RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 KIF27Q86VH2 1401 aa23.01■■□□□ 1.27
RPS28-204ENST00000602140 CUL7Q14999 1698 aa22.93■■□□□ 1.26
RPS28-204ENST00000602140 KIAA0586Q9BVV6 1533 aa22.92■■□□□ 1.26
RPS28-204ENST00000602140 CARMIL1Q5VZK9 1371 aa22.86■■□□□ 1.25
RPS28-204ENST00000602140 NPM1P06748 294 aaKnown RBP eCLIP22.83■■□□□ 1.25
RPS28-204ENST00000602140 KIF13AQ9H1H9 1805 aa22.82■■□□□ 1.24
RPS28-204ENST00000602140 ADCY10Q96PN6 1610 aa22.79■■□□□ 1.24
RPS28-204ENST00000602140 FAM69CQ0P6D2 419 aa22.76■■□□□ 1.23
RPS28-204ENST00000602140 ABCC10Q5T3U5 1492 aa22.75■■□□□ 1.23
RPS28-204ENST00000602140 MAPKBP1O60336 1514 aa22.75■■□□□ 1.23
RPS28-204ENST00000602140 AEBP2Q6ZN18 517 aaPredicted RBP22.74■■□□□ 1.23
RPS28-204ENST00000602140 TTBK1Q5TCY1 1321 aaPredicted RBP22.72■■□□□ 1.23
RPS28-204ENST00000602140 PTPRGP23470 1445 aa22.72■■□□□ 1.23
RPS28-204ENST00000602140 CARMIL2Q6F5E8 1435 aa22.7■■□□□ 1.22
RPS28-204ENST00000602140 IQGAP2Q13576 1575 aa22.69■■□□□ 1.22
RPS28-204ENST00000602140 DIP2BQ9P265 1576 aa22.68■■□□□ 1.22
RPS28-204ENST00000602140 TNIKQ9UKE5 1360 aa22.67■■□□□ 1.22
RPS28-204ENST00000602140 RAPGEF2Q9Y4G8 1499 aa22.64■■□□□ 1.21
RPS28-204ENST00000602140 DISP1Q96F81 1524 aa22.59■■□□□ 1.21
RPS28-204ENST00000602140 ABCC2Q92887 1545 aa22.58■■□□□ 1.21
RPS28-204ENST00000602140 UGGT2Q9NYU1 1516 aa22.55■■□□□ 1.2
RPS28-204ENST00000602140 UACAQ9BZF9 1416 aa22.54■■□□□ 1.2
RPS28-204ENST00000602140 UHRF1BP1LA0JNW5 1464 aa22.54■■□□□ 1.2
RPS28-204ENST00000602140 TSPOAP1O95153 1857 aa22.52■■□□□ 1.2
RPS28-204ENST00000602140 ASXL2Q76L83 1435 aa22.51■■□□□ 1.19
RPS28-204ENST00000602140 KDM6BO15054 1643 aa22.49■■□□□ 1.19
RPS28-204ENST00000602140 PLB1Q6P1J6 1458 aa22.49■■□□□ 1.19
RPS28-204ENST00000602140 KIAA0556O60303 1618 aa22.48■■□□□ 1.19
RPS28-204ENST00000602140 KDM5BQ9UGL1 1544 aa22.44■■□□□ 1.18
RPS28-204ENST00000602140 CTTNBP2Q8WZ74 1663 aa22.43■■□□□ 1.18
RPS28-204ENST00000602140 GLI2P10070 1586 aa22.42■■□□□ 1.18
RPS28-204ENST00000602140 PRXQ9BXM0 1461 aa22.41■■□□□ 1.18
RPS28-204ENST00000602140 ZCCHC11Q5TAX3 1644 aaKnown RBP22.39■■□□□ 1.18
RPS28-204ENST00000602140 EPRSP07814 1512 aaKnown RBP22.37■■□□□ 1.17
RPS28-204ENST00000602140 GOLGA3Q08378 1498 aa22.37■■□□□ 1.17
RPS28-204ENST00000602140 PPRC1Q5VV67 1664 aaKnown RBP22.36■■□□□ 1.17
RPS28-204ENST00000602140 MAP3K4Q9Y6R4 1608 aa22.31■■□□□ 1.16
RPS28-204ENST00000602140 WDR7Q9Y4E6 1490 aa22.29■■□□□ 1.16
RPS28-204ENST00000602140 KDM4FA0A1W2PPD8 638 aa22.29■■□□□ 1.16
RPS28-204ENST00000602140 ABCA8O94911 1581 aa22.29■■□□□ 1.16
RPS28-204ENST00000602140 CSRNP3Q8WYN3 585 aa22.26■■□□□ 1.15
RPS28-204ENST00000602140 TEX14Q8IWB6 1497 aa22.26■■□□□ 1.15
RPS28-204ENST00000602140 COL17A1Q9UMD9 1497 aaPredicted RBP22.25■■□□□ 1.15
RPS28-204ENST00000602140 P3H3Q8IVL6 736 aa22.23■■□□□ 1.15
RPS28-204ENST00000602140 KCNH8Q96L42 1107 aa22.22■■□□□ 1.15
RPS28-204ENST00000602140 FAM9AQ8IZU1 332 aaPredicted RBP22.19■■□□□ 1.14
RPS28-204ENST00000602140 CD109Q6YHK3 1445 aa22.17■■□□□ 1.14
RPS28-204ENST00000602140 ARID3CA6NKF2 412 aa22.16■■□□□ 1.14
RPS28-204ENST00000602140 EEA1Q15075 1411 aa22.14■■□□□ 1.13
RPS28-204ENST00000602140 CFAP43Q8NDM7 1665 aa22.14■■□□□ 1.13
RPS28-204ENST00000602140 MAGI3Q5TCQ9 1506 aa22.13■■□□□ 1.13
RPS28-204ENST00000602140 ATP10BO94823 1461 aa22.12■■□□□ 1.13
RPS28-204ENST00000602140 SAMD9Q5K651 1589 aa22.12■■□□□ 1.13
RPS28-204ENST00000602140 ADGRL1O94910 1474 aa22.1■■□□□ 1.13
RPS28-204ENST00000602140 RANGAP1P46060 587 aaPredicted RBP22.08■■□□□ 1.13
RPS28-204ENST00000602140 RAPGEF6Q8TEU7 1601 aa22.04■■□□□ 1.12
RPS28-204ENST00000602140 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.01■■□□□ 1.11
RPS28-204ENST00000602140 HNRNPUL2Q1KMD3 747 aaKnown RBP22.01■■□□□ 1.11
RPS28-204ENST00000602140 FHOD3Q2V2M9 1422 aa22■■□□□ 1.11
RPS28-204ENST00000602140 ABCA9Q8IUA7 1624 aa21.98■■□□□ 1.11
RPS28-204ENST00000602140 NUP153P49790 1475 aaKnown RBP21.97■■□□□ 1.11
RPS28-204ENST00000602140 ARAP3Q8WWN8 1544 aa21.96■■□□□ 1.11
RPS28-204ENST00000602140 KIF21BO75037 1637 aa21.95■■□□□ 1.1
RPS28-204ENST00000602140 PHLDB1Q86UU1 1377 aa21.91■■□□□ 1.1
RPS28-204ENST00000602140 EFCAB5A4FU69 1503 aa21.9■■□□□ 1.1
RPS28-204ENST00000602140 PLEKHD1A6NEE1 506 aa21.88■■□□□ 1.09
RPS28-204ENST00000602140 EHMT2Q96KQ7 1210 aa21.88■■□□□ 1.09
RPS28-204ENST00000602140 RAPGEF3O95398 923 aa21.87■■□□□ 1.09
RPS28-204ENST00000602140 NEO1Q92859 1461 aa21.87■■□□□ 1.09
RPS28-204ENST00000602140 CHIC1Q5VXU3 224 aa21.85■■□□□ 1.09
RPS28-204ENST00000602140 UBTFP17480 764 aaKnown RBP21.84■■□□□ 1.09
RPS28-204ENST00000602140 HECW2Q9P2P5 1572 aa21.79■■□□□ 1.08
RPS28-204ENST00000602140 FRMPD1Q5SYB0 1578 aa21.78■■□□□ 1.08
RPS28-204ENST00000602140 CDK13Q14004 1512 aaKnown RBP21.77■■□□□ 1.08
RPS28-204ENST00000602140 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.77■■□□□ 1.083e-7■□□□□ 9.3
RPS28-204ENST00000602140 AKNAQ7Z591 1439 aa21.74■■□□□ 1.07
RPS28-204ENST00000602140 ATP1B4Q9UN42 357 aaPredicted RBP21.74■■□□□ 1.07
RPS28-204ENST00000602140 FANCAO15360 1455 aa21.74■■□□□ 1.07
RPS28-204ENST00000602140 TTC37Q6PGP7 1564 aa21.74■■□□□ 1.07
RPS28-204ENST00000602140 DENND4BO75064 1496 aaPredicted RBP21.73■■□□□ 1.07
RPS28-204ENST00000602140 ARHGAP35Q9NRY4 1499 aa21.73■■□□□ 1.07
RPS28-204ENST00000602140 FMN1Q68DA7 1419 aa21.72■■□□□ 1.07
RPS28-204ENST00000602140 CFAP74Q9C0B2 1584 aa21.71■■□□□ 1.07
RPS28-204ENST00000602140 ARID4BQ4LE39 1312 aaPredicted RBP21.7■■□□□ 1.06
RPS28-204ENST00000602140 ADAMTSL3P82987 1691 aa21.69■■□□□ 1.06
RPS28-204ENST00000602140 RICTORQ6R327 1708 aa21.69■■□□□ 1.06
RPS28-204ENST00000602140 HECW1Q76N89 1606 aa21.68■■□□□ 1.06
RPS28-204ENST00000602140 ARHGEF40Q8TER5 1519 aa21.66■■□□□ 1.06
RPS28-204ENST00000602140 PTPRMP28827 1452 aa21.66■■□□□ 1.06
RPS28-204ENST00000602140 BCORL1Q5H9F3 1711 aa21.65■■□□□ 1.06
RPS28-204ENST00000602140 PLCH2O75038 1416 aa21.64■■□□□ 1.06
RPS28-204ENST00000602140 CDK11AQ9UQ88 783 aaPredicted RBP21.63■■□□□ 1.05
RPS28-204ENST00000602140 ZMYM4Q5VZL5 1548 aa21.61■■□□□ 1.05
RPS28-204ENST00000602140 ILDR1Q86SU0 546 aaPredicted RBP21.61■■□□□ 1.05
RPS28-204ENST00000602140 MADDQ8WXG6 1647 aa21.6■■□□□ 1.05
RPS28-204ENST00000602140 SCAPERQ9BY12 1400 aa21.6■■□□□ 1.05
RPS28-204ENST00000602140 YEATS2Q9ULM3 1422 aa21.59■■□□□ 1.05
RPS28-204ENST00000602140 EFCAB2Q5VUJ9 269 aa21.58■■□□□ 1.05
RPS28-204ENST00000602140 ZFYVE16Q7Z3T8 1539 aa21.58■■□□□ 1.04
RPS28-204ENST00000602140 KIF14Q15058 1648 aa21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms