RNA–Protein interactions for RNA: ENST00000615393.5

VEGFA-227, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best) BASIC

Gene VEGFA, Length 984 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-227ENST00000615393 JPH4Q96JJ6 628 aa43.31■■■■■ 4.52
VEGFA-227ENST00000615393 PRG4Q92954 1404 aaPredicted RBP43.28■■■■■ 4.52
VEGFA-227ENST00000615393 CARMIL1Q5VZK9 1371 aa43.24■■■■■ 4.51
VEGFA-227ENST00000615393 KIAA0586Q9BVV6 1533 aa43.18■■■■■ 4.5
VEGFA-227ENST00000615393 RAPGEF2Q9Y4G8 1499 aa42.92■■■■■ 4.46
VEGFA-227ENST00000615393 IQGAP2Q13576 1575 aa42.85■■■■■ 4.45
VEGFA-227ENST00000615393 CARMIL2Q6F5E8 1435 aa42.78■■■■■ 4.44
VEGFA-227ENST00000615393 NPM1P06748 294 aaKnown RBP eCLIP42.72■■■■■ 4.43
VEGFA-227ENST00000615393 PTPRGP23470 1445 aa42.69■■■■■ 4.42
VEGFA-227ENST00000615393 ADCY10Q96PN6 1610 aa42.68■■■■■ 4.42
VEGFA-227ENST00000615393 TNIKQ9UKE5 1360 aa42.66■■■■■ 4.42
VEGFA-227ENST00000615393 PRXQ9BXM0 1461 aa42.59■■■■■ 4.41
VEGFA-227ENST00000615393 UGGT2Q9NYU1 1516 aa42.59■■■■■ 4.41
VEGFA-227ENST00000615393 DISP1Q96F81 1524 aa42.57■■■■■ 4.41
VEGFA-227ENST00000615393 TTBK1Q5TCY1 1321 aaPredicted RBP42.57■■■■■ 4.41
VEGFA-227ENST00000615393 MAPKBP1O60336 1514 aa42.56■■■■■ 4.4
VEGFA-227ENST00000615393 CTTNBP2Q8WZ74 1663 aa42.5■■■■■ 4.39
VEGFA-227ENST00000615393 KIF13AQ9H1H9 1805 aa42.47■■■■■ 4.39
VEGFA-227ENST00000615393 ABCC10Q5T3U5 1492 aa42.44■■■■■ 4.38
VEGFA-227ENST00000615393 KIAA0556O60303 1618 aa42.44■■■■■ 4.38
VEGFA-227ENST00000615393 CSRNP3Q8WYN3 585 aa42.41■■■■■ 4.38
VEGFA-227ENST00000615393 FAM69CQ0P6D2 419 aa42.4■■■■■ 4.38
VEGFA-227ENST00000615393 ABCC2Q92887 1545 aa42.39■■■■■ 4.38
VEGFA-227ENST00000615393 EEA1Q15075 1411 aa42.38■■■■■ 4.38
VEGFA-227ENST00000615393 UACAQ9BZF9 1416 aa42.37■■■■■ 4.37
VEGFA-227ENST00000615393 UHRF1BP1LA0JNW5 1464 aa42.37■■■■■ 4.37
VEGFA-227ENST00000615393 GOLGA3Q08378 1498 aa42.34■■■■■ 4.37
VEGFA-227ENST00000615393 DIP2BQ9P265 1576 aa42.34■■■■■ 4.37
VEGFA-227ENST00000615393 PLB1Q6P1J6 1458 aa42.18■■■■■ 4.34
VEGFA-227ENST00000615393 ASXL2Q76L83 1435 aa42.18■■■■■ 4.34
VEGFA-227ENST00000615393 KDM5BQ9UGL1 1544 aa42.16■■■■■ 4.34
VEGFA-227ENST00000615393 FAM9AQ8IZU1 332 aaPredicted RBP42.11■■■■■ 4.33
VEGFA-227ENST00000615393 CHIC1Q5VXU3 224 aa42.08■■■■■ 4.33
VEGFA-227ENST00000615393 ZCCHC11Q5TAX3 1644 aaKnown RBP42.06■■■■■ 4.32
VEGFA-227ENST00000615393 ABCA8O94911 1581 aa42.01■■■■■ 4.32
VEGFA-227ENST00000615393 GLI2P10070 1586 aa42■■■■■ 4.31
VEGFA-227ENST00000615393 TSPOAP1O95153 1857 aa41.96■■■■■ 4.31
VEGFA-227ENST00000615393 P3H3Q8IVL6 736 aa41.95■■■■■ 4.31
VEGFA-227ENST00000615393 KIF21BO75037 1637 aa41.95■■■■■ 4.31
VEGFA-227ENST00000615393 SAMD9Q5K651 1589 aa41.93■■■■■ 4.3
VEGFA-227ENST00000615393 EPRSP07814 1512 aaKnown RBP41.92■■■■■ 4.3
VEGFA-227ENST00000615393 WDR7Q9Y4E6 1490 aa41.87■■■■■ 4.29
VEGFA-227ENST00000615393 KDM6BO15054 1643 aa41.85■■■■■ 4.29
VEGFA-227ENST00000615393 RANGAP1P46060 587 aaPredicted RBP41.79■■■■■ 4.28
VEGFA-227ENST00000615393 PPRC1Q5VV67 1664 aaKnown RBP41.76■■■■■ 4.28
VEGFA-227ENST00000615393 MAP3K4Q9Y6R4 1608 aa41.76■■■■■ 4.28
VEGFA-227ENST00000615393 TEX14Q8IWB6 1497 aa41.68■■■■■ 4.26
VEGFA-227ENST00000615393 FHOD3Q2V2M9 1422 aa41.68■■■■■ 4.26
VEGFA-227ENST00000615393 RAPGEF6Q8TEU7 1601 aa41.67■■■■■ 4.26
VEGFA-227ENST00000615393 EFCAB5A4FU69 1503 aa41.67■■■■■ 4.26
VEGFA-227ENST00000615393 ATP10BO94823 1461 aa41.66■■■■■ 4.26
VEGFA-227ENST00000615393 ARID3CA6NKF2 412 aa41.65■■■■■ 4.26
VEGFA-227ENST00000615393 AEBP2Q6ZN18 517 aaPredicted RBP41.65■■■■■ 4.26
VEGFA-227ENST00000615393 KCNH8Q96L42 1107 aa41.65■■■■■ 4.26
VEGFA-227ENST00000615393 UBTFP17480 764 aaKnown RBP41.64■■■■■ 4.26
VEGFA-227ENST00000615393 EHMT2Q96KQ7 1210 aa41.62■■■■■ 4.25
VEGFA-227ENST00000615393 CFAP43Q8NDM7 1665 aa41.56■■■■■ 4.24
VEGFA-227ENST00000615393 CD109Q6YHK3 1445 aa41.56■■■■■ 4.24
VEGFA-227ENST00000615393 NUP153P49790 1475 aaKnown RBP41.51■■■■■ 4.24
VEGFA-227ENST00000615393 MAGI3Q5TCQ9 1506 aa41.5■■■■■ 4.23
VEGFA-227ENST00000615393 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP41.5■■■■■ 4.23
VEGFA-227ENST00000615393 HNRNPUL2Q1KMD3 747 aaKnown RBP41.5■■■■■ 4.23
VEGFA-227ENST00000615393 COL17A1Q9UMD9 1497 aaPredicted RBP41.44■■■■■ 4.22
VEGFA-227ENST00000615393 ABCA9Q8IUA7 1624 aa41.34■■■■■ 4.21
VEGFA-227ENST00000615393 ARHGAP35Q9NRY4 1499 aa41.34■■■■■ 4.21
VEGFA-227ENST00000615393 FMN1Q68DA7 1419 aa41.31■■■■■ 4.2
VEGFA-227ENST00000615393 PLEKHD1A6NEE1 506 aa41.29■■■■■ 4.2
VEGFA-227ENST00000615393 PHLDB1Q86UU1 1377 aa41.18■■■■■ 4.18
VEGFA-227ENST00000615393 HECW1Q76N89 1606 aa41.17■■■■■ 4.18
VEGFA-227ENST00000615393 KDM4FA0A1W2PPD8 638 aa41.16■■■■■ 4.18
VEGFA-227ENST00000615393 CDK13Q14004 1512 aaKnown RBP41.15■■■■■ 4.18
VEGFA-227ENST00000615393 ARAP3Q8WWN8 1544 aa41.15■■■■■ 4.18
VEGFA-227ENST00000615393 ATP1B4Q9UN42 357 aaPredicted RBP41.15■■■■■ 4.18
VEGFA-227ENST00000615393 NEO1Q92859 1461 aa41.11■■■■■ 4.17
VEGFA-227ENST00000615393 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP41.03■■■■■ 4.162e-6■■□□□ 11.9
VEGFA-227ENST00000615393 CDK11AQ9UQ88 783 aaPredicted RBP41.01■■■■■ 4.16
VEGFA-227ENST00000615393 ADGRL1O94910 1474 aa41■■■■■ 4.15
VEGFA-227ENST00000615393 TTC37Q6PGP7 1564 aa40.95■■■■■ 4.15
VEGFA-227ENST00000615393 CFAP74Q9C0B2 1584 aa40.92■■■■■ 4.14
VEGFA-227ENST00000615393 RAPGEF3O95398 923 aa40.91■■■■■ 4.14
VEGFA-227ENST00000615393 FANCAO15360 1455 aa40.9■■■■■ 4.14
VEGFA-227ENST00000615393 CLIP1P30622 1438 aa40.9■■■■■ 4.14
VEGFA-227ENST00000615393 CASKIN1Q8WXD9 1431 aa40.89■■■■■ 4.14
VEGFA-227ENST00000615393 AKNAQ7Z591 1439 aa40.87■■■■■ 4.13
VEGFA-227ENST00000615393 PCF11O94913 1555 aaKnown RBP40.85■■■■■ 4.13
VEGFA-227ENST00000615393 TROQ12816 1431 aaPredicted RBP40.84■■■■■ 4.13
VEGFA-227ENST00000615393 DENND4BO75064 1496 aaPredicted RBP40.82■■■■■ 4.12
VEGFA-227ENST00000615393 CCDC18Q5T9S5 1454 aa40.82■■■■■ 4.12
VEGFA-227ENST00000615393 LRRIQ1Q96JM4 1722 aa40.81■■■■■ 4.12
VEGFA-227ENST00000615393 PLCH2O75038 1416 aa40.81■■■■■ 4.12
VEGFA-227ENST00000615393 FRMPD1Q5SYB0 1578 aa40.81■■■■■ 4.12
VEGFA-227ENST00000615393 KIF14Q15058 1648 aa40.8■■■■■ 4.12
VEGFA-227ENST00000615393 FYCO1Q9BQS8 1478 aa40.77■■■■■ 4.12
VEGFA-227ENST00000615393 MYO5CQ9NQX4 1742 aa40.71■■■■■ 4.11
VEGFA-227ENST00000615393 RICTORQ6R327 1708 aa40.7■■■■■ 4.11
VEGFA-227ENST00000615393 EFCAB2Q5VUJ9 269 aa40.67■■■■■ 4.1
VEGFA-227ENST00000615393 SCAPERQ9BY12 1400 aa40.62■■■■■ 4.09
VEGFA-227ENST00000615393 ARHGEF40Q8TER5 1519 aa40.61■■■■■ 4.09
VEGFA-227ENST00000615393 ZMYM4Q5VZL5 1548 aa40.6■■■■■ 4.09
VEGFA-227ENST00000615393 ARHGAP5Q13017 1502 aa40.58■■■■■ 4.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms