□□ 2.58
LIME1-210ENST00000621325 CARMIL2Q6F5E8 1435 aa31.12■■■□□ 2.57
LIME1-210ENST00000621325 TCOF1Q13428 1488 aaKnown RBP31.1■■■□□ 2.57
LIME1-210ENST00000621325 HFM1A2PYH4 1435 aa31.1■■■□□ 2.57
LIME1-210ENST00000621325 NAIPQ13075 1403 aa31.04■■■□□ 2.56
LIME1-210ENST00000621325 MIA2Q96PC5 1412 aa31.03■■■□□ 2.56
LIME1-210ENST00000621325 SIN3AQ96ST3 1273 aa31.03■■■□□ 2.56
LIME1-210ENST00000621325 CHIC2Q9UKJ5 165 aa31.02■■■□□ 2.56
LIME1-210ENST00000621325 CDK11AQ9UQ88 783 aaPredicted RBP31.02■■■□□ 2.56
LIME1-210ENST00000621325 PRG4Q92954 1404 aaPredicted RBP31.01■■■□□ 2.55
LIME1-210ENST00000621325 RRP7BPQ9NSQ0 103 aa30.97■■■□□ 2.55
LIME1-210ENST00000621325 NEUROD1Q13562 356 aa30.97■■■□□ 2.55
LIME1-210ENST00000621325 CHD1O14646 1710 aa30.95■■■□□ 2.55
LIME1-210ENST00000621325 TROQ12816 1431 aaPredicted RBP30.94■■■□□ 2.54
LIME1-210ENST00000621325 ZNF644Q9H582 1327 aaPredicted RBP30.92■■■□□ 2.54
LIME1-210ENST00000621325 UACAQ9BZF9 1416 aa30.91■■■□□ 2.54
LIME1-210ENST00000621325 ABCA8O94911 1581 aa30.9■■■□□ 2.54
LIME1-210ENST00000621325 KIF14Q15058 1648 aa30.85■■■□□ 2.53
LIME1-210ENST00000621325 ATP10BO94823 1461 aa30.83■■■□□ 2.53
LIME1-210ENST00000621325 PTPRGP23470 1445 aa30.82■■■□□ 2.52
LIME1-210ENST00000621325 DAPK1P53355 1430 aa30.81■■■□□ 2.52
LIME1-210ENST00000621325 GCC2Q8IWJ2 1684 aa30.81■■■□□ 2.52
LIME1-210ENST00000621325 AKNAQ7Z591 1439 aa30.81■■■□□ 2.52
LIME1-210ENST00000621325 KDM6BO15054 1643 aa30.81■■■□□ 2.52
LIME1-210ENST00000621325 ABCC5O15440 1437 aa30.8■■■□□ 2.52
LIME1-210ENST00000621325 MIER1Q8N108 512 aa30.78■■■□□ 2.52
LIME1-210ENST00000621325 GPATCH8Q9UKJ3 1502 aaKnown RBP30.78■■■□□ 2.52
LIME1-210ENST00000621325 ADCY10Q96PN6 1610 aa30.78■■■□□ 2.52
LIME1-210ENST00000621325 CFDP1Q9UEE9 299 aaPredicted RBP30.77■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms