RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 RAPGEF2Q9Y4G8 1499 aa28.37■■■□□ 2.13
TRIM28-215ENST00000601150 ERCC6L2Q5T890 1561 aa28.37■■■□□ 2.13
TRIM28-215ENST00000601150 CHIC1Q5VXU3 224 aa28.33■■■□□ 2.13
TRIM28-215ENST00000601150 JPH4Q96JJ6 628 aa28.33■■■□□ 2.13
TRIM28-215ENST00000601150 PRG4Q92954 1404 aaPredicted RBP28.3■■■□□ 2.12
TRIM28-215ENST00000601150 EEA1Q15075 1411 aa28.27■■■□□ 2.12
TRIM28-215ENST00000601150 PRXQ9BXM0 1461 aa28.26■■■□□ 2.11
TRIM28-215ENST00000601150 IQGAP2Q13576 1575 aa28.24■■■□□ 2.11
TRIM28-215ENST00000601150 CSRNP3Q8WYN3 585 aa28.21■■■□□ 2.11
TRIM28-215ENST00000601150 CTTNBP2Q8WZ74 1663 aa28.19■■■□□ 2.1
TRIM28-215ENST00000601150 FAM9AQ8IZU1 332 aaPredicted RBP28.1■■■□□ 2.09
TRIM28-215ENST00000601150 CARMIL2Q6F5E8 1435 aa28.08■■■□□ 2.09
TRIM28-215ENST00000601150 UGGT2Q9NYU1 1516 aa28.07■■■□□ 2.08
TRIM28-215ENST00000601150 DISP1Q96F81 1524 aa28.02■■■□□ 2.08
TRIM28-215ENST00000601150 KIF21BO75037 1637 aa28.01■■■□□ 2.07
TRIM28-215ENST00000601150 TNIKQ9UKE5 1360 aa27.98■■■□□ 2.07
TRIM28-215ENST00000601150 KIAA0556O60303 1618 aa27.96■■■□□ 2.07
TRIM28-215ENST00000601150 PTPRGP23470 1445 aa27.95■■■□□ 2.07
TRIM28-215ENST00000601150 GOLGA3Q08378 1498 aa27.92■■■□□ 2.06
TRIM28-215ENST00000601150 ADCY10Q96PN6 1610 aa27.92■■■□□ 2.06
TRIM28-215ENST00000601150 TTBK1Q5TCY1 1321 aaPredicted RBP27.88■■■□□ 2.05
TRIM28-215ENST00000601150 TRHP20396 242 aaPredicted RBP27.85■■■□□ 2.05
TRIM28-215ENST00000601150 NPM1P06748 294 aaKnown RBP eCLIP27.8■■■□□ 2.04
TRIM28-215ENST00000601150 SAMD9Q5K651 1589 aa27.77■■■□□ 2.04
TRIM28-215ENST00000601150 UACAQ9BZF9 1416 aa27.77■■■□□ 2.04
TRIM28-215ENST00000601150 UHRF1BP1LA0JNW5 1464 aa27.76■■■□□ 2.04
TRIM28-215ENST00000601150 ABCC2Q92887 1545 aa27.75■■■□□ 2.03
TRIM28-215ENST00000601150 MAPKBP1O60336 1514 aa27.74■■■□□ 2.03
TRIM28-215ENST00000601150 EHMT2Q96KQ7 1210 aa27.72■■■□□ 2.03
TRIM28-215ENST00000601150 UBTFP17480 764 aaKnown RBP27.71■■■□□ 2.03
TRIM28-215ENST00000601150 P3H3Q8IVL6 736 aa27.68■■■□□ 2.02
TRIM28-215ENST00000601150 ABCA8O94911 1581 aa27.66■■■□□ 2.02
TRIM28-215ENST00000601150 PLB1Q6P1J6 1458 aa27.66■■■□□ 2.02
TRIM28-215ENST00000601150 RANGAP1P46060 587 aaPredicted RBP27.66■■■□□ 2.02
TRIM28-215ENST00000601150 KIF13AQ9H1H9 1805 aa27.66■■■□□ 2.02
TRIM28-215ENST00000601150 EFCAB5A4FU69 1503 aa27.65■■■□□ 2.02
TRIM28-215ENST00000601150 KDM5BQ9UGL1 1544 aa27.62■■■□□ 2.01
TRIM28-215ENST00000601150 ZCCHC11Q5TAX3 1644 aaKnown RBP27.62■■■□□ 2.01
TRIM28-215ENST00000601150 ABCC10Q5T3U5 1492 aa27.59■■■□□ 2.01
TRIM28-215ENST00000601150 DIP2BQ9P265 1576 aa27.57■■■□□ 2
TRIM28-215ENST00000601150 FHOD3Q2V2M9 1422 aa27.57■■■□□ 2
TRIM28-215ENST00000601150 ASXL2Q76L83 1435 aa27.54■■■□□ 2
TRIM28-215ENST00000601150 RAPGEF6Q8TEU7 1601 aa27.53■■■□□ 2
TRIM28-215ENST00000601150 FAM69CQ0P6D2 419 aa27.5■■□□□ 1.99
TRIM28-215ENST00000601150 ARHGAP35Q9NRY4 1499 aa27.47■■□□□ 1.99
TRIM28-215ENST00000601150 GLI2P10070 1586 aa27.42■■□□□ 1.98
TRIM28-215ENST00000601150 WDR7Q9Y4E6 1490 aa27.41■■□□□ 1.98
TRIM28-215ENST00000601150 ATP10BO94823 1461 aa27.4■■□□□ 1.98
TRIM28-215ENST00000601150 TSPOAP1O95153 1857 aa27.39■■□□□ 1.98
TRIM28-215ENST00000601150 NUP153P49790 1475 aaKnown RBP27.38■■□□□ 1.97
TRIM28-215ENST00000601150 EPRSP07814 1512 aaKnown RBP27.38■■□□□ 1.97
TRIM28-215ENST00000601150 ARID3CA6NKF2 412 aa27.37■■□□□ 1.97
TRIM28-215ENST00000601150 FMN1Q68DA7 1419 aa27.36■■□□□ 1.97
TRIM28-215ENST00000601150 MAP3K4Q9Y6R4 1608 aa27.31■■□□□ 1.96
TRIM28-215ENST00000601150 CLIP1P30622 1438 aa27.3■■□□□ 1.96
TRIM28-215ENST00000601150 HECW1Q76N89 1606 aa27.28■■□□□ 1.96
TRIM28-215ENST00000601150 PPRC1Q5VV67 1664 aaKnown RBP27.27■■□□□ 1.96
TRIM28-215ENST00000601150 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.27■■□□□ 1.96
TRIM28-215ENST00000601150 HNRNPUL2Q1KMD3 747 aaKnown RBP27.27■■□□□ 1.96
TRIM28-215ENST00000601150 KCNH8Q96L42 1107 aa27.25■■□□□ 1.95
TRIM28-215ENST00000601150 CFAP43Q8NDM7 1665 aa27.24■■□□□ 1.95
TRIM28-215ENST00000601150 CDK13Q14004 1512 aaKnown RBP27.2■■□□□ 1.94
TRIM28-215ENST00000601150 ATP1B4Q9UN42 357 aaPredicted RBP27.19■■□□□ 1.94
TRIM28-215ENST00000601150 PCF11O94913 1555 aaKnown RBP27.18■■□□□ 1.94
TRIM28-215ENST00000601150 LOC105371045A0A1W2PR82 267 aa27.17■■□□□ 1.94
TRIM28-215ENST00000601150 CEP162Q5TB80 1403 aa27.16■■□□□ 1.94
TRIM28-215ENST00000601150 LRRIQ1Q96JM4 1722 aa27.16■■□□□ 1.94
TRIM28-215ENST00000601150 PLEKHD1A6NEE1 506 aa27.16■■□□□ 1.94
TRIM28-215ENST00000601150 TEX14Q8IWB6 1497 aa27.16■■□□□ 1.94
TRIM28-215ENST00000601150 KDM6BO15054 1643 aa27.16■■□□□ 1.94
TRIM28-215ENST00000601150 ABCA9Q8IUA7 1624 aa27.16■■□□□ 1.94
TRIM28-215ENST00000601150 CD109Q6YHK3 1445 aa27.15■■□□□ 1.94
TRIM28-215ENST00000601150 CASKIN1Q8WXD9 1431 aa27.15■■□□□ 1.94
TRIM28-215ENST00000601150 MAGI3Q5TCQ9 1506 aa27.11■■□□□ 1.93
TRIM28-215ENST00000601150 FYCO1Q9BQS8 1478 aa27.1■■□□□ 1.93
TRIM28-215ENST00000601150 CCDC18Q5T9S5 1454 aa27.06■■□□□ 1.92
TRIM28-215ENST00000601150 CDK11AQ9UQ88 783 aaPredicted RBP27.05■■□□□ 1.92
TRIM28-215ENST00000601150 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27■■□□□ 1.91
TRIM28-215ENST00000601150 TTC37Q6PGP7 1564 aa26.99■■□□□ 1.91
TRIM28-215ENST00000601150 TROQ12816 1431 aaPredicted RBP26.98■■□□□ 1.91
TRIM28-215ENST00000601150 KIF14Q15058 1648 aa26.96■■□□□ 1.91
TRIM28-215ENST00000601150 COL17A1Q9UMD9 1497 aaPredicted RBP26.94■■□□□ 1.9
TRIM28-215ENST00000601150 PHLDB1Q86UU1 1377 aa26.91■■□□□ 1.9
TRIM28-215ENST00000601150 NEO1Q92859 1461 aa26.91■■□□□ 1.9
TRIM28-215ENST00000601150 MYO5CQ9NQX4 1742 aa26.9■■□□□ 1.9
TRIM28-215ENST00000601150 CFAP74Q9C0B2 1584 aa26.9■■□□□ 1.9
TRIM28-215ENST00000601150 ARAP3Q8WWN8 1544 aa26.89■■□□□ 1.89
TRIM28-215ENST00000601150 VPS8Q8N3P4 1428 aa26.85■■□□□ 1.89
TRIM28-215ENST00000601150 FANCAO15360 1455 aa26.84■■□□□ 1.89
TRIM28-215ENST00000601150 PLCH2O75038 1416 aa26.83■■□□□ 1.89
TRIM28-215ENST00000601150 AKNAQ7Z591 1439 aa26.79■■□□□ 1.88
TRIM28-215ENST00000601150 MTUS2Q5JR59 1369 aa26.76■■□□□ 1.87
TRIM28-215ENST00000601150 PREX2Q70Z35 1606 aa26.76■■□□□ 1.87
TRIM28-215ENST00000601150 CDC42BPBQ9Y5S2 1711 aa26.75■■□□□ 1.87
TRIM28-215ENST00000601150 CDC42BPAQ5VT25 1732 aa26.74■■□□□ 1.87
TRIM28-215ENST00000601150 ARHGAP5Q13017 1502 aa26.74■■□□□ 1.87
TRIM28-215ENST00000601150 EHBP1L1Q8N3D4 1523 aa26.74■■□□□ 1.87
TRIM28-215ENST00000601150 FRMPD1Q5SYB0 1578 aa26.73■■□□□ 1.87
TRIM28-215ENST00000601150 EFCAB2Q5VUJ9 269 aa26.73■■□□□ 1.87
TRIM28-215ENST00000601150 RICTORQ6R327 1708 aa26.73■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms