RNA–Protein interactions for RNA: ENST00000615843.4

SPAST-203, Transcript of spastin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SPAST, Length 5,212 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-203ENST00000615843 CEP162Q5TB80 1403 aa24.98■■□□□ 1.59
SPAST-203ENST00000615843 LAS1LQ9Y4W2 734 aaKnown RBP24.94■■□□□ 1.58
SPAST-203ENST00000615843 SCRIBQ14160 1630 aa24.91■■□□□ 1.58
SPAST-203ENST00000615843 DEKP35659 375 aaKnown RBP24.9■■□□□ 1.58
SPAST-203ENST00000615843 RBM19Q9Y4C8 960 aaKnown RBP24.9■■□□□ 1.58
SPAST-203ENST00000615843 KDM2AQ9Y2K7 1162 aa24.85■■□□□ 1.57
SPAST-203ENST00000615843 NAP1L5Q96NT1 182 aaPredicted RBP24.82■■□□□ 1.56
SPAST-203ENST00000615843 GOLGA3Q08378 1498 aa24.82■■□□□ 1.56
SPAST-203ENST00000615843 MTUS2Q5JR59 1369 aa24.81■■□□□ 1.56
SPAST-203ENST00000615843 GOLGA6L22H0YM25 854 aa24.79■■□□□ 1.56
SPAST-203ENST00000615843 SENP3-EIF4A1A0A087X0R7 540 aa24.79■■□□□ 1.56
SPAST-203ENST00000615843 B4GALNT3Q6L9W6 998 aa24.79■■□□□ 1.56
SPAST-203ENST00000615843 EEA1Q15075 1411 aa24.78■■□□□ 1.56
SPAST-203ENST00000615843 TNNT2P45379 298 aaPredicted RBP24.76■■□□□ 1.55
SPAST-203ENST00000615843 CHGAP10645 457 aaKnown RBP24.75■■□□□ 1.55
SPAST-203ENST00000615843 RRP7BPQ9NSQ0 103 aa24.72■■□□□ 1.55
SPAST-203ENST00000615843 TNIKQ9UKE5 1360 aa24.72■■□□□ 1.55
SPAST-203ENST00000615843 MYH16Q9H6N6 1097 aa24.71■■□□□ 1.55
SPAST-203ENST00000615843 TSHZ2Q9NRE2 1034 aa24.71■■□□□ 1.55
SPAST-203ENST00000615843 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.68■■□□□ 1.54
SPAST-203ENST00000615843 NCLP19338 710 aaKnown RBP24.67■■□□□ 1.54
SPAST-203ENST00000615843 SIN3AQ96ST3 1273 aa24.65■■□□□ 1.54
SPAST-203ENST00000615843 PTMAP06454 111 aaKnown RBP24.63■■□□□ 1.53
SPAST-203ENST00000615843 CCER2I3L3R5 266 aa24.63■■□□□ 1.53
SPAST-203ENST00000615843 RGS3P49796 1198 aa24.62■■□□□ 1.53
SPAST-203ENST00000615843 TSPY4P0CV99 314 aa24.61■■□□□ 1.53
SPAST-203ENST00000615843 TSPY10P0CW01 314 aa24.61■■□□□ 1.53
SPAST-203ENST00000615843 RSF1Q96T23 1441 aaPredicted RBP24.59■■□□□ 1.53
SPAST-203ENST00000615843 DNTTIP2Q5QJE6 756 aaKnown RBP24.58■■□□□ 1.53
SPAST-203ENST00000615843 L1TD1Q5T7N2 865 aaKnown RBP24.49■■□□□ 1.51
SPAST-203ENST00000615843 CEP164Q9UPV0 1460 aa24.49■■□□□ 1.51
SPAST-203ENST00000615843 STAG3Q9UJ98 1225 aa24.47■■□□□ 1.51
SPAST-203ENST00000615843 CARD11Q9BXL7 1154 aa24.46■■□□□ 1.51
SPAST-203ENST00000615843 KNSTRNQ9Y448 316 aa24.45■■□□□ 1.5
SPAST-203ENST00000615843 FTSJ3Q8IY81 847 aaKnown RBP24.44■■□□□ 1.5
SPAST-203ENST00000615843 TIMELESSQ9UNS1 1208 aa24.44■■□□□ 1.5
SPAST-203ENST00000615843 WRNQ14191 1432 aaPredicted RBP eCLIP24.4■■□□□ 1.5
SPAST-203ENST00000615843 CCNB3Q8WWL7 1395 aa24.39■■□□□ 1.49
SPAST-203ENST00000615843 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.39■■□□□ 1.49
SPAST-203ENST00000615843 RGL3Q3MIN7 710 aa24.38■■□□□ 1.49
SPAST-203ENST00000615843 HSP90AB1P08238 724 aaKnown RBP24.37■■□□□ 1.49
SPAST-203ENST00000615843 CASC1Q6TDU7 716 aa24.37■■□□□ 1.49
SPAST-203ENST00000615843 CFAP53Q96M91 514 aa24.37■■□□□ 1.49
SPAST-203ENST00000615843 CDCA8Q53HL2 280 aa24.36■■□□□ 1.49
SPAST-203ENST00000615843 FRAT1Q92837 279 aaPredicted RBP24.36■■□□□ 1.49
SPAST-203ENST00000615843 NEUROD2Q15784 382 aa24.32■■□□□ 1.48
SPAST-203ENST00000615843 TPRNQ4KMQ1 711 aa24.32■■□□□ 1.48
SPAST-203ENST00000615843 MSNP26038 577 aaKnown RBP24.3■■□□□ 1.48
SPAST-203ENST00000615843 IPO9Q96P70 1041 aaKnown RBP24.3■■□□□ 1.48
SPAST-203ENST00000615843 HSCBQ8IWL3 235 aa24.29■■□□□ 1.48
SPAST-203ENST00000615843 ESF1Q9H501 851 aaKnown RBP24.29■■□□□ 1.48
SPAST-203ENST00000615843 PLCB2Q00722 1185 aa24.28■■□□□ 1.48
SPAST-203ENST00000615843 TCERG1O14776 1098 aaKnown RBP24.28■■□□□ 1.48
SPAST-203ENST00000615843 CDK11BP21127 795 aaKnown RBP24.27■■□□□ 1.48
SPAST-203ENST00000615843 ZRSR1Q15695 479 aaKnown RBP24.27■■□□□ 1.48
SPAST-203ENST00000615843 CC2D1BQ5T0F9 858 aaKnown RBP24.26■■□□□ 1.47
SPAST-203ENST00000615843 PNNQ9H307 717 aaKnown RBP24.24■■□□□ 1.47
SPAST-203ENST00000615843 ARID4BQ4LE39 1312 aaPredicted RBP24.24■■□□□ 1.47
SPAST-203ENST00000615843 HSPA5P11021 654 aaKnown RBP24.24■■□□□ 1.47
SPAST-203ENST00000615843 SPRYD3Q8NCJ5 442 aa24.22■■□□□ 1.47
SPAST-203ENST00000615843 MS4A1P11836 297 aa24.21■■□□□ 1.47
SPAST-203ENST00000615843 KIF27Q86VH2 1401 aa24.2■■□□□ 1.46
SPAST-203ENST00000615843 SETD5Q9C0A6 1442 aa24.2■■□□□ 1.46
SPAST-203ENST00000615843 RB1CC1Q8TDY2 1594 aa24.19■■□□□ 1.46
SPAST-203ENST00000615843 MAPK8IP3Q9UPT6 1336 aa24.17■■□□□ 1.46
SPAST-203ENST00000615843 CHAF1AQ13111 956 aaPredicted RBP24.16■■□□□ 1.46
SPAST-203ENST00000615843 RCAN3Q9UKA8 241 aa24.16■■□□□ 1.46
SPAST-203ENST00000615843 CHMP4BQ9H444 224 aaKnown RBP24.15■■□□□ 1.46
SPAST-203ENST00000615843 CFDP1Q9UEE9 299 aaPredicted RBP24.15■■□□□ 1.46
SPAST-203ENST00000615843 VPS8Q8N3P4 1428 aa24.14■■□□□ 1.46
SPAST-203ENST00000615843 SLKQ9H2G2 1235 aaPredicted RBP24.13■■□□□ 1.45
SPAST-203ENST00000615843 GZF1Q9H116 711 aaPredicted RBP24.12■■□□□ 1.45
SPAST-203ENST00000615843 SOGA1O94964 1423 aa24.11■■□□□ 1.45
SPAST-203ENST00000615843 NUDCQ9Y266 331 aa24.11■■□□□ 1.45
SPAST-203ENST00000615843 PLEKHD1A6NEE1 506 aa24.09■■□□□ 1.45
SPAST-203ENST00000615843 GOLGA6L6A8MZA4 724 aa24.07■■□□□ 1.44
SPAST-203ENST00000615843 GBP4Q96PP9 640 aa24.07■■□□□ 1.44
SPAST-203ENST00000615843 USP35Q9P2H5 1018 aa24.07■■□□□ 1.44
SPAST-203ENST00000615843 GOLGA6L3A6NEY3 463 aa24.06■■□□□ 1.44
SPAST-203ENST00000615843 TMF1P82094 1093 aa24.05■■□□□ 1.44
SPAST-203ENST00000615843 RAB3GAP2Q9H2M9 1393 aa24.04■■□□□ 1.44
SPAST-203ENST00000615843 FHAD1B1AJZ9 1412 aa24.04■■□□□ 1.44
SPAST-203ENST00000615843 NPM1P06748 294 aaKnown RBP eCLIP24.04■■□□□ 1.44
SPAST-203ENST00000615843 PTMSP20962 102 aa24.04■■□□□ 1.44
SPAST-203ENST00000615843 SENP3Q9H4L4 574 aaPredicted RBP24.03■■□□□ 1.44
SPAST-203ENST00000615843 FANCIQ9NVI1 1328 aa24.03■■□□□ 1.44
SPAST-203ENST00000615843 NRDCO43847 1150 aa24.02■■□□□ 1.44
SPAST-203ENST00000615843 KANK4Q5T7N3 995 aaPredicted RBP24.01■■□□□ 1.43
SPAST-203ENST00000615843 DCAF11Q8TEB1 546 aa24.01■■□□□ 1.43
SPAST-203ENST00000615843 PPP1R15AO75807 674 aaPredicted RBP24.01■■□□□ 1.43
SPAST-203ENST00000615843 CHMP7Q8WUX9 453 aaPredicted RBP24.01■■□□□ 1.43
SPAST-203ENST00000615843 KCNH8Q96L42 1107 aa24■■□□□ 1.43
SPAST-203ENST00000615843 KTN1Q86UP2 1357 aaKnown RBP24■■□□□ 1.43
SPAST-203ENST00000615843 RSPH6AQ9H0K4 717 aa23.98■■□□□ 1.43
SPAST-203ENST00000615843 ARID3AQ99856 593 aa23.98■■□□□ 1.43
SPAST-203ENST00000615843 U2SURPO15042 1029 aaKnown RBP23.97■■□□□ 1.43
SPAST-203ENST00000615843 GOLGA6L4A6NEF3 574 aa23.97■■□□□ 1.43
SPAST-203ENST00000615843 AMER1Q5JTC6 1135 aaPredicted RBP23.96■■□□□ 1.43
SPAST-203ENST00000615843 RALBP1Q15311 655 aa23.94■■□□□ 1.42
SPAST-203ENST00000615843 KIAA2012Q0VF49 1180 aa23.94■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms