RNA–Protein interactions for RNA: ENST00000601038.5

SCAF1-204, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 491 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-204ENST00000601038 RUSC2Q8N2Y8 1516 aa29.58■■■□□ 2.33
SCAF1-204ENST00000601038 CUL7Q14999 1698 aa29.53■■■□□ 2.32
SCAF1-204ENST00000601038 KIAA0586Q9BVV6 1533 aa29.51■■■□□ 2.32
SCAF1-204ENST00000601038 CARMIL1Q5VZK9 1371 aa29.45■■■□□ 2.31
SCAF1-204ENST00000601038 NPM1P06748 294 aaKnown RBP eCLIP29.36■■■□□ 2.29
SCAF1-204ENST00000601038 KIF13AQ9H1H9 1805 aa29.28■■■□□ 2.28
SCAF1-204ENST00000601038 ADCY10Q96PN6 1610 aa29.27■■■□□ 2.28
SCAF1-204ENST00000601038 MAPKBP1O60336 1514 aa29.25■■■□□ 2.27
SCAF1-204ENST00000601038 PTPRGP23470 1445 aa29.23■■■□□ 2.27
SCAF1-204ENST00000601038 ABCC10Q5T3U5 1492 aa29.23■■■□□ 2.27
SCAF1-204ENST00000601038 FAM69CQ0P6D2 419 aa29.22■■■□□ 2.27
SCAF1-204ENST00000601038 CARMIL2Q6F5E8 1435 aa29.21■■■□□ 2.27
SCAF1-204ENST00000601038 IQGAP2Q13576 1575 aa29.19■■■□□ 2.26
SCAF1-204ENST00000601038 RAPGEF2Q9Y4G8 1499 aa29.18■■■□□ 2.26
SCAF1-204ENST00000601038 TNIKQ9UKE5 1360 aa29.18■■■□□ 2.26
SCAF1-204ENST00000601038 TTBK1Q5TCY1 1321 aaPredicted RBP29.13■■■□□ 2.25
SCAF1-204ENST00000601038 DIP2BQ9P265 1576 aa29.11■■■□□ 2.25
SCAF1-204ENST00000601038 AEBP2Q6ZN18 517 aaPredicted RBP29.08■■■□□ 2.25
SCAF1-204ENST00000601038 DISP1Q96F81 1524 aa29.07■■■□□ 2.24
SCAF1-204ENST00000601038 ABCC2Q92887 1545 aa29.04■■■□□ 2.24
SCAF1-204ENST00000601038 UGGT2Q9NYU1 1516 aa29.04■■■□□ 2.24
SCAF1-204ENST00000601038 UHRF1BP1LA0JNW5 1464 aa29.01■■■□□ 2.23
SCAF1-204ENST00000601038 UACAQ9BZF9 1416 aa29■■■□□ 2.23
SCAF1-204ENST00000601038 ASXL2Q76L83 1435 aa28.94■■■□□ 2.22
SCAF1-204ENST00000601038 PLB1Q6P1J6 1458 aa28.93■■■□□ 2.22
SCAF1-204ENST00000601038 KIAA0556O60303 1618 aa28.92■■■□□ 2.22
SCAF1-204ENST00000601038 PRXQ9BXM0 1461 aa28.9■■■□□ 2.22
SCAF1-204ENST00000601038 TSPOAP1O95153 1857 aa28.89■■■□□ 2.21
SCAF1-204ENST00000601038 KDM5BQ9UGL1 1544 aa28.88■■■□□ 2.21
SCAF1-204ENST00000601038 CTTNBP2Q8WZ74 1663 aa28.86■■■□□ 2.21
SCAF1-204ENST00000601038 GLI2P10070 1586 aa28.84■■■□□ 2.21
SCAF1-204ENST00000601038 KDM6BO15054 1643 aa28.84■■■□□ 2.21
SCAF1-204ENST00000601038 GOLGA3Q08378 1498 aa28.83■■■□□ 2.21
SCAF1-204ENST00000601038 ZCCHC11Q5TAX3 1644 aaKnown RBP28.76■■■□□ 2.19
SCAF1-204ENST00000601038 EPRSP07814 1512 aaKnown RBP28.75■■■□□ 2.19
SCAF1-204ENST00000601038 CSRNP3Q8WYN3 585 aa28.73■■■□□ 2.19
SCAF1-204ENST00000601038 PPRC1Q5VV67 1664 aaKnown RBP28.71■■■□□ 2.19
SCAF1-204ENST00000601038 ABCA8O94911 1581 aa28.67■■■□□ 2.18
SCAF1-204ENST00000601038 MAP3K4Q9Y6R4 1608 aa28.66■■■□□ 2.18
SCAF1-204ENST00000601038 WDR7Q9Y4E6 1490 aa28.66■■■□□ 2.18
SCAF1-204ENST00000601038 FAM9AQ8IZU1 332 aaPredicted RBP28.62■■■□□ 2.17
SCAF1-204ENST00000601038 TEX14Q8IWB6 1497 aa28.61■■■□□ 2.17
SCAF1-204ENST00000601038 EEA1Q15075 1411 aa28.6■■■□□ 2.17
SCAF1-204ENST00000601038 KDM4FA0A1W2PPD8 638 aa28.58■■■□□ 2.17
SCAF1-204ENST00000601038 P3H3Q8IVL6 736 aa28.58■■■□□ 2.17
SCAF1-204ENST00000601038 COL17A1Q9UMD9 1497 aaPredicted RBP28.57■■■□□ 2.16
SCAF1-204ENST00000601038 KCNH8Q96L42 1107 aa28.55■■■□□ 2.16
SCAF1-204ENST00000601038 CD109Q6YHK3 1445 aa28.5■■■□□ 2.15
SCAF1-204ENST00000601038 SAMD9Q5K651 1589 aa28.49■■■□□ 2.15
SCAF1-204ENST00000601038 MAGI3Q5TCQ9 1506 aa28.47■■■□□ 2.15
SCAF1-204ENST00000601038 ATP10BO94823 1461 aa28.46■■■□□ 2.15
SCAF1-204ENST00000601038 CFAP43Q8NDM7 1665 aa28.46■■■□□ 2.15
SCAF1-204ENST00000601038 ARID3CA6NKF2 412 aa28.45■■■□□ 2.14
SCAF1-204ENST00000601038 RANGAP1P46060 587 aaPredicted RBP28.38■■■□□ 2.13
SCAF1-204ENST00000601038 RAPGEF6Q8TEU7 1601 aa28.36■■■□□ 2.13
SCAF1-204ENST00000601038 ADGRL1O94910 1474 aa28.33■■■□□ 2.13
SCAF1-204ENST00000601038 KIF21BO75037 1637 aa28.32■■■□□ 2.12
SCAF1-204ENST00000601038 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.31■■■□□ 2.12
SCAF1-204ENST00000601038 HNRNPUL2Q1KMD3 747 aaKnown RBP28.31■■■□□ 2.12
SCAF1-204ENST00000601038 FHOD3Q2V2M9 1422 aa28.31■■■□□ 2.12
SCAF1-204ENST00000601038 NUP153P49790 1475 aaKnown RBP28.28■■■□□ 2.12
SCAF1-204ENST00000601038 ABCA9Q8IUA7 1624 aa28.26■■■□□ 2.11
SCAF1-204ENST00000601038 ARAP3Q8WWN8 1544 aa28.25■■■□□ 2.11
SCAF1-204ENST00000601038 CHIC1Q5VXU3 224 aa28.25■■■□□ 2.11
SCAF1-204ENST00000601038 PHLDB1Q86UU1 1377 aa28.24■■■□□ 2.11
SCAF1-204ENST00000601038 EFCAB5A4FU69 1503 aa28.23■■■□□ 2.11
SCAF1-204ENST00000601038 PLEKHD1A6NEE1 506 aa28.19■■■□□ 2.1
SCAF1-204ENST00000601038 UBTFP17480 764 aaKnown RBP28.17■■■□□ 2.1
SCAF1-204ENST00000601038 NEO1Q92859 1461 aa28.15■■■□□ 2.1
SCAF1-204ENST00000601038 EHMT2Q96KQ7 1210 aa28.12■■■□□ 2.09
SCAF1-204ENST00000601038 RAPGEF3O95398 923 aa28.09■■■□□ 2.09
SCAF1-204ENST00000601038 FMN1Q68DA7 1419 aa28.02■■■□□ 2.08
SCAF1-204ENST00000601038 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28■■■□□ 2.07
SCAF1-204ENST00000601038 ARHGAP35Q9NRY4 1499 aa28■■■□□ 2.07
SCAF1-204ENST00000601038 CDK13Q14004 1512 aaKnown RBP27.99■■■□□ 2.07
SCAF1-204ENST00000601038 AKNAQ7Z591 1439 aa27.97■■■□□ 2.07
SCAF1-204ENST00000601038 FANCAO15360 1455 aa27.96■■■□□ 2.07
SCAF1-204ENST00000601038 FRMPD1Q5SYB0 1578 aa27.96■■■□□ 2.07
SCAF1-204ENST00000601038 ATP1B4Q9UN42 357 aaPredicted RBP27.96■■■□□ 2.07
SCAF1-204ENST00000601038 DENND4BO75064 1496 aaPredicted RBP27.94■■■□□ 2.06
SCAF1-204ENST00000601038 TTC37Q6PGP7 1564 aa27.93■■■□□ 2.06
SCAF1-204ENST00000601038 HECW1Q76N89 1606 aa27.92■■■□□ 2.06
SCAF1-204ENST00000601038 CFAP74Q9C0B2 1584 aa27.91■■■□□ 2.06
SCAF1-204ENST00000601038 CDK11AQ9UQ88 783 aaPredicted RBP27.91■■■□□ 2.06
SCAF1-204ENST00000601038 HECW2Q9P2P5 1572 aa27.9■■■□□ 2.06
SCAF1-204ENST00000601038 PLCH2O75038 1416 aa27.87■■■□□ 2.05
SCAF1-204ENST00000601038 RICTORQ6R327 1708 aa27.87■■■□□ 2.05
SCAF1-204ENST00000601038 ADAMTSL3P82987 1691 aa27.85■■■□□ 2.05
SCAF1-204ENST00000601038 ARID4BQ4LE39 1312 aaPredicted RBP27.85■■■□□ 2.05
SCAF1-204ENST00000601038 ARHGEF40Q8TER5 1519 aa27.82■■■□□ 2.04
SCAF1-204ENST00000601038 PTPRMP28827 1452 aa27.8■■■□□ 2.04
SCAF1-204ENST00000601038 BCORL1Q5H9F3 1711 aa27.79■■■□□ 2.04
SCAF1-204ENST00000601038 ZMYM4Q5VZL5 1548 aa27.79■■■□□ 2.04
SCAF1-204ENST00000601038 EFCAB2Q5VUJ9 269 aa27.79■■■□□ 2.04
SCAF1-204ENST00000601038 TROQ12816 1431 aaPredicted RBP27.78■■■□□ 2.04
SCAF1-204ENST00000601038 SCAPERQ9BY12 1400 aa27.78■■■□□ 2.04
SCAF1-204ENST00000601038 MAGI2Q86UL8 1455 aa27.76■■■□□ 2.04
SCAF1-204ENST00000601038 CLIP1P30622 1438 aa27.74■■■□□ 2.03
SCAF1-204ENST00000601038 POGZQ7Z3K3 1410 aa27.74■■■□□ 2.03
SCAF1-204ENST00000601038 ZFYVE16Q7Z3T8 1539 aa27.73■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms