RNA–Protein interactions for RNA: ENST00000618500.4

SNCA-213, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,022 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-213ENST00000618500 ABCC10Q5T3U5 1492 aa8.78□□□□□ -1
SNCA-213ENST00000618500 TOP2BQ02880 1626 aa8.77□□□□□ -1
SNCA-213ENST00000618500 CHMP7Q8WUX9 453 aaPredicted RBP8.77□□□□□ -1.01
SNCA-213ENST00000618500 FHAD1B1AJZ9 1412 aa8.77□□□□□ -1.01
SNCA-213ENST00000618500 GLI2P10070 1586 aa8.75□□□□□ -1.01
SNCA-213ENST00000618500 KDM6BO15054 1643 aa8.74□□□□□ -1.01
SNCA-213ENST00000618500 ADCY10Q96PN6 1610 aa8.74□□□□□ -1.01
SNCA-213ENST00000618500 FBLN2P98095 1184 aa8.72□□□□□ -1.01
SNCA-213ENST00000618500 PPRC1Q5VV67 1664 aaKnown RBP8.72□□□□□ -1.01
SNCA-213ENST00000618500 CUL7Q14999 1698 aa8.69□□□□□ -1.02
SNCA-213ENST00000618500 WRNQ14191 1432 aaPredicted RBP eCLIP8.69□□□□□ -1.02
SNCA-213ENST00000618500 MAP3K4Q9Y6R4 1608 aa8.66□□□□□ -1.02
SNCA-213ENST00000618500 PRG4Q92954 1404 aaPredicted RBP8.65□□□□□ -1.02
SNCA-213ENST00000618500 UHRF1BP1LA0JNW5 1464 aa8.65□□□□□ -1.03
SNCA-213ENST00000618500 KIAA0586Q9BVV6 1533 aa8.62□□□□□ -1.03
SNCA-213ENST00000618500 MSH5O43196 834 aa8.61□□□□□ -1.03
SNCA-213ENST00000618500 KDM4FA0A1W2PPD8 638 aa8.59□□□□□ -1.03
SNCA-213ENST00000618500 HECW2Q9P2P5 1572 aa8.59□□□□□ -1.03
SNCA-213ENST00000618500 PLB1Q6P1J6 1458 aa8.59□□□□□ -1.03
SNCA-213ENST00000618500 ABCC2Q92887 1545 aa8.59□□□□□ -1.03
SNCA-213ENST00000618500 TSPOAP1O95153 1857 aa8.59□□□□□ -1.03
SNCA-213ENST00000618500 ADGRL1O94910 1474 aa8.58□□□□□ -1.04
SNCA-213ENST00000618500 TEX14Q8IWB6 1497 aa8.57□□□□□ -1.04
SNCA-213ENST00000618500 CFAP43Q8NDM7 1665 aa8.56□□□□□ -1.04
SNCA-213ENST00000618500 JPH4Q96JJ6 628 aa8.54□□□□□ -1.04
SNCA-213ENST00000618500 KDM5BQ9UGL1 1544 aa8.54□□□□□ -1.04
SNCA-213ENST00000618500 ILDR1Q86SU0 546 aaPredicted RBP8.54□□□□□ -1.04
SNCA-213ENST00000618500 ZCCHC11Q5TAX3 1644 aaKnown RBP8.53□□□□□ -1.04
SNCA-213ENST00000618500 FAM69CQ0P6D2 419 aa8.53□□□□□ -1.04
SNCA-213ENST00000618500 IQGAP2Q13576 1575 aa8.52□□□□□ -1.05
SNCA-213ENST00000618500 EPRSP07814 1512 aaKnown RBP8.52□□□□□ -1.05
SNCA-213ENST00000618500 UGGT2Q9NYU1 1516 aa8.51□□□□□ -1.05
SNCA-213ENST00000618500 NPM1P06748 294 aaKnown RBP eCLIP8.51□□□□□ -1.05
SNCA-213ENST00000618500 MAGI3Q5TCQ9 1506 aa8.51□□□□□ -1.05
SNCA-213ENST00000618500 ASXL2Q76L83 1435 aa8.5□□□□□ -1.05
SNCA-213ENST00000618500 TNIKQ9UKE5 1360 aa8.5□□□□□ -1.05
SNCA-213ENST00000618500 ADAMTSL3P82987 1691 aa8.49□□□□□ -1.05
SNCA-213ENST00000618500 CARMIL2Q6F5E8 1435 aa8.49□□□□□ -1.05
SNCA-213ENST00000618500 KIAA0556O60303 1618 aa8.48□□□□□ -1.05
SNCA-213ENST00000618500 DISP1Q96F81 1524 aa8.46□□□□□ -1.05
SNCA-213ENST00000618500 UACAQ9BZF9 1416 aa8.46□□□□□ -1.05
SNCA-213ENST00000618500 CTTNBP2Q8WZ74 1663 aa8.46□□□□□ -1.06
SNCA-213ENST00000618500 PTPRGP23470 1445 aa8.46□□□□□ -1.06
SNCA-213ENST00000618500 KIF27Q86VH2 1401 aa8.45□□□□□ -1.06
SNCA-213ENST00000618500 ARAP3Q8WWN8 1544 aa8.45□□□□□ -1.06
SNCA-213ENST00000618500 COL17A1Q9UMD9 1497 aaPredicted RBP8.44□□□□□ -1.06
SNCA-213ENST00000618500 IGF1RP08069 1367 aa8.44□□□□□ -1.06
SNCA-213ENST00000618500 WDR7Q9Y4E6 1490 aa8.44□□□□□ -1.06
SNCA-213ENST00000618500 ABCA8O94911 1581 aa8.43□□□□□ -1.06
SNCA-213ENST00000618500 KIF21BO75037 1637 aa8.43□□□□□ -1.06
SNCA-213ENST00000618500 BCORL1Q5H9F3 1711 aa8.42□□□□□ -1.06
SNCA-213ENST00000618500 PHLDB1Q86UU1 1377 aa8.42□□□□□ -1.06
SNCA-213ENST00000618500 ABCA9Q8IUA7 1624 aa8.41□□□□□ -1.06
SNCA-213ENST00000618500 FBXO41Q8TF61 875 aa8.4□□□□□ -1.06
SNCA-213ENST00000618500 PCF11O94913 1555 aaKnown RBP8.38□□□□□ -1.07
SNCA-213ENST00000618500 CFAP74Q9C0B2 1584 aa8.38□□□□□ -1.07
SNCA-213ENST00000618500 FRMPD1Q5SYB0 1578 aa8.37□□□□□ -1.07
SNCA-213ENST00000618500 GOLGA3Q08378 1498 aa8.37□□□□□ -1.07
SNCA-213ENST00000618500 ARHGEF40Q8TER5 1519 aa8.36□□□□□ -1.07
SNCA-213ENST00000618500 CARMIL1Q5VZK9 1371 aa8.35□□□□□ -1.07
SNCA-213ENST00000618500 NEO1Q92859 1461 aa8.35□□□□□ -1.07
SNCA-213ENST00000618500 ZMYM4Q5VZL5 1548 aa8.34□□□□□ -1.07
SNCA-213ENST00000618500 PTPRMP28827 1452 aa8.34□□□□□ -1.07
SNCA-213ENST00000618500 RAPGEF2Q9Y4G8 1499 aa8.34□□□□□ -1.07
SNCA-213ENST00000618500 RICTORQ6R327 1708 aa8.33□□□□□ -1.08
SNCA-213ENST00000618500 LMTK3Q96Q04 1460 aa8.33□□□□□ -1.08
SNCA-213ENST00000618500 MADDQ8WXG6 1647 aa8.32□□□□□ -1.08
SNCA-213ENST00000618500 CD109Q6YHK3 1445 aa8.32□□□□□ -1.08
SNCA-213ENST00000618500 TTC37Q6PGP7 1564 aa8.32□□□□□ -1.08
SNCA-213ENST00000618500 SAMD9Q5K651 1589 aa8.3□□□□□ -1.08
SNCA-213ENST00000618500 PREX1Q8TCU6 1659 aa8.3□□□□□ -1.08
SNCA-213ENST00000618500 RIMS1Q86UR5 1692 aaKnown RBP8.29□□□□□ -1.08
SNCA-213ENST00000618500 IQSEC2Q5JU85 1478 aa8.29□□□□□ -1.08
SNCA-213ENST00000618500 EFCAB5A4FU69 1503 aa8.27□□□□□ -1.09
SNCA-213ENST00000618500 FER1L4A9Z1Z3 1794 aa8.27□□□□□ -1.09
SNCA-213ENST00000618500 MAGI2Q86UL8 1455 aa8.26□□□□□ -1.09
SNCA-213ENST00000618500 RAPGEF6Q8TEU7 1601 aa8.26□□□□□ -1.09
SNCA-213ENST00000618500 REREQ9P2R6 1566 aa8.25□□□□□ -1.09
SNCA-213ENST00000618500 FHOD3Q2V2M9 1422 aa8.25□□□□□ -1.09
SNCA-213ENST00000618500 FANCAO15360 1455 aa8.24□□□□□ -1.09
SNCA-213ENST00000618500 ARHGEF12Q9NZN5 1544 aa8.24□□□□□ -1.09
SNCA-213ENST00000618500 SIGLEC1Q9BZZ2 1709 aa8.23□□□□□ -1.09
SNCA-213ENST00000618500 SPATA31D1Q6ZQQ2 1576 aa8.22□□□□□ -1.09
SNCA-213ENST00000618500 PRXQ9BXM0 1461 aa8.22□□□□□ -1.09
SNCA-213ENST00000618500 ATP10BO94823 1461 aa8.22□□□□□ -1.09
SNCA-213ENST00000618500 STRCQ7RTU9 1775 aa8.21□□□□□ -1.1
SNCA-213ENST00000618500 ZFYVE16Q7Z3T8 1539 aa8.21□□□□□ -1.1
SNCA-213ENST00000618500 POGZQ7Z3K3 1410 aa8.2□□□□□ -1.1
SNCA-213ENST00000618500 AKNAQ7Z591 1439 aa8.19□□□□□ -1.1
SNCA-213ENST00000618500 MROH2AA6NES4 1674 aa8.18□□□□□ -1.1
SNCA-213ENST00000618500 DENND4BO75064 1496 aaPredicted RBP8.18□□□□□ -1.1
SNCA-213ENST00000618500 PTPRTO14522 1441 aa8.17□□□□□ -1.1
SNCA-213ENST00000618500 PIAS4Q8N2W9 510 aaPredicted RBP8.16□□□□□ -1.1
SNCA-213ENST00000618500 KDM5CP41229 1560 aa8.16□□□□□ -1.1
SNCA-213ENST00000618500 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.15□□□□□ -1.1
SNCA-213ENST00000618500 MYO5CQ9NQX4 1742 aa8.15□□□□□ -1.1
SNCA-213ENST00000618500 ZNF142P52746 1687 aaPredicted RBP8.15□□□□□ -1.1
SNCA-213ENST00000618500 HECW1Q76N89 1606 aa8.15□□□□□ -1.1
SNCA-213ENST00000618500 SOCS7O14512 581 aa8.14□□□□□ -1.11
SNCA-213ENST00000618500 NUP153P49790 1475 aaKnown RBP8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms