RNA–Protein interactions for RNA: ENST00000618939.4

CNOT3-210, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 5

Gene CNOT3, Length 4,516 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-210ENST00000618939 FAM9BQ8IZU0 186 aa19.07■□□□□ 0.64
CNOT3-210ENST00000618939 EIF4G2P78344 907 aaKnown RBP eCLIP19.04■□□□□ 0.64
CNOT3-210ENST00000618939 RTL5Q5HYW3 569 aaPredicted RBP19.01■□□□□ 0.63
CNOT3-210ENST00000618939 CHMP7Q8WUX9 453 aaPredicted RBP19■□□□□ 0.63
CNOT3-210ENST00000618939 MRS2Q9HD23 443 aa18.98■□□□□ 0.63
CNOT3-210ENST00000618939 SETD5Q9C0A6 1442 aa18.98■□□□□ 0.63
CNOT3-210ENST00000618939 TSPY4P0CV99 314 aa18.97■□□□□ 0.63
CNOT3-210ENST00000618939 TSPY10P0CW01 314 aa18.97■□□□□ 0.63
CNOT3-210ENST00000618939 TIMELESSQ9UNS1 1208 aa18.94■□□□□ 0.62
CNOT3-210ENST00000618939 RAB3GAP2Q9H2M9 1393 aa18.93■□□□□ 0.62
CNOT3-210ENST00000618939 CADPSQ9ULU8 1353 aa18.91■□□□□ 0.62
CNOT3-210ENST00000618939 ARHGAP35Q9NRY4 1499 aa18.9■□□□□ 0.62
CNOT3-210ENST00000618939 TMC1Q8TDI8 760 aa18.89■□□□□ 0.61
CNOT3-210ENST00000618939 KDM2AQ9Y2K7 1162 aa18.88■□□□□ 0.61
CNOT3-210ENST00000618939 IRX6P78412 446 aaPredicted RBP18.86■□□□□ 0.61
CNOT3-210ENST00000618939 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.86■□□□□ 0.613e-9■■■□□ 16.4
CNOT3-210ENST00000618939 CFDP1Q9UEE9 299 aaPredicted RBP18.86■□□□□ 0.61
CNOT3-210ENST00000618939 DHX57Q6P158 1386 aaKnown RBP18.85■□□□□ 0.61
CNOT3-210ENST00000618939 PLEKHD1A6NEE1 506 aa18.84■□□□□ 0.61
CNOT3-210ENST00000618939 SUPT16HQ9Y5B9 1047 aaKnown RBP18.84■□□□□ 0.61
CNOT3-210ENST00000618939 ANP32AP39687 249 aaKnown RBP18.81■□□□□ 0.6
CNOT3-210ENST00000618939 EIF4G1Q04637 1599 aaKnown RBP18.81■□□□□ 0.6
CNOT3-210ENST00000618939 FMN1Q68DA7 1419 aa18.81■□□□□ 0.6
CNOT3-210ENST00000618939 TDRD9Q8NDG6 1382 aaKnown RBP18.81■□□□□ 0.6
CNOT3-210ENST00000618939 SALL2Q9Y467 1007 aaPredicted RBP18.8■□□□□ 0.6
CNOT3-210ENST00000618939 FHOD3Q2V2M9 1422 aa18.78■□□□□ 0.6
CNOT3-210ENST00000618939 CCDC136Q96JN2 1154 aa18.76■□□□□ 0.59
CNOT3-210ENST00000618939 KIF21BO75037 1637 aa18.75■□□□□ 0.59
CNOT3-210ENST00000618939 SYNJ1O43426 1573 aa18.74■□□□□ 0.59
CNOT3-210ENST00000618939 CCER2I3L3R5 266 aa18.74■□□□□ 0.59
CNOT3-210ENST00000618939 CANXP27824 592 aaKnown RBP18.73■□□□□ 0.59
CNOT3-210ENST00000618939 PPP1R15AO75807 674 aaPredicted RBP18.72■□□□□ 0.59
CNOT3-210ENST00000618939 PDS5BQ9NTI5 1447 aa18.72■□□□□ 0.59
CNOT3-210ENST00000618939 IGF1RP08069 1367 aa18.7■□□□□ 0.58
CNOT3-210ENST00000618939 NPM2Q86SE8 214 aaKnown RBP18.7■□□□□ 0.58
CNOT3-210ENST00000618939 NCAPD3P42695 1498 aa18.7■□□□□ 0.58
CNOT3-210ENST00000618939 CHGAP10645 457 aaKnown RBP18.68■□□□□ 0.58
CNOT3-210ENST00000618939 CARD11Q9BXL7 1154 aa18.66■□□□□ 0.58
CNOT3-210ENST00000618939 RGL3Q3MIN7 710 aa18.66■□□□□ 0.58
CNOT3-210ENST00000618939 FANCD2Q9BXW9 1451 aa18.66■□□□□ 0.58
CNOT3-210ENST00000618939 HSPA5P11021 654 aaKnown RBP18.66■□□□□ 0.58
CNOT3-210ENST00000618939 KCNH8Q96L42 1107 aa18.64■□□□□ 0.57
CNOT3-210ENST00000618939 FGD5Q6ZNL6 1462 aa18.63■□□□□ 0.57
CNOT3-210ENST00000618939 FOXD1Q16676 465 aa18.61■□□□□ 0.57
CNOT3-210ENST00000618939 ERICH3Q5RHP9 1530 aa18.61■□□□□ 0.57
CNOT3-210ENST00000618939 ERCC6Q03468 1493 aa18.6■□□□□ 0.57
CNOT3-210ENST00000618939 MPHOSPH9Q99550 1183 aa18.6■□□□□ 0.57
CNOT3-210ENST00000618939 WDR43Q15061 677 aaKnown RBP eCLIP18.6■□□□□ 0.57
CNOT3-210ENST00000618939 SENP3-EIF4A1A0A087X0R7 540 aa18.59■□□□□ 0.57
CNOT3-210ENST00000618939 ARAP1Q96P48 1450 aa18.59■□□□□ 0.57
CNOT3-210ENST00000618939 NPM1P06748 294 aaKnown RBP eCLIP18.57■□□□□ 0.56
CNOT3-210ENST00000618939 PRXQ9BXM0 1461 aa18.56■□□□□ 0.56
CNOT3-210ENST00000618939 PPP4R2Q9NY27 417 aa18.55■□□□□ 0.56
CNOT3-210ENST00000618939 NEFMP07197 916 aa18.54■□□□□ 0.56
CNOT3-210ENST00000618939 TOP2BQ02880 1626 aa18.54■□□□□ 0.56
CNOT3-210ENST00000618939 CFTRP13569 1480 aa18.54■□□□□ 0.56
CNOT3-210ENST00000618939 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.52■□□□□ 0.56
CNOT3-210ENST00000618939 PHLDB1Q86UU1 1377 aa18.51■□□□□ 0.55
CNOT3-210ENST00000618939 PKD2Q13563 968 aa18.51■□□□□ 0.55
CNOT3-210ENST00000618939 ZBTB47Q9UFB7 747 aaPredicted RBP18.51■□□□□ 0.55
CNOT3-210ENST00000618939 ANP32EQ9BTT0 268 aa18.51■□□□□ 0.55
CNOT3-210ENST00000618939 L3MBTL2Q969R5 705 aa18.51■□□□□ 0.55
CNOT3-210ENST00000618939 RAD54L2Q9Y4B4 1467 aa18.51■□□□□ 0.55
CNOT3-210ENST00000618939 RRBP1Q9P2E9 1410 aaKnown RBP18.5■□□□□ 0.55
CNOT3-210ENST00000618939 DCAF11Q8TEB1 546 aa18.49■□□□□ 0.55
CNOT3-210ENST00000618939 LRRC9Q6ZRR7 1453 aa18.49■□□□□ 0.55
CNOT3-210ENST00000618939 CCDC18Q5T9S5 1454 aa18.47■□□□□ 0.55
CNOT3-210ENST00000618939 BICRAQ9NZM4 1560 aa18.46■□□□□ 0.55
CNOT3-210ENST00000618939 CARMIL2Q6F5E8 1435 aa18.46■□□□□ 0.55
CNOT3-210ENST00000618939 CUX1P39880 1505 aa18.45■□□□□ 0.54
CNOT3-210ENST00000618939 NBR1Q14596 966 aa18.45■□□□□ 0.54
CNOT3-210ENST00000618939 B4GALNT3Q6L9W6 998 aa18.44■□□□□ 0.54
CNOT3-210ENST00000618939 KNSTRNQ9Y448 316 aa18.43■□□□□ 0.54
CNOT3-210ENST00000618939 HMGXB3Q12766 1538 aa18.43■□□□□ 0.54
CNOT3-210ENST00000618939 CDCA8Q53HL2 280 aa18.43■□□□□ 0.54
CNOT3-210ENST00000618939 FGD6Q6ZV73 1430 aa18.43■□□□□ 0.54
CNOT3-210ENST00000618939 STAG3Q9UJ98 1225 aa18.42■□□□□ 0.54
CNOT3-210ENST00000618939 ANKRD30AQ9BXX3 1397 aa18.41■□□□□ 0.54
CNOT3-210ENST00000618939 GAPVD1Q14C86 1478 aa18.41■□□□□ 0.54
CNOT3-210ENST00000618939 NUP155O75694 1391 aa18.4■□□□□ 0.54
CNOT3-210ENST00000618939 TSHZ2Q9NRE2 1034 aa18.39■□□□□ 0.54
CNOT3-210ENST00000618939 BCL11AQ9H165 835 aa18.39■□□□□ 0.53
CNOT3-210ENST00000618939 RBM19Q9Y4C8 960 aaKnown RBP18.38■□□□□ 0.53
CNOT3-210ENST00000618939 CASKIN1Q8WXD9 1431 aa18.38■□□□□ 0.53
CNOT3-210ENST00000618939 CC2D1BQ5T0F9 858 aaKnown RBP18.36■□□□□ 0.53
CNOT3-210ENST00000618939 MYOM3Q5VTT5 1437 aa18.35■□□□□ 0.53
CNOT3-210ENST00000618939 ERICH6BQ5W0A0 696 aa18.34■□□□□ 0.53
CNOT3-210ENST00000618939 UPF2Q9HAU5 1272 aaKnown RBP18.34■□□□□ 0.53
CNOT3-210ENST00000618939 PEG3Q9GZU2 1588 aa18.34■□□□□ 0.53
CNOT3-210ENST00000618939 TMF1P82094 1093 aa18.33■□□□□ 0.53
CNOT3-210ENST00000618939 UACAQ9BZF9 1416 aa18.33■□□□□ 0.52
CNOT3-210ENST00000618939 ESF1Q9H501 851 aaKnown RBP18.32■□□□□ 0.52
CNOT3-210ENST00000618939 FYCO1Q9BQS8 1478 aa18.31■□□□□ 0.52
CNOT3-210ENST00000618939 JPH4Q96JJ6 628 aa18.31■□□□□ 0.52
CNOT3-210ENST00000618939 NCOA2Q15596 1464 aa18.28■□□□□ 0.52
CNOT3-210ENST00000618939 TIAM1Q13009 1591 aa18.28■□□□□ 0.52
CNOT3-210ENST00000618939 ROCK2O75116 1388 aaKnown RBP18.27■□□□□ 0.52
CNOT3-210ENST00000618939 HNRNPMP52272 730 aaKnown RBP eCLIP18.27■□□□□ 0.525e-9■■■■■ 30.5
CNOT3-210ENST00000618939 PRKRIP1Q9H875 184 aaPredicted RBP18.26■□□□□ 0.51
CNOT3-210ENST00000618939 KTN1Q86UP2 1357 aaKnown RBP18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms