RNA–Protein interactions for RNA: ENST00000614526.1

LIG4-205, Transcript of DNA ligase 4, humanhuman

TSL 2 BASIC

Gene LIG4, Length 3,884 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-205ENST00000614526 MRC2Q9UBG0 1479 aa5.24□□□□□ -1.57
LIG4-205ENST00000614526 ZNF608Q9ULD9 1512 aaPredicted RBP5.24□□□□□ -1.57
LIG4-205ENST00000614526 FHOD3Q2V2M9 1422 aa5.23□□□□□ -1.57
LIG4-205ENST00000614526 CHMP7Q8WUX9 453 aaPredicted RBP5.2□□□□□ -1.58
LIG4-205ENST00000614526 TARBP1Q13395 1621 aaKnown RBP5.19□□□□□ -1.58
LIG4-205ENST00000614526 FAM50AQ14320 339 aaKnown RBP5.18□□□□□ -1.58
LIG4-205ENST00000614526 ABCA5Q8WWZ7 1642 aa5.18□□□□□ -1.58
LIG4-205ENST00000614526 IFT140Q96RY7 1462 aa5.17□□□□□ -1.58
LIG4-205ENST00000614526 GRIN2BQ13224 1484 aa5.17□□□□□ -1.58
LIG4-205ENST00000614526 ZEB1P37275 1124 aaPredicted RBP5.17□□□□□ -1.58
LIG4-205ENST00000614526 WDR97A6NE52 1622 aa5.17□□□□□ -1.58
LIG4-205ENST00000614526 SNAPC4Q5SXM2 1469 aa5.17□□□□□ -1.58
LIG4-205ENST00000614526 FHAD1B1AJZ9 1412 aa5.17□□□□□ -1.58
LIG4-205ENST00000614526 WDR62O43379 1518 aa5.17□□□□□ -1.58
LIG4-205ENST00000614526 CUL7Q14999 1698 aa5.16□□□□□ -1.58
LIG4-205ENST00000614526 THOC2Q8NI27 1593 aaKnown RBP5.14□□□□□ -1.59
LIG4-205ENST00000614526 PHLDB1Q86UU1 1377 aa5.14□□□□□ -1.59
LIG4-205ENST00000614526 PCF11O94913 1555 aaKnown RBP5.14□□□□□ -1.59
LIG4-205ENST00000614526 PBRM1Q86U86 1689 aa5.13□□□□□ -1.59
LIG4-205ENST00000614526 EIF4G3O43432 1585 aaKnown RBP5.13□□□□□ -1.59
LIG4-205ENST00000614526 MTUS2Q5JR59 1369 aa5.13□□□□□ -1.59
LIG4-205ENST00000614526 JPH4Q96JJ6 628 aa5.13□□□□□ -1.59
LIG4-205ENST00000614526 CCNB3Q8WWL7 1395 aa5.13□□□□□ -1.59
LIG4-205ENST00000614526 FMN1Q68DA7 1419 aa5.13□□□□□ -1.59
LIG4-205ENST00000614526 LRRC9Q6ZRR7 1453 aa5.13□□□□□ -1.59
LIG4-205ENST00000614526 ADAMTS12P58397 1594 aa5.12□□□□□ -1.59
LIG4-205ENST00000614526 CTTNBP2Q8WZ74 1663 aa5.12□□□□□ -1.59
LIG4-205ENST00000614526 TIAM1Q13009 1591 aa5.12□□□□□ -1.59
LIG4-205ENST00000614526 GRIN2AQ12879 1464 aa5.12□□□□□ -1.59
LIG4-205ENST00000614526 CASKIN1Q8WXD9 1431 aa5.12□□□□□ -1.59
LIG4-205ENST00000614526 EFCAB5A4FU69 1503 aa5.11□□□□□ -1.59
LIG4-205ENST00000614526 CHIC2Q9UKJ5 165 aa5.11□□□□□ -1.59
LIG4-205ENST00000614526 IQGAP2Q13576 1575 aa5.11□□□□□ -1.59
LIG4-205ENST00000614526 FYCO1Q9BQS8 1478 aa5.1□□□□□ -1.59
LIG4-205ENST00000614526 KIAA0586Q9BVV6 1533 aa5.09□□□□□ -1.59
LIG4-205ENST00000614526 SYNJ2O15056 1496 aa5.09□□□□□ -1.59
LIG4-205ENST00000614526 RRBP1Q9P2E9 1410 aaKnown RBP5.09□□□□□ -1.59
LIG4-205ENST00000614526 CDK13Q14004 1512 aaKnown RBP5.09□□□□□ -1.59
LIG4-205ENST00000614526 MAGI1Q96QZ7 1491 aaPredicted RBP5.09□□□□□ -1.6
LIG4-205ENST00000614526 ZNF777Q9ULD5 760 aaPredicted RBP5.08□□□□□ -1.6
LIG4-205ENST00000614526 SAMD9Q5K651 1589 aa5.08□□□□□ -1.6
LIG4-205ENST00000614526 RRP7BPQ9NSQ0 103 aa5.08□□□□□ -1.6
LIG4-205ENST00000614526 CEP170Q5SW79 1584 aa5.08□□□□□ -1.6
LIG4-205ENST00000614526 DISP1Q96F81 1524 aa5.08□□□□□ -1.6
LIG4-205ENST00000614526 NEUROD1Q13562 356 aa5.07□□□□□ -1.6
LIG4-205ENST00000614526 PLB1Q6P1J6 1458 aa5.07□□□□□ -1.6
LIG4-205ENST00000614526 RAB3GAP2Q9H2M9 1393 aa5.07□□□□□ -1.6
LIG4-205ENST00000614526 ZNF644Q9H582 1327 aaPredicted RBP5.07□□□□□ -1.6
LIG4-205ENST00000614526 NCOA2Q15596 1464 aa5.06□□□□□ -1.6
LIG4-205ENST00000614526 DHX57Q6P158 1386 aaKnown RBP5.06□□□□□ -1.6
LIG4-205ENST00000614526 EPRSP07814 1512 aaKnown RBP5.06□□□□□ -1.6
LIG4-205ENST00000614526 MAP3K1Q13233 1512 aa5.06□□□□□ -1.6
LIG4-205ENST00000614526 MAGI3Q5TCQ9 1506 aa5.06□□□□□ -1.6
LIG4-205ENST00000614526 PRG4Q92954 1404 aaPredicted RBP5.06□□□□□ -1.6
LIG4-205ENST00000614526 SIN3AQ96ST3 1273 aa5.06□□□□□ -1.6
LIG4-205ENST00000614526 UGGT2Q9NYU1 1516 aa5.06□□□□□ -1.6
LIG4-205ENST00000614526 CARMIL2Q6F5E8 1435 aa5.05□□□□□ -1.6
LIG4-205ENST00000614526 CDK11AQ9UQ88 783 aaPredicted RBP5.05□□□□□ -1.6
LIG4-205ENST00000614526 FGD6Q6ZV73 1430 aa5.05□□□□□ -1.6
LIG4-205ENST00000614526 NUP160Q12769 1436 aa5.05□□□□□ -1.6
LIG4-205ENST00000614526 KCNH8Q96L42 1107 aa5.05□□□□□ -1.6
LIG4-205ENST00000614526 LRRIQ1Q96JM4 1722 aa5.05□□□□□ -1.6
LIG4-205ENST00000614526 KIAA0556O60303 1618 aa5.04□□□□□ -1.6
LIG4-205ENST00000614526 CFAP43Q8NDM7 1665 aa5.04□□□□□ -1.6
LIG4-205ENST00000614526 PLEKHD1A6NEE1 506 aa5.04□□□□□ -1.6
LIG4-205ENST00000614526 TRIM52Q96A61 297 aa5.04□□□□□ -1.6
LIG4-205ENST00000614526 PTPRKQ15262 1439 aa5.04□□□□□ -1.6
LIG4-205ENST00000614526 SETD5Q9C0A6 1442 aa5.04□□□□□ -1.6
LIG4-205ENST00000614526 NUP153P49790 1475 aaKnown RBP5.04□□□□□ -1.6
LIG4-205ENST00000614526 PTPRGP23470 1445 aa5.04□□□□□ -1.6
LIG4-205ENST00000614526 MYOM3Q5VTT5 1437 aa5.03□□□□□ -1.6
LIG4-205ENST00000614526 CFDP1Q9UEE9 299 aaPredicted RBP5.03□□□□□ -1.6
LIG4-205ENST00000614526 HECW1Q76N89 1606 aa5.03□□□□□ -1.6
LIG4-205ENST00000614526 CCDC18Q5T9S5 1454 aa5.02□□□□□ -1.61
LIG4-205ENST00000614526 DIEXFQ68CQ4 756 aaKnown RBP5.02□□□□□ -1.61
LIG4-205ENST00000614526 FOXD1Q16676 465 aa5.02□□□□□ -1.61
LIG4-205ENST00000614526 ZNF316A6NFI3 1004 aaPredicted RBP5.01□□□□□ -1.61
LIG4-205ENST00000614526 EHBP1L1Q8N3D4 1523 aa5.01□□□□□ -1.61
LIG4-205ENST00000614526 ERCC6L2Q5T890 1561 aa5.01□□□□□ -1.61
LIG4-205ENST00000614526 CHD1O14646 1710 aa5.01□□□□□ -1.61
LIG4-205ENST00000614526 RAPGEF6Q8TEU7 1601 aa5.01□□□□□ -1.61
LIG4-205ENST00000614526 SUPT6HQ7KZ85 1726 aaKnown RBP5.01□□□□□ -1.61
LIG4-205ENST00000614526 HNRNPMP52272 730 aaKnown RBP eCLIP5□□□□□ -1.61
LIG4-205ENST00000614526 HIRIP3Q9BW71 556 aaPredicted RBP5□□□□□ -1.61
LIG4-205ENST00000614526 ATP10BO94823 1461 aa5□□□□□ -1.61
LIG4-205ENST00000614526 TROQ12816 1431 aaPredicted RBP4.99□□□□□ -1.61
LIG4-205ENST00000614526 PTPN23Q9H3S7 1636 aa4.99□□□□□ -1.61
LIG4-205ENST00000614526 NAIPQ13075 1403 aa4.98□□□□□ -1.61
LIG4-205ENST00000614526 ARHGEF11O15085 1522 aa4.98□□□□□ -1.61
LIG4-205ENST00000614526 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP4.98□□□□□ -1.619e-9■■■■■ 43.9
LIG4-205ENST00000614526 OSCARQ8IYS5 282 aa4.97□□□□□ -1.61
LIG4-205ENST00000614526 CLSPNQ9HAW4 1339 aa4.97□□□□□ -1.61
LIG4-205ENST00000614526 UACAQ9BZF9 1416 aa4.97□□□□□ -1.61
LIG4-205ENST00000614526 KIF14Q15058 1648 aa4.97□□□□□ -1.61
LIG4-205ENST00000614526 MAPKBP1O60336 1514 aa4.97□□□□□ -1.61
LIG4-205ENST00000614526 HFM1A2PYH4 1435 aa4.97□□□□□ -1.61
LIG4-205ENST00000614526 GPATCH8Q9UKJ3 1502 aaKnown RBP4.97□□□□□ -1.61
LIG4-205ENST00000614526 ABCC5O15440 1437 aa4.96□□□□□ -1.61
LIG4-205ENST00000614526 TSPY4P0CV99 314 aa4.96□□□□□ -1.62
LIG4-205ENST00000614526 TSPY10P0CW01 314 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms