RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 RRP7BPQ9NSQ0 103 aa17.43■□□□□ 0.38
MSH6-213ENST00000614496 EIF4G1Q04637 1599 aaKnown RBP17.43■□□□□ 0.38
MSH6-213ENST00000614496 FAM9BQ8IZU0 186 aa17.43■□□□□ 0.38
MSH6-213ENST00000614496 CARMIL1Q5VZK9 1371 aa17.42■□□□□ 0.38
MSH6-213ENST00000614496 SETD5Q9C0A6 1442 aa17.41■□□□□ 0.38
MSH6-213ENST00000614496 ANP32EQ9BTT0 268 aa17.38■□□□□ 0.37
MSH6-213ENST00000614496 ARAP1Q96P48 1450 aa17.35■□□□□ 0.37
MSH6-213ENST00000614496 SENP3-EIF4A1A0A087X0R7 540 aa17.33■□□□□ 0.36
MSH6-213ENST00000614496 PPP1R15AO75807 674 aaPredicted RBP17.29■□□□□ 0.36
MSH6-213ENST00000614496 MRS2Q9HD23 443 aa17.29■□□□□ 0.36
MSH6-213ENST00000614496 ZNF777Q9ULD5 760 aaPredicted RBP17.28■□□□□ 0.36
MSH6-213ENST00000614496 FHAD1B1AJZ9 1412 aa17.27■□□□□ 0.36
MSH6-213ENST00000614496 EIF4G2P78344 907 aaKnown RBP eCLIP17.26■□□□□ 0.35
MSH6-213ENST00000614496 RBM19Q9Y4C8 960 aaKnown RBP17.25■□□□□ 0.35
MSH6-213ENST00000614496 FHOD3Q2V2M9 1422 aa17.24■□□□□ 0.35
MSH6-213ENST00000614496 PRXQ9BXM0 1461 aa17.23■□□□□ 0.35
MSH6-213ENST00000614496 CCER2I3L3R5 266 aa17.21■□□□□ 0.35
MSH6-213ENST00000614496 FBLN2P98095 1184 aa17.21■□□□□ 0.35
MSH6-213ENST00000614496 IGF1RP08069 1367 aa17.21■□□□□ 0.35
MSH6-213ENST00000614496 ARHGAP35Q9NRY4 1499 aa17.21■□□□□ 0.35
MSH6-213ENST00000614496 PHLDB1Q86UU1 1377 aa17.21■□□□□ 0.35
MSH6-213ENST00000614496 RRBP1Q9P2E9 1410 aaKnown RBP17.21■□□□□ 0.34
MSH6-213ENST00000614496 TIMELESSQ9UNS1 1208 aa17.21■□□□□ 0.34
MSH6-213ENST00000614496 BICRAQ9NZM4 1560 aa17.19■□□□□ 0.34
MSH6-213ENST00000614496 FOXD1Q16676 465 aa17.19■□□□□ 0.34
MSH6-213ENST00000614496 TOP2BQ02880 1626 aa17.18■□□□□ 0.34
MSH6-213ENST00000614496 SALL2Q9Y467 1007 aaPredicted RBP17.17■□□□□ 0.34
MSH6-213ENST00000614496 UNC13AQ9UPW8 1703 aa17.17■□□□□ 0.34
MSH6-213ENST00000614496 HSPA5P11021 654 aaKnown RBP17.16■□□□□ 0.34
MSH6-213ENST00000614496 ERICH3Q5RHP9 1530 aa17.15■□□□□ 0.34
MSH6-213ENST00000614496 SLC4A1APQ9BWU0 796 aaKnown RBP17.14■□□□□ 0.34
MSH6-213ENST00000614496 CUX1P39880 1505 aa17.12■□□□□ 0.33
MSH6-213ENST00000614496 B4GALNT3Q6L9W6 998 aa17.12■□□□□ 0.33
MSH6-213ENST00000614496 CADPSQ9ULU8 1353 aa17.12■□□□□ 0.33
MSH6-213ENST00000614496 RTL5Q5HYW3 569 aaPredicted RBP17.1■□□□□ 0.33
MSH6-213ENST00000614496 TDRD9Q8NDG6 1382 aaKnown RBP17.1■□□□□ 0.33
MSH6-213ENST00000614496 NBR1Q14596 966 aa17.09■□□□□ 0.33
MSH6-213ENST00000614496 NPM2Q86SE8 214 aaKnown RBP17.09■□□□□ 0.33
MSH6-213ENST00000614496 KDM2AQ9Y2K7 1162 aa17.09■□□□□ 0.33
MSH6-213ENST00000614496 LRRC9Q6ZRR7 1453 aa17.08■□□□□ 0.33
MSH6-213ENST00000614496 CCDC136Q96JN2 1154 aa17.08■□□□□ 0.32
MSH6-213ENST00000614496 TMC1Q8TDI8 760 aa17.06■□□□□ 0.32
MSH6-213ENST00000614496 FGD5Q6ZNL6 1462 aa17.06■□□□□ 0.32
MSH6-213ENST00000614496 WDR97A6NE52 1622 aa17.05■□□□□ 0.32
MSH6-213ENST00000614496 NCAPD3P42695 1498 aa17.03■□□□□ 0.32
MSH6-213ENST00000614496 PPP4R2Q9NY27 417 aa17.03■□□□□ 0.32
MSH6-213ENST00000614496 ANP32AP39687 249 aaKnown RBP17.03■□□□□ 0.32
MSH6-213ENST00000614496 L3MBTL2Q969R5 705 aa17.02■□□□□ 0.31
MSH6-213ENST00000614496 PEG3Q9GZU2 1588 aa17.01■□□□□ 0.31
MSH6-213ENST00000614496 RAD54L2Q9Y4B4 1467 aa17.01■□□□□ 0.31
MSH6-213ENST00000614496 MPHOSPH9Q99550 1183 aa17■□□□□ 0.31
MSH6-213ENST00000614496 FMN1Q68DA7 1419 aa17■□□□□ 0.31
MSH6-213ENST00000614496 DAXXQ9UER7 740 aaPredicted RBP17■□□□□ 0.31
MSH6-213ENST00000614496 CFTRP13569 1480 aa17■□□□□ 0.31
MSH6-213ENST00000614496 CCDC18Q5T9S5 1454 aa16.99■□□□□ 0.31
MSH6-213ENST00000614496 MYT1LQ9UL68 1186 aa16.99■□□□□ 0.31
MSH6-213ENST00000614496 BCL11AQ9H165 835 aa16.98■□□□□ 0.31
MSH6-213ENST00000614496 TIAM1Q13009 1591 aa16.96■□□□□ 0.31
MSH6-213ENST00000614496 FGD6Q6ZV73 1430 aa16.94■□□□□ 0.3
MSH6-213ENST00000614496 FANCD2Q9BXW9 1451 aa16.94■□□□□ 0.3
MSH6-213ENST00000614496 CFDP1Q9UEE9 299 aaPredicted RBP16.93■□□□□ 0.3
MSH6-213ENST00000614496 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.91■□□□□ 0.31e-10■■■□□ 14.8
MSH6-213ENST00000614496 ZBTB47Q9UFB7 747 aaPredicted RBP16.89■□□□□ 0.3
MSH6-213ENST00000614496 WASHC2AQ641Q2 1341 aa16.89■□□□□ 0.29
MSH6-213ENST00000614496 MAPKBP1O60336 1514 aa16.88■□□□□ 0.29
MSH6-213ENST00000614496 CARD11Q9BXL7 1154 aa16.88■□□□□ 0.29
MSH6-213ENST00000614496 BIVM-ERCC5R4GMW8 1640 aa16.88■□□□□ 0.29
MSH6-213ENST00000614496 RGL3Q3MIN7 710 aa16.88■□□□□ 0.29
MSH6-213ENST00000614496 PRKRIP1Q9H875 184 aaPredicted RBP16.87■□□□□ 0.29
MSH6-213ENST00000614496 CCDC184Q52MB2 194 aa16.87■□□□□ 0.29
MSH6-213ENST00000614496 UACAQ9BZF9 1416 aa16.86■□□□□ 0.29
MSH6-213ENST00000614496 TSPY4P0CV99 314 aa16.86■□□□□ 0.29
MSH6-213ENST00000614496 TSPY10P0CW01 314 aa16.86■□□□□ 0.29
MSH6-213ENST00000614496 CASKIN1Q8WXD9 1431 aa16.85■□□□□ 0.29
MSH6-213ENST00000614496 CHMP7Q8WUX9 453 aaPredicted RBP16.84■□□□□ 0.29
MSH6-213ENST00000614496 HMGXB3Q12766 1538 aa16.82■□□□□ 0.28
MSH6-213ENST00000614496 PKD2Q13563 968 aa16.82■□□□□ 0.28
MSH6-213ENST00000614496 MYOM3Q5VTT5 1437 aa16.81■□□□□ 0.28
MSH6-213ENST00000614496 NOP58Q9Y2X3 529 aaKnown RBP16.81■□□□□ 0.28
MSH6-213ENST00000614496 PCF11O94913 1555 aaKnown RBP16.8■□□□□ 0.28
MSH6-213ENST00000614496 NCOA2Q15596 1464 aa16.8■□□□□ 0.28
MSH6-213ENST00000614496 ZNF644Q9H582 1327 aaPredicted RBP16.79■□□□□ 0.28
MSH6-213ENST00000614496 FYCO1Q9BQS8 1478 aa16.78■□□□□ 0.28
MSH6-213ENST00000614496 DCAF11Q8TEB1 546 aa16.78■□□□□ 0.28
MSH6-213ENST00000614496 NESP48681 1621 aa16.77■□□□□ 0.27
MSH6-213ENST00000614496 PLEKHD1A6NEE1 506 aa16.76■□□□□ 0.27
MSH6-213ENST00000614496 ERICH6BQ5W0A0 696 aa16.76■□□□□ 0.27
MSH6-213ENST00000614496 DEKP35659 375 aaKnown RBP16.74■□□□□ 0.27
MSH6-213ENST00000614496 HFM1A2PYH4 1435 aa16.74■□□□□ 0.27
MSH6-213ENST00000614496 CCDC7Q96M83 1385 aa16.74■□□□□ 0.27
MSH6-213ENST00000614496 KIF7Q2M1P5 1343 aa16.73■□□□□ 0.27
MSH6-213ENST00000614496 NBPF8Q3BBV2 869 aa16.73■□□□□ 0.27
MSH6-213ENST00000614496 C11orf95C9JLR9 678 aaPredicted RBP16.73■□□□□ 0.27
MSH6-213ENST00000614496 CC2D1BQ5T0F9 858 aaKnown RBP16.72■□□□□ 0.27
MSH6-213ENST00000614496 NAIPQ13075 1403 aa16.72■□□□□ 0.27
MSH6-213ENST00000614496 ZBED9Q6R2W3 1325 aa16.72■□□□□ 0.27
MSH6-213ENST00000614496 LAS1LQ9Y4W2 734 aaKnown RBP16.72■□□□□ 0.27
MSH6-213ENST00000614496 MSH5O43196 834 aa16.71■□□□□ 0.27
MSH6-213ENST00000614496 POLA1P09884 1462 aaPredicted RBP16.71■□□□□ 0.27
MSH6-213ENST00000614496 NUDCQ9Y266 331 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms