RNA–Protein interactions for RNA: ENST00000620466.4

ALMS1-208, Transcript of ALMS1, centrosome and basal body associated protein, humanhuman

TSL 2

Gene ALMS1, Length 6,720 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1-208ENST00000620466 ESF1Q9H501 851 aaKnown RBP11.31□□□□□ -0.6
ALMS1-208ENST00000620466 MRS2Q9HD23 443 aa11.3□□□□□ -0.6
ALMS1-208ENST00000620466 SIN3AQ96ST3 1273 aa11.28□□□□□ -0.6
ALMS1-208ENST00000620466 CCNB3Q8WWL7 1395 aa11.28□□□□□ -0.6
ALMS1-208ENST00000620466 EIF4G2P78344 907 aaKnown RBP eCLIP11.27□□□□□ -0.6
ALMS1-208ENST00000620466 SUPT16HQ9Y5B9 1047 aaKnown RBP11.27□□□□□ -0.61
ALMS1-208ENST00000620466 STAG3Q9UJ98 1225 aa11.26□□□□□ -0.61
ALMS1-208ENST00000620466 SALL2Q9Y467 1007 aaPredicted RBP11.26□□□□□ -0.61
ALMS1-208ENST00000620466 TMC1Q8TDI8 760 aa11.25□□□□□ -0.61
ALMS1-208ENST00000620466 CCDC136Q96JN2 1154 aa11.25□□□□□ -0.61
ALMS1-208ENST00000620466 CHGAP10645 457 aaKnown RBP11.23□□□□□ -0.61
ALMS1-208ENST00000620466 KANK4Q5T7N3 995 aaPredicted RBP11.22□□□□□ -0.61
ALMS1-208ENST00000620466 KDM2AQ9Y2K7 1162 aa11.22□□□□□ -0.61
ALMS1-208ENST00000620466 NBR1Q14596 966 aa11.21□□□□□ -0.62
ALMS1-208ENST00000620466 SMARCA4P51532 1647 aa11.21□□□□□ -0.62
ALMS1-208ENST00000620466 CUX2O14529 1486 aa11.21□□□□□ -0.62
ALMS1-208ENST00000620466 SMARCA2P51531 1590 aa11.2□□□□□ -0.62
ALMS1-208ENST00000620466 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.2□□□□□ -0.62
ALMS1-208ENST00000620466 ANP32EQ9BTT0 268 aa11.19□□□□□ -0.62
ALMS1-208ENST00000620466 FHAD1B1AJZ9 1412 aa11.19□□□□□ -0.62
ALMS1-208ENST00000620466 SETD5Q9C0A6 1442 aa11.19□□□□□ -0.62
ALMS1-208ENST00000620466 CARMIL1Q5VZK9 1371 aa11.18□□□□□ -0.62
ALMS1-208ENST00000620466 RUSC2Q8N2Y8 1516 aa11.18□□□□□ -0.62
ALMS1-208ENST00000620466 TSPY4P0CV99 314 aa11.16□□□□□ -0.62
ALMS1-208ENST00000620466 TSPY10P0CW01 314 aa11.16□□□□□ -0.62
ALMS1-208ENST00000620466 RAPGEF2Q9Y4G8 1499 aa11.15□□□□□ -0.62
ALMS1-208ENST00000620466 ARHGAP35Q9NRY4 1499 aa11.15□□□□□ -0.62
ALMS1-208ENST00000620466 NPM1P06748 294 aaKnown RBP eCLIP11.14□□□□□ -0.63
ALMS1-208ENST00000620466 RAB3GAP2Q9H2M9 1393 aa11.14□□□□□ -0.63
ALMS1-208ENST00000620466 CHMP7Q8WUX9 453 aaPredicted RBP11.13□□□□□ -0.63
ALMS1-208ENST00000620466 WDR43Q15061 677 aaKnown RBP eCLIP11.13□□□□□ -0.63
ALMS1-208ENST00000620466 EIF4G1Q04637 1599 aaKnown RBP11.12□□□□□ -0.63
ALMS1-208ENST00000620466 SENP3-EIF4A1A0A087X0R7 540 aa11.12□□□□□ -0.63
ALMS1-208ENST00000620466 HSP90AA1P07900 732 aaKnown RBP11.11□□□□□ -0.63
ALMS1-208ENST00000620466 TIMELESSQ9UNS1 1208 aa11.1□□□□□ -0.63
ALMS1-208ENST00000620466 CCER2I3L3R5 266 aa11.1□□□□□ -0.63
ALMS1-208ENST00000620466 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.1□□□□□ -0.63
ALMS1-208ENST00000620466 ANP32BQ92688 251 aaKnown RBP11.09□□□□□ -0.63
ALMS1-208ENST00000620466 PPP4R2Q9NY27 417 aa11.09□□□□□ -0.63
ALMS1-208ENST00000620466 CFDP1Q9UEE9 299 aaPredicted RBP11.08□□□□□ -0.64
ALMS1-208ENST00000620466 DHX57Q6P158 1386 aaKnown RBP11.07□□□□□ -0.64
ALMS1-208ENST00000620466 CARD11Q9BXL7 1154 aa11.06□□□□□ -0.64
ALMS1-208ENST00000620466 HSPA5P11021 654 aaKnown RBP11.06□□□□□ -0.64
ALMS1-208ENST00000620466 UPF2Q9HAU5 1272 aaKnown RBP11.06□□□□□ -0.64
ALMS1-208ENST00000620466 A0A0G2JS52 829 aa11.06□□□□□ -0.64
ALMS1-208ENST00000620466 PLEKHD1A6NEE1 506 aa11.06□□□□□ -0.64
ALMS1-208ENST00000620466 ZBTB7CA1YPR0 619 aa11.05□□□□□ -0.64
ALMS1-208ENST00000620466 ATAD2BQ9ULI0 1458 aa11.05□□□□□ -0.64
ALMS1-208ENST00000620466 RGL3Q3MIN7 710 aa11.04□□□□□ -0.64
ALMS1-208ENST00000620466 B4GALNT3Q6L9W6 998 aa11.02□□□□□ -0.65
ALMS1-208ENST00000620466 RBM19Q9Y4C8 960 aaKnown RBP11.01□□□□□ -0.65
ALMS1-208ENST00000620466 DDRGK1Q96HY6 314 aa11.01□□□□□ -0.65
ALMS1-208ENST00000620466 TSHZ2Q9NRE2 1034 aa11□□□□□ -0.65
ALMS1-208ENST00000620466 FHOD3Q2V2M9 1422 aa11□□□□□ -0.65
ALMS1-208ENST00000620466 FMN1Q68DA7 1419 aa10.99□□□□□ -0.65
ALMS1-208ENST00000620466 PLEKHG5O94827 1062 aa10.99□□□□□ -0.65
ALMS1-208ENST00000620466 FOXD1Q16676 465 aa10.99□□□□□ -0.65
ALMS1-208ENST00000620466 PPP1R15AO75807 674 aaPredicted RBP10.99□□□□□ -0.65
ALMS1-208ENST00000620466 SENP3Q9H4L4 574 aaPredicted RBP10.99□□□□□ -0.65
ALMS1-208ENST00000620466 KCNH8Q96L42 1107 aa10.99□□□□□ -0.65
ALMS1-208ENST00000620466 NOP58Q9Y2X3 529 aaKnown RBP10.98□□□□□ -0.65
ALMS1-208ENST00000620466 KIF21BO75037 1637 aa10.98□□□□□ -0.65
ALMS1-208ENST00000620466 EIF5BO60841 1220 aaKnown RBP10.98□□□□□ -0.65
ALMS1-208ENST00000620466 C14orf37Q86TY3 774 aa10.97□□□□□ -0.65
ALMS1-208ENST00000620466 KNSTRNQ9Y448 316 aa10.96□□□□□ -0.66
ALMS1-208ENST00000620466 CC2D1BQ5T0F9 858 aaKnown RBP10.95□□□□□ -0.66
ALMS1-208ENST00000620466 MPHOSPH9Q99550 1183 aa10.95□□□□□ -0.66
ALMS1-208ENST00000620466 ARXQ96QS3 562 aa10.94□□□□□ -0.66
ALMS1-208ENST00000620466 MYH16Q9H6N6 1097 aa10.94□□□□□ -0.66
ALMS1-208ENST00000620466 DCAF11Q8TEB1 546 aa10.93□□□□□ -0.66
ALMS1-208ENST00000620466 LAS1LQ9Y4W2 734 aaKnown RBP10.92□□□□□ -0.66
ALMS1-208ENST00000620466 TDRD9Q8NDG6 1382 aaKnown RBP10.92□□□□□ -0.66
ALMS1-208ENST00000620466 CDCA8Q53HL2 280 aa10.92□□□□□ -0.66
ALMS1-208ENST00000620466 CADPSQ9ULU8 1353 aa10.92□□□□□ -0.66
ALMS1-208ENST00000620466 CDK11BP21127 795 aaKnown RBP10.91□□□□□ -0.66
ALMS1-208ENST00000620466 SYNJ1O43426 1573 aa10.91□□□□□ -0.66
ALMS1-208ENST00000620466 ERCC6Q03468 1493 aa10.9□□□□□ -0.66
ALMS1-208ENST00000620466 PKD2Q13563 968 aa10.9□□□□□ -0.66
ALMS1-208ENST00000620466 BECN1Q14457 450 aa10.9□□□□□ -0.66
ALMS1-208ENST00000620466 ERICH6BQ5W0A0 696 aa10.89□□□□□ -0.67
ALMS1-208ENST00000620466 PPM1GO15355 546 aaPredicted RBP10.88□□□□□ -0.67
ALMS1-208ENST00000620466 HAP1P54257 671 aaPredicted RBP10.88□□□□□ -0.67
ALMS1-208ENST00000620466 TMF1P82094 1093 aa10.87□□□□□ -0.67
ALMS1-208ENST00000620466 L3MBTL2Q969R5 705 aa10.87□□□□□ -0.67
ALMS1-208ENST00000620466 CCDC18Q5T9S5 1454 aa10.87□□□□□ -0.67
ALMS1-208ENST00000620466 ARID4BQ4LE39 1312 aaPredicted RBP10.86□□□□□ -0.67
ALMS1-208ENST00000620466 PDS5BQ9NTI5 1447 aa10.86□□□□□ -0.67
ALMS1-208ENST00000620466 RGS3P49796 1198 aa10.86□□□□□ -0.67
ALMS1-208ENST00000620466 CFAP53Q96M91 514 aa10.85□□□□□ -0.67
ALMS1-208ENST00000620466 KTN1Q86UP2 1357 aaKnown RBP10.85□□□□□ -0.67
ALMS1-208ENST00000620466 NEUROD2Q15784 382 aa10.84□□□□□ -0.67
ALMS1-208ENST00000620466 ROCK2O75116 1388 aaKnown RBP10.84□□□□□ -0.67
ALMS1-208ENST00000620466 DEKP35659 375 aaKnown RBP10.84□□□□□ -0.67
ALMS1-208ENST00000620466 FANCD2Q9BXW9 1451 aa10.84□□□□□ -0.67
ALMS1-208ENST00000620466 ERICH3Q5RHP9 1530 aa10.84□□□□□ -0.67
ALMS1-208ENST00000620466 FGD5Q6ZNL6 1462 aa10.83□□□□□ -0.68
ALMS1-208ENST00000620466 ARAP1Q96P48 1450 aa10.83□□□□□ -0.68
ALMS1-208ENST00000620466 ANKRD30AQ9BXX3 1397 aa10.82□□□□□ -0.68
ALMS1-208ENST00000620466 IGF1RP08069 1367 aa10.82□□□□□ -0.68
ALMS1-208ENST00000620466 LRRC9Q6ZRR7 1453 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms