RNA–Protein interactions for RNA: ENST00000610828.4

NEK3-205, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK3, Length 2,396 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-205ENST00000610828 MRC2Q9UBG0 1479 aa20.47■□□□□ 0.87
NEK3-205ENST00000610828 TIAM1Q13009 1591 aa20.46■□□□□ 0.87
NEK3-205ENST00000610828 EFCAB5A4FU69 1503 aa20.45■□□□□ 0.86
NEK3-205ENST00000610828 FHOD3Q2V2M9 1422 aa20.45■□□□□ 0.86
NEK3-205ENST00000610828 MAP3K1Q13233 1512 aa20.44■□□□□ 0.86
NEK3-205ENST00000610828 RRBP1Q9P2E9 1410 aaKnown RBP20.43■□□□□ 0.86
NEK3-205ENST00000610828 PCF11O94913 1555 aaKnown RBP20.42■□□□□ 0.86
NEK3-205ENST00000610828 ATP1B4Q9UN42 357 aaPredicted RBP20.41■□□□□ 0.86
NEK3-205ENST00000610828 LRRC9Q6ZRR7 1453 aa20.38■□□□□ 0.85
NEK3-205ENST00000610828 CCNB3Q8WWL7 1395 aa20.37■□□□□ 0.85
NEK3-205ENST00000610828 AQRO60306 1485 aaKnown RBP eCLIP20.37■□□□□ 0.853e-7■■■□□ 19
NEK3-205ENST00000610828 PBRM1Q86U86 1689 aa20.37■□□□□ 0.85
NEK3-205ENST00000610828 CFAP43Q8NDM7 1665 aa20.35■□□□□ 0.85
NEK3-205ENST00000610828 FYCO1Q9BQS8 1478 aa20.34■□□□□ 0.85
NEK3-205ENST00000610828 CASKIN1Q8WXD9 1431 aa20.33■□□□□ 0.84
NEK3-205ENST00000610828 WDR62O43379 1518 aa20.32■□□□□ 0.84
NEK3-205ENST00000610828 FMN1Q68DA7 1419 aa20.32■□□□□ 0.84
NEK3-205ENST00000610828 SAMD9Q5K651 1589 aa20.3■□□□□ 0.84
NEK3-205ENST00000610828 IFT140Q96RY7 1462 aa20.29■□□□□ 0.84
NEK3-205ENST00000610828 ERCC6Q03468 1493 aa20.28■□□□□ 0.84
NEK3-205ENST00000610828 ITGAEP38570 1179 aa20.28■□□□□ 0.84
NEK3-205ENST00000610828 GRIN2BQ13224 1484 aa20.28■□□□□ 0.84
NEK3-205ENST00000610828 ADAMTS12P58397 1594 aa20.27■□□□□ 0.84
NEK3-205ENST00000610828 PHLDB1Q86UU1 1377 aa20.27■□□□□ 0.83
NEK3-205ENST00000610828 ZNF608Q9ULD9 1512 aaPredicted RBP20.26■□□□□ 0.83
NEK3-205ENST00000610828 SNAPC4Q5SXM2 1469 aa20.25■□□□□ 0.83
NEK3-205ENST00000610828 DHX57Q6P158 1386 aaKnown RBP20.21■□□□□ 0.83
NEK3-205ENST00000610828 IQGAP2Q13576 1575 aa20.2■□□□□ 0.82
NEK3-205ENST00000610828 FAM50AQ14320 339 aaKnown RBP20.18■□□□□ 0.82
NEK3-205ENST00000610828 CLSPNQ9HAW4 1339 aa20.16■□□□□ 0.82
NEK3-205ENST00000610828 THOC2Q8NI27 1593 aaKnown RBP20.16■□□□□ 0.82
NEK3-205ENST00000610828 EIF4G3O43432 1585 aaKnown RBP20.15■□□□□ 0.82
NEK3-205ENST00000610828 MTUS2Q5JR59 1369 aa20.15■□□□□ 0.82
NEK3-205ENST00000610828 LRRIQ1Q96JM4 1722 aa20.14■□□□□ 0.81
NEK3-205ENST00000610828 DIEXFQ68CQ4 756 aaKnown RBP20.11■□□□□ 0.81
NEK3-205ENST00000610828 RAB3GAP2Q9H2M9 1393 aa20.1■□□□□ 0.81
NEK3-205ENST00000610828 ZNF316A6NFI3 1004 aaPredicted RBP20.1■□□□□ 0.81
NEK3-205ENST00000610828 GRIN2AQ12879 1464 aa20.06■□□□□ 0.8
NEK3-205ENST00000610828 SETD5Q9C0A6 1442 aa20.06■□□□□ 0.8
NEK3-205ENST00000610828 UGGT2Q9NYU1 1516 aa20.06■□□□□ 0.8
NEK3-205ENST00000610828 FGD6Q6ZV73 1430 aa20.05■□□□□ 0.8
NEK3-205ENST00000610828 KIAA0586Q9BVV6 1533 aa20.05■□□□□ 0.8
NEK3-205ENST00000610828 CCDC18Q5T9S5 1454 aa20.04■□□□□ 0.8
NEK3-205ENST00000610828 HECW1Q76N89 1606 aa20.04■□□□□ 0.8
NEK3-205ENST00000610828 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.04■□□□□ 0.8
NEK3-205ENST00000610828 EHBP1L1Q8N3D4 1523 aa20.03■□□□□ 0.8
NEK3-205ENST00000610828 NCOA2Q15596 1464 aa20.03■□□□□ 0.8
NEK3-205ENST00000610828 MAGI1Q96QZ7 1491 aaPredicted RBP20.02■□□□□ 0.8
NEK3-205ENST00000610828 SUPT6HQ7KZ85 1726 aaKnown RBP20.01■□□□□ 0.79
NEK3-205ENST00000610828 CHMP7Q8WUX9 453 aaPredicted RBP20■□□□□ 0.79
NEK3-205ENST00000610828 EPRSP07814 1512 aaKnown RBP19.98■□□□□ 0.79
NEK3-205ENST00000610828 MAGI3Q5TCQ9 1506 aa19.98■□□□□ 0.79
NEK3-205ENST00000610828 MYOM3Q5VTT5 1437 aa19.98■□□□□ 0.79
NEK3-205ENST00000610828 FBLN2P98095 1184 aa19.98■□□□□ 0.79
NEK3-205ENST00000610828 KIAA0556O60303 1618 aa19.97■□□□□ 0.79
NEK3-205ENST00000610828 SYNJ2O15056 1496 aa19.97■□□□□ 0.79
NEK3-205ENST00000610828 DISP1Q96F81 1524 aa19.97■□□□□ 0.79
NEK3-205ENST00000610828 ARID3CA6NKF2 412 aa19.95■□□□□ 0.78
NEK3-205ENST00000610828 CDK13Q14004 1512 aaKnown RBP19.95■□□□□ 0.78
NEK3-205ENST00000610828 MAPKBP1O60336 1514 aa19.93■□□□□ 0.78
NEK3-205ENST00000610828 CEP170Q5SW79 1584 aa19.93■□□□□ 0.78
NEK3-205ENST00000610828 ARHGEF11O15085 1522 aa19.91■□□□□ 0.78
NEK3-205ENST00000610828 PTPN23Q9H3S7 1636 aa19.88■□□□□ 0.77
NEK3-205ENST00000610828 PTPRKQ15262 1439 aa19.88■□□□□ 0.77
NEK3-205ENST00000610828 RAPGEF6Q8TEU7 1601 aa19.85■□□□□ 0.77
NEK3-205ENST00000610828 NUP160Q12769 1436 aa19.85■□□□□ 0.77
NEK3-205ENST00000610828 NUP153P49790 1475 aaKnown RBP19.84■□□□□ 0.77
NEK3-205ENST00000610828 HFM1A2PYH4 1435 aa19.83■□□□□ 0.77
NEK3-205ENST00000610828 JPH4Q96JJ6 628 aa19.81■□□□□ 0.76
NEK3-205ENST00000610828 CARMIL2Q6F5E8 1435 aa19.8■□□□□ 0.76
NEK3-205ENST00000610828 TCOF1Q13428 1488 aaKnown RBP19.8■□□□□ 0.76
NEK3-205ENST00000610828 SIN3AQ96ST3 1273 aa19.78■□□□□ 0.76
NEK3-205ENST00000610828 NAIPQ13075 1403 aa19.78■□□□□ 0.76
NEK3-205ENST00000610828 NEUROD1Q13562 356 aa19.78■□□□□ 0.76
NEK3-205ENST00000610828 CDK11AQ9UQ88 783 aaPredicted RBP19.78■□□□□ 0.76
NEK3-205ENST00000610828 MIA2Q96PC5 1412 aa19.78■□□□□ 0.76
NEK3-205ENST00000610828 PLB1Q6P1J6 1458 aa19.77■□□□□ 0.76
NEK3-205ENST00000610828 CHIC2Q9UKJ5 165 aa19.75■□□□□ 0.75
NEK3-205ENST00000610828 UACAQ9BZF9 1416 aa19.73■□□□□ 0.75
NEK3-205ENST00000610828 RRP7BPQ9NSQ0 103 aa19.72■□□□□ 0.75
NEK3-205ENST00000610828 MIER1Q8N108 512 aa19.71■□□□□ 0.75
NEK3-205ENST00000610828 PRG4Q92954 1404 aaPredicted RBP19.69■□□□□ 0.74
NEK3-205ENST00000610828 TROQ12816 1431 aaPredicted RBP19.68■□□□□ 0.74
NEK3-205ENST00000610828 TIMELESSQ9UNS1 1208 aa19.67■□□□□ 0.74
NEK3-205ENST00000610828 GCC2Q8IWJ2 1684 aa19.66■□□□□ 0.74
NEK3-205ENST00000610828 AKNAQ7Z591 1439 aa19.65■□□□□ 0.74
NEK3-205ENST00000610828 ZNF644Q9H582 1327 aaPredicted RBP19.64■□□□□ 0.73
NEK3-205ENST00000610828 DAPK1P53355 1430 aa19.63■□□□□ 0.73
NEK3-205ENST00000610828 CHD1O14646 1710 aa19.62■□□□□ 0.73
NEK3-205ENST00000610828 ABCA8O94911 1581 aa19.62■□□□□ 0.73
NEK3-205ENST00000610828 CENPBP07199 599 aaPredicted RBP19.62■□□□□ 0.73
NEK3-205ENST00000610828 KIF14Q15058 1648 aa19.61■□□□□ 0.73
NEK3-205ENST00000610828 TRIM52Q96A61 297 aa19.6■□□□□ 0.73
NEK3-205ENST00000610828 ACIN1Q9UKV3 1341 aaKnown RBP19.6■□□□□ 0.73
NEK3-205ENST00000610828 KDM6BO15054 1643 aa19.6■□□□□ 0.73
NEK3-205ENST00000610828 DNMT1P26358 1616 aaKnown RBP19.6■□□□□ 0.73
NEK3-205ENST00000610828 CFDP1Q9UEE9 299 aaPredicted RBP19.59■□□□□ 0.73
NEK3-205ENST00000610828 ADCY10Q96PN6 1610 aa19.59■□□□□ 0.73
NEK3-205ENST00000610828 TONSLQ96HA7 1378 aa19.59■□□□□ 0.73
NEK3-205ENST00000610828 ABCC5O15440 1437 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms