RNA–Protein interactions for RNA: ENST00000607187.1

CTSA-215, Transcript of cathepsin A, humanhuman

TSL 2

Gene CTSA, Length 509 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-215ENST00000607187 TRIM41Q8WV44 630 aa17.2■□□□□ 0.34
CTSA-215ENST00000607187 FHAD1B1AJZ9 1412 aa17.2■□□□□ 0.34
CTSA-215ENST00000607187 KIF27Q86VH2 1401 aa17.16■□□□□ 0.34
CTSA-215ENST00000607187 NUP160Q12769 1436 aa17.13■□□□□ 0.33
CTSA-215ENST00000607187 CEP170Q5SW79 1584 aa17.13■□□□□ 0.33
CTSA-215ENST00000607187 IGF1RP08069 1367 aa17.11■□□□□ 0.33
CTSA-215ENST00000607187 ARAP1Q96P48 1450 aa17.1■□□□□ 0.33
CTSA-215ENST00000607187 CUL7Q14999 1698 aa17.09■□□□□ 0.33
CTSA-215ENST00000607187 CYB5RLQ6IPT4 315 aa17.08■□□□□ 0.32
CTSA-215ENST00000607187 SHROOM2Q13796 1616 aa17.04■□□□□ 0.32
CTSA-215ENST00000607187 NCBP3Q53F19 620 aaKnown RBP17.03■□□□□ 0.32
CTSA-215ENST00000607187 RUSC2Q8N2Y8 1516 aa17.01■□□□□ 0.31
CTSA-215ENST00000607187 CARMIL1Q5VZK9 1371 aa17■□□□□ 0.31
CTSA-215ENST00000607187 ERCC6L2Q5T890 1561 aa16.99■□□□□ 0.31
CTSA-215ENST00000607187 PIAS4Q8N2W9 510 aaPredicted RBP16.96■□□□□ 0.31
CTSA-215ENST00000607187 JPH4Q96JJ6 628 aa16.95■□□□□ 0.3
CTSA-215ENST00000607187 KIAA0586Q9BVV6 1533 aa16.94■□□□□ 0.3
CTSA-215ENST00000607187 PRG4Q92954 1404 aaPredicted RBP16.91■□□□□ 0.3
CTSA-215ENST00000607187 RAPGEF2Q9Y4G8 1499 aa16.89■□□□□ 0.29
CTSA-215ENST00000607187 IQGAP2Q13576 1575 aa16.83■□□□□ 0.28
CTSA-215ENST00000607187 PRXQ9BXM0 1461 aa16.82■□□□□ 0.28
CTSA-215ENST00000607187 NPM3O75607 178 aaKnown RBP16.82■□□□□ 0.28
CTSA-215ENST00000607187 CTTNBP2Q8WZ74 1663 aa16.78■□□□□ 0.28
CTSA-215ENST00000607187 EEA1Q15075 1411 aa16.76■□□□□ 0.27
CTSA-215ENST00000607187 UGGT2Q9NYU1 1516 aa16.75■□□□□ 0.27
CTSA-215ENST00000607187 CARMIL2Q6F5E8 1435 aa16.74■□□□□ 0.27
CTSA-215ENST00000607187 TRHP20396 242 aaPredicted RBP16.74■□□□□ 0.27
CTSA-215ENST00000607187 DISP1Q96F81 1524 aa16.72■□□□□ 0.27
CTSA-215ENST00000607187 ADCY10Q96PN6 1610 aa16.7■□□□□ 0.26
CTSA-215ENST00000607187 TNIKQ9UKE5 1360 aa16.7■□□□□ 0.26
CTSA-215ENST00000607187 PTPRGP23470 1445 aa16.7■□□□□ 0.26
CTSA-215ENST00000607187 KIAA0556O60303 1618 aa16.67■□□□□ 0.26
CTSA-215ENST00000607187 FAM9AQ8IZU1 332 aaPredicted RBP16.64■□□□□ 0.25
CTSA-215ENST00000607187 TTBK1Q5TCY1 1321 aaPredicted RBP16.63■□□□□ 0.25
CTSA-215ENST00000607187 GOLGA3Q08378 1498 aa16.62■□□□□ 0.25
CTSA-215ENST00000607187 MAPKBP1O60336 1514 aa16.62■□□□□ 0.25
CTSA-215ENST00000607187 NPM1P06748 294 aaKnown RBP eCLIP16.62■□□□□ 0.25
CTSA-215ENST00000607187 KIF21BO75037 1637 aa16.62■□□□□ 0.25
CTSA-215ENST00000607187 KIF13AQ9H1H9 1805 aa16.61■□□□□ 0.25
CTSA-215ENST00000607187 ZBTB22O15209 634 aa16.6■□□□□ 0.25
CTSA-215ENST00000607187 UHRF1BP1LA0JNW5 1464 aa16.6■□□□□ 0.25
CTSA-215ENST00000607187 UACAQ9BZF9 1416 aa16.59■□□□□ 0.25
CTSA-215ENST00000607187 ABCC2Q92887 1545 aa16.58■□□□□ 0.24
CTSA-215ENST00000607187 ABCC10Q5T3U5 1492 aa16.54■□□□□ 0.24
CTSA-215ENST00000607187 SAMD9Q5K651 1589 aa16.54■□□□□ 0.24
CTSA-215ENST00000607187 DIP2BQ9P265 1576 aa16.52■□□□□ 0.24
CTSA-215ENST00000607187 KDM5BQ9UGL1 1544 aa16.52■□□□□ 0.24
CTSA-215ENST00000607187 ABCA8O94911 1581 aa16.51■□□□□ 0.23
CTSA-215ENST00000607187 PLB1Q6P1J6 1458 aa16.51■□□□□ 0.23
CTSA-215ENST00000607187 ZCCHC11Q5TAX3 1644 aaKnown RBP16.5■□□□□ 0.23
CTSA-215ENST00000607187 FAM69CQ0P6D2 419 aa16.49■□□□□ 0.23
CTSA-215ENST00000607187 CNKSR2Q8WXI2 1034 aa16.49■□□□□ 0.23
CTSA-215ENST00000607187 ASXL2Q76L83 1435 aa16.48■□□□□ 0.23
CTSA-215ENST00000607187 P3H3Q8IVL6 736 aa16.48■□□□□ 0.23
CTSA-215ENST00000607187 UBTFP17480 764 aaKnown RBP16.43■□□□□ 0.22
CTSA-215ENST00000607187 RANGAP1P46060 587 aaPredicted RBP16.43■□□□□ 0.22
CTSA-215ENST00000607187 TSPOAP1O95153 1857 aa16.43■□□□□ 0.22
CTSA-215ENST00000607187 EFCAB5A4FU69 1503 aa16.43■□□□□ 0.22
CTSA-215ENST00000607187 GLI2P10070 1586 aa16.42■□□□□ 0.22
CTSA-215ENST00000607187 FHOD3Q2V2M9 1422 aa16.4■□□□□ 0.22
CTSA-215ENST00000607187 RAPGEF6Q8TEU7 1601 aa16.4■□□□□ 0.22
CTSA-215ENST00000607187 EPRSP07814 1512 aaKnown RBP16.39■□□□□ 0.21
CTSA-215ENST00000607187 WDR7Q9Y4E6 1490 aa16.38■□□□□ 0.21
CTSA-215ENST00000607187 ATP10BO94823 1461 aa16.36■□□□□ 0.21
CTSA-215ENST00000607187 MAP3K4Q9Y6R4 1608 aa16.35■□□□□ 0.21
CTSA-215ENST00000607187 PPRC1Q5VV67 1664 aaKnown RBP16.35■□□□□ 0.21
CTSA-215ENST00000607187 SCAF1Q9H7N4 1312 aaKnown RBP16.33■□□□□ 0.2
CTSA-215ENST00000607187 NUP153P49790 1475 aaKnown RBP16.33■□□□□ 0.2
CTSA-215ENST00000607187 ARHGAP35Q9NRY4 1499 aa16.33■□□□□ 0.2
CTSA-215ENST00000607187 ARID3CA6NKF2 412 aa16.32■□□□□ 0.2
CTSA-215ENST00000607187 CFAP43Q8NDM7 1665 aa16.28■□□□□ 0.2
CTSA-215ENST00000607187 KDM6BO15054 1643 aa16.28■□□□□ 0.2
CTSA-215ENST00000607187 KCNH8Q96L42 1107 aa16.28■□□□□ 0.2
CTSA-215ENST00000607187 FMN1Q68DA7 1419 aa16.28■□□□□ 0.2
CTSA-215ENST00000607187 TEX14Q8IWB6 1497 aa16.25■□□□□ 0.19
CTSA-215ENST00000607187 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.24■□□□□ 0.19
CTSA-215ENST00000607187 HNRNPUL2Q1KMD3 747 aaKnown RBP16.24■□□□□ 0.19
CTSA-215ENST00000607187 FOXD4L1Q9NU39 408 aa16.24■□□□□ 0.19
CTSA-215ENST00000607187 CD109Q6YHK3 1445 aa16.24■□□□□ 0.19
CTSA-215ENST00000607187 MAGI3Q5TCQ9 1506 aa16.23■□□□□ 0.19
CTSA-215ENST00000607187 ABCA9Q8IUA7 1624 aa16.22■□□□□ 0.19
CTSA-215ENST00000607187 HECW1Q76N89 1606 aa16.21■□□□□ 0.19
CTSA-215ENST00000607187 CDK13Q14004 1512 aaKnown RBP16.19■□□□□ 0.18
CTSA-215ENST00000607187 COL17A1Q9UMD9 1497 aaPredicted RBP16.18■□□□□ 0.18
CTSA-215ENST00000607187 PLEKHD1A6NEE1 506 aa16.18■□□□□ 0.18
CTSA-215ENST00000607187 LRRIQ1Q96JM4 1722 aa16.18■□□□□ 0.18
CTSA-215ENST00000607187 CLIP1P30622 1438 aa16.17■□□□□ 0.18
CTSA-215ENST00000607187 ATP1B4Q9UN42 357 aaPredicted RBP16.15■□□□□ 0.18
CTSA-215ENST00000607187 CASKIN1Q8WXD9 1431 aa16.14■□□□□ 0.17
CTSA-215ENST00000607187 PCF11O94913 1555 aaKnown RBP16.13■□□□□ 0.17
CTSA-215ENST00000607187 SLC24A1O60721 1099 aa16.13■□□□□ 0.17
CTSA-215ENST00000607187 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.12■□□□□ 0.17
CTSA-215ENST00000607187 ARAP3Q8WWN8 1544 aa16.1■□□□□ 0.17
CTSA-215ENST00000607187 TTC37Q6PGP7 1564 aa16.1■□□□□ 0.17
CTSA-215ENST00000607187 CDK11AQ9UQ88 783 aaPredicted RBP16.09■□□□□ 0.17
CTSA-215ENST00000607187 PHLDB1Q86UU1 1377 aa16.09■□□□□ 0.17
CTSA-215ENST00000607187 CCDC18Q5T9S5 1454 aa16.09■□□□□ 0.17
CTSA-215ENST00000607187 FYCO1Q9BQS8 1478 aa16.09■□□□□ 0.17
CTSA-215ENST00000607187 CEP162Q5TB80 1403 aa16.08■□□□□ 0.16
CTSA-215ENST00000607187 NEO1Q92859 1461 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms