RNA–Protein interactions for RNA: ENST00000612311.4

TMCO1-208, Transcript of transmembrane and coiled-coil domains 1, humanhuman

TSL 1 (best) BASIC

Gene TMCO1, Length 4,468 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMCO1-208ENST00000612311 PLEKHD1A6NEE1 506 aa11.7□□□□□ -0.54
TMCO1-208ENST00000612311 NPM1P06748 294 aaKnown RBP eCLIP11.7□□□□□ -0.54
TMCO1-208ENST00000612311 KDM2AQ9Y2K7 1162 aa11.7□□□□□ -0.54
TMCO1-208ENST00000612311 CHGAP10645 457 aaKnown RBP11.7□□□□□ -0.54
TMCO1-208ENST00000612311 FHAD1B1AJZ9 1412 aa11.7□□□□□ -0.54
TMCO1-208ENST00000612311 MRS2Q9HD23 443 aa11.69□□□□□ -0.54
TMCO1-208ENST00000612311 TMC1Q8TDI8 760 aa11.68□□□□□ -0.54
TMCO1-208ENST00000612311 CANXP27824 592 aaKnown RBP11.68□□□□□ -0.54
TMCO1-208ENST00000612311 SIN3AQ96ST3 1273 aa11.68□□□□□ -0.54
TMCO1-208ENST00000612311 CFDP1Q9UEE9 299 aaPredicted RBP11.67□□□□□ -0.54
TMCO1-208ENST00000612311 KANK4Q5T7N3 995 aaPredicted RBP11.66□□□□□ -0.54
TMCO1-208ENST00000612311 NEFMP07197 916 aa11.65□□□□□ -0.54
TMCO1-208ENST00000612311 SALL2Q9Y467 1007 aaPredicted RBP11.64□□□□□ -0.55
TMCO1-208ENST00000612311 KCNH8Q96L42 1107 aa11.62□□□□□ -0.55
TMCO1-208ENST00000612311 ATAD2BQ9ULI0 1458 aa11.62□□□□□ -0.55
TMCO1-208ENST00000612311 ANP32AP39687 249 aaKnown RBP11.61□□□□□ -0.55
TMCO1-208ENST00000612311 SMARCA4P51532 1647 aa11.6□□□□□ -0.55
TMCO1-208ENST00000612311 ZBTB47Q9UFB7 747 aaPredicted RBP11.6□□□□□ -0.55
TMCO1-208ENST00000612311 STAG3Q9UJ98 1225 aa11.59□□□□□ -0.55
TMCO1-208ENST00000612311 ESF1Q9H501 851 aaKnown RBP11.59□□□□□ -0.55
TMCO1-208ENST00000612311 TIMELESSQ9UNS1 1208 aa11.58□□□□□ -0.56
TMCO1-208ENST00000612311 RGL3Q3MIN7 710 aa11.57□□□□□ -0.56
TMCO1-208ENST00000612311 CCDC136Q96JN2 1154 aa11.57□□□□□ -0.56
TMCO1-208ENST00000612311 CADPSQ9ULU8 1353 aa11.56□□□□□ -0.56
TMCO1-208ENST00000612311 RUSC2Q8N2Y8 1516 aa11.56□□□□□ -0.56
TMCO1-208ENST00000612311 SETD5Q9C0A6 1442 aa11.56□□□□□ -0.56
TMCO1-208ENST00000612311 IRX6P78412 446 aaPredicted RBP11.56□□□□□ -0.56
TMCO1-208ENST00000612311 TDRD9Q8NDG6 1382 aaKnown RBP11.56□□□□□ -0.56
TMCO1-208ENST00000612311 RAPGEF2Q9Y4G8 1499 aa11.56□□□□□ -0.56
TMCO1-208ENST00000612311 NPM2Q86SE8 214 aaKnown RBP11.55□□□□□ -0.56
TMCO1-208ENST00000612311 ERCC6Q03468 1493 aa11.54□□□□□ -0.56
TMCO1-208ENST00000612311 WDR43Q15061 677 aaKnown RBP eCLIP11.54□□□□□ -0.56
TMCO1-208ENST00000612311 EIF4G1Q04637 1599 aaKnown RBP11.54□□□□□ -0.56
TMCO1-208ENST00000612311 BCL11AQ9H165 835 aa11.53□□□□□ -0.56
TMCO1-208ENST00000612311 PDS5BQ9NTI5 1447 aa11.53□□□□□ -0.56
TMCO1-208ENST00000612311 ARHGAP35Q9NRY4 1499 aa11.52□□□□□ -0.56
TMCO1-208ENST00000612311 CARD11Q9BXL7 1154 aa11.52□□□□□ -0.57
TMCO1-208ENST00000612311 SLC24A1O60721 1099 aa11.51□□□□□ -0.57
TMCO1-208ENST00000612311 RAB3GAP2Q9H2M9 1393 aa11.51□□□□□ -0.57
TMCO1-208ENST00000612311 FMN1Q68DA7 1419 aa11.5□□□□□ -0.57
TMCO1-208ENST00000612311 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.49□□□□□ -0.57
TMCO1-208ENST00000612311 SUPT16HQ9Y5B9 1047 aaKnown RBP11.47□□□□□ -0.57
TMCO1-208ENST00000612311 FHOD3Q2V2M9 1422 aa11.45□□□□□ -0.58
TMCO1-208ENST00000612311 SENP3-EIF4A1A0A087X0R7 540 aa11.44□□□□□ -0.58
TMCO1-208ENST00000612311 CDCA8Q53HL2 280 aa11.44□□□□□ -0.58
TMCO1-208ENST00000612311 PLPPR3Q6T4P5 718 aa11.42□□□□□ -0.58
TMCO1-208ENST00000612311 CCER2I3L3R5 266 aa11.42□□□□□ -0.58
TMCO1-208ENST00000612311 PPP1R15AO75807 674 aaPredicted RBP11.42□□□□□ -0.58
TMCO1-208ENST00000612311 KNSTRNQ9Y448 316 aa11.42□□□□□ -0.58
TMCO1-208ENST00000612311 FOXD1Q16676 465 aa11.41□□□□□ -0.58
TMCO1-208ENST00000612311 DCAF11Q8TEB1 546 aa11.41□□□□□ -0.58
TMCO1-208ENST00000612311 HSPA5P11021 654 aaKnown RBP11.41□□□□□ -0.58
TMCO1-208ENST00000612311 UPF2Q9HAU5 1272 aaKnown RBP11.4□□□□□ -0.58
TMCO1-208ENST00000612311 CARMIL2Q6F5E8 1435 aa11.4□□□□□ -0.58
TMCO1-208ENST00000612311 MPHOSPH9Q99550 1183 aa11.4□□□□□ -0.58
TMCO1-208ENST00000612311 PKD2Q13563 968 aa11.4□□□□□ -0.59
TMCO1-208ENST00000612311 SENP3Q9H4L4 574 aaPredicted RBP11.39□□□□□ -0.59
TMCO1-208ENST00000612311 DHX57Q6P158 1386 aaKnown RBP11.38□□□□□ -0.59
TMCO1-208ENST00000612311 FANCD2Q9BXW9 1451 aa11.38□□□□□ -0.59
TMCO1-208ENST00000612311 IGF1RP08069 1367 aa11.37□□□□□ -0.59
TMCO1-208ENST00000612311 PPP4R2Q9NY27 417 aa11.35□□□□□ -0.59
TMCO1-208ENST00000612311 NCAPD3P42695 1498 aa11.34□□□□□ -0.59
TMCO1-208ENST00000612311 CFAP53Q96M91 514 aa11.33□□□□□ -0.6
TMCO1-208ENST00000612311 TMF1P82094 1093 aa11.33□□□□□ -0.6
TMCO1-208ENST00000612311 L3MBTL2Q969R5 705 aa11.33□□□□□ -0.6
TMCO1-208ENST00000612311 NUP155O75694 1391 aa11.33□□□□□ -0.6
TMCO1-208ENST00000612311 HSP90AA1P07900 732 aaKnown RBP11.33□□□□□ -0.6
TMCO1-208ENST00000612311 ANKRD30AQ9BXX3 1397 aa11.32□□□□□ -0.6
TMCO1-208ENST00000612311 CC2D1BQ5T0F9 858 aaKnown RBP11.32□□□□□ -0.6
TMCO1-208ENST00000612311 NBR1Q14596 966 aa11.32□□□□□ -0.6
TMCO1-208ENST00000612311 FGD5Q6ZNL6 1462 aa11.31□□□□□ -0.6
TMCO1-208ENST00000612311 JPH4Q96JJ6 628 aa11.31□□□□□ -0.6
TMCO1-208ENST00000612311 CCDC18Q5T9S5 1454 aa11.29□□□□□ -0.6
TMCO1-208ENST00000612311 EFCAB2Q5VUJ9 269 aa11.29□□□□□ -0.6
TMCO1-208ENST00000612311 KANK1Q14678 1352 aa11.28□□□□□ -0.6
TMCO1-208ENST00000612311 NEUROD2Q15784 382 aa11.28□□□□□ -0.6
TMCO1-208ENST00000612311 B4GALNT3Q6L9W6 998 aa11.28□□□□□ -0.6
TMCO1-208ENST00000612311 KIF21BO75037 1637 aa11.27□□□□□ -0.61
TMCO1-208ENST00000612311 RAD54L2Q9Y4B4 1467 aa11.26□□□□□ -0.61
TMCO1-208ENST00000612311 HNRNPMP52272 730 aaKnown RBP eCLIP11.26□□□□□ -0.61
TMCO1-208ENST00000612311 POGKQ9P215 609 aa11.25□□□□□ -0.61
TMCO1-208ENST00000612311 TNNT2P45379 298 aaPredicted RBP11.25□□□□□ -0.61
TMCO1-208ENST00000612311 PPM1GO15355 546 aaPredicted RBP11.25□□□□□ -0.61
TMCO1-208ENST00000612311 RSPH4AQ5TD94 716 aa11.25□□□□□ -0.61
TMCO1-208ENST00000612311 GAPVD1Q14C86 1478 aa11.24□□□□□ -0.61
TMCO1-208ENST00000612311 NUDCQ9Y266 331 aa11.24□□□□□ -0.61
TMCO1-208ENST00000612311 MYH16Q9H6N6 1097 aa11.23□□□□□ -0.61
TMCO1-208ENST00000612311 GGT6Q6P531 493 aa11.23□□□□□ -0.61
TMCO1-208ENST00000612311 ROCK2O75116 1388 aaKnown RBP11.23□□□□□ -0.61
TMCO1-208ENST00000612311 SYNJ1O43426 1573 aa11.23□□□□□ -0.61
TMCO1-208ENST00000612311 ARID4BQ4LE39 1312 aaPredicted RBP11.23□□□□□ -0.61
TMCO1-208ENST00000612311 DDRGK1Q96HY6 314 aa11.22□□□□□ -0.61
TMCO1-208ENST00000612311 MAPK8IP3Q9UPT6 1336 aa11.22□□□□□ -0.61
TMCO1-208ENST00000612311 CFTRP13569 1480 aa11.22□□□□□ -0.61
TMCO1-208ENST00000612311 KTN1Q86UP2 1357 aaKnown RBP11.22□□□□□ -0.61
TMCO1-208ENST00000612311 ANP32EQ9BTT0 268 aa11.21□□□□□ -0.62
TMCO1-208ENST00000612311 PHLDB1Q86UU1 1377 aa11.21□□□□□ -0.62
TMCO1-208ENST00000612311 RALBP1Q15311 655 aa11.2□□□□□ -0.62
TMCO1-208ENST00000612311 ARAP1Q96P48 1450 aa11.2□□□□□ -0.62
TMCO1-208ENST00000612311 FTSJ3Q8IY81 847 aaKnown RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms