RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 SYNJ2O15056 1496 aa27.7■■■□□ 2.02
SHKBP1-224ENST00000600718 ARAP1Q96P48 1450 aa27.69■■■□□ 2.02
SHKBP1-224ENST00000600718 GRIN2AQ12879 1464 aa27.67■■■□□ 2.02
SHKBP1-224ENST00000600718 CHMP7Q8WUX9 453 aaPredicted RBP27.66■■■□□ 2.02
SHKBP1-224ENST00000600718 EFCAB5A4FU69 1503 aa27.61■■■□□ 2.01
SHKBP1-224ENST00000600718 FBLN2P98095 1184 aa27.57■■■□□ 2
SHKBP1-224ENST00000600718 KIAA0586Q9BVV6 1533 aa27.55■■■□□ 2
SHKBP1-224ENST00000600718 IQGAP2Q13576 1575 aa27.55■■■□□ 2
SHKBP1-224ENST00000600718 P3H3Q8IVL6 736 aa27.5■■□□□ 1.99
SHKBP1-224ENST00000600718 APLP2Q06481 763 aa27.49■■□□□ 1.99
SHKBP1-224ENST00000600718 TRIM26Q12899 539 aaPredicted RBP27.49■■□□□ 1.99
SHKBP1-224ENST00000600718 SAMD9Q5K651 1589 aa27.49■■□□□ 1.99
SHKBP1-224ENST00000600718 NUP160Q12769 1436 aa27.49■■□□□ 1.99
SHKBP1-224ENST00000600718 PPARGC1BQ86YN6 1023 aaKnown RBP27.47■■□□□ 1.99
SHKBP1-224ENST00000600718 CEP170Q5SW79 1584 aa27.46■■□□□ 1.99
SHKBP1-224ENST00000600718 FHOD3Q2V2M9 1422 aa27.45■■□□□ 1.99
SHKBP1-224ENST00000600718 UGGT2Q9NYU1 1516 aa27.45■■□□□ 1.99
SHKBP1-224ENST00000600718 PCGF6Q9BYE7 350 aa27.4■■□□□ 1.98
SHKBP1-224ENST00000600718 FMN1Q68DA7 1419 aa27.38■■□□□ 1.97
SHKBP1-224ENST00000600718 CHD1O14646 1710 aa27.34■■□□□ 1.97
SHKBP1-224ENST00000600718 JPH4Q96JJ6 628 aa27.31■■□□□ 1.96
SHKBP1-224ENST00000600718 CASKIN1Q8WXD9 1431 aa27.31■■□□□ 1.96
SHKBP1-224ENST00000600718 DISP1Q96F81 1524 aa27.29■■□□□ 1.96
SHKBP1-224ENST00000600718 FYCO1Q9BQS8 1478 aa27.29■■□□□ 1.96
SHKBP1-224ENST00000600718 MAP3K1Q13233 1512 aa27.28■■□□□ 1.96
SHKBP1-224ENST00000600718 PCF11O94913 1555 aaKnown RBP27.27■■□□□ 1.96
SHKBP1-224ENST00000600718 KIAA0556O60303 1618 aa27.26■■□□□ 1.95
SHKBP1-224ENST00000600718 TTBK1Q5TCY1 1321 aaPredicted RBP27.25■■□□□ 1.95
SHKBP1-224ENST00000600718 CARMIL2Q6F5E8 1435 aa27.23■■□□□ 1.95
SHKBP1-224ENST00000600718 ATP1B4Q9UN42 357 aaPredicted RBP27.22■■□□□ 1.95
SHKBP1-224ENST00000600718 KANK4Q5T7N3 995 aaPredicted RBP27.2■■□□□ 1.94
SHKBP1-224ENST00000600718 TIAM1Q13009 1591 aa27.19■■□□□ 1.94
SHKBP1-224ENST00000600718 CFAP43Q8NDM7 1665 aa27.12■■□□□ 1.93
SHKBP1-224ENST00000600718 PRG4Q92954 1404 aaPredicted RBP27.11■■□□□ 1.93
SHKBP1-224ENST00000600718 LRRC9Q6ZRR7 1453 aa27.09■■□□□ 1.93
SHKBP1-224ENST00000600718 SHROOM2Q13796 1616 aa27.09■■□□□ 1.93
SHKBP1-224ENST00000600718 CLASP1Q7Z460 1538 aa27.08■■□□□ 1.93
SHKBP1-224ENST00000600718 HECW1Q76N89 1606 aa27.07■■□□□ 1.92
SHKBP1-224ENST00000600718 CCDC18Q5T9S5 1454 aa27.04■■□□□ 1.92
SHKBP1-224ENST00000600718 LRRIQ1Q96JM4 1722 aa26.99■■□□□ 1.91
SHKBP1-224ENST00000600718 RAPGEF6Q8TEU7 1601 aa26.99■■□□□ 1.91
SHKBP1-224ENST00000600718 EPRSP07814 1512 aaKnown RBP26.98■■□□□ 1.91
SHKBP1-224ENST00000600718 PTPRGP23470 1445 aa26.96■■□□□ 1.91
SHKBP1-224ENST00000600718 OSCARQ8IYS5 282 aa26.95■■□□□ 1.9
SHKBP1-224ENST00000600718 MTUS2Q5JR59 1369 aa26.94■■□□□ 1.9
SHKBP1-224ENST00000600718 PLB1Q6P1J6 1458 aa26.94■■□□□ 1.9
SHKBP1-224ENST00000600718 NUP153P49790 1475 aaKnown RBP26.93■■□□□ 1.9
SHKBP1-224ENST00000600718 ABCA8O94911 1581 aa26.9■■□□□ 1.9
SHKBP1-224ENST00000600718 CDK13Q14004 1512 aaKnown RBP26.88■■□□□ 1.89
SHKBP1-224ENST00000600718 RRBP1Q9P2E9 1410 aaKnown RBP26.88■■□□□ 1.89
SHKBP1-224ENST00000600718 EHBP1L1Q8N3D4 1523 aa26.87■■□□□ 1.89
SHKBP1-224ENST00000600718 ERCC6L2Q5T890 1561 aa26.87■■□□□ 1.89
SHKBP1-224ENST00000600718 ARID3CA6NKF2 412 aa26.84■■□□□ 1.89
SHKBP1-224ENST00000600718 CDK11AQ9UQ88 783 aaPredicted RBP26.84■■□□□ 1.89
SHKBP1-224ENST00000600718 PHLDB1Q86UU1 1377 aa26.82■■□□□ 1.88
SHKBP1-224ENST00000600718 MAGI3Q5TCQ9 1506 aa26.82■■□□□ 1.88
SHKBP1-224ENST00000600718 CCNB3Q8WWL7 1395 aa26.81■■□□□ 1.88
SHKBP1-224ENST00000600718 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.8■■□□□ 1.88
SHKBP1-224ENST00000600718 HNRNPUL2Q1KMD3 747 aaKnown RBP26.8■■□□□ 1.88
SHKBP1-224ENST00000600718 UACAQ9BZF9 1416 aa26.8■■□□□ 1.88
SHKBP1-224ENST00000600718 SUPT6HQ7KZ85 1726 aaKnown RBP26.78■■□□□ 1.88
SHKBP1-224ENST00000600718 NCOA2Q15596 1464 aa26.76■■□□□ 1.87
SHKBP1-224ENST00000600718 ATP10BO94823 1461 aa26.74■■□□□ 1.87
SHKBP1-224ENST00000600718 ARHGEF11O15085 1522 aa26.73■■□□□ 1.87
SHKBP1-224ENST00000600718 TROQ12816 1431 aaPredicted RBP26.7■■□□□ 1.86
SHKBP1-224ENST00000600718 ABCC2Q92887 1545 aa26.68■■□□□ 1.86
SHKBP1-224ENST00000600718 PLEKHD1A6NEE1 506 aa26.67■■□□□ 1.86
SHKBP1-224ENST00000600718 MYOM3Q5VTT5 1437 aa26.67■■□□□ 1.86
SHKBP1-224ENST00000600718 UHRF1BP1LA0JNW5 1464 aa26.66■■□□□ 1.86
SHKBP1-224ENST00000600718 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.66■■□□□ 1.86
SHKBP1-224ENST00000600718 FGD6Q6ZV73 1430 aa26.66■■□□□ 1.86
SHKBP1-224ENST00000600718 FAM50AQ14320 339 aaKnown RBP26.62■■□□□ 1.85
SHKBP1-224ENST00000600718 ADCY10Q96PN6 1610 aa26.57■■□□□ 1.84
SHKBP1-224ENST00000600718 MIA2Q96PC5 1412 aa26.56■■□□□ 1.84
SHKBP1-224ENST00000600718 HRCP23327 699 aa26.54■■□□□ 1.84
SHKBP1-224ENST00000600718 KDM5BQ9UGL1 1544 aa26.54■■□□□ 1.84
SHKBP1-224ENST00000600718 ITGAEP38570 1179 aa26.52■■□□□ 1.84
SHKBP1-224ENST00000600718 PTPN23Q9H3S7 1636 aa26.5■■□□□ 1.83
SHKBP1-224ENST00000600718 TCOF1Q13428 1488 aaKnown RBP26.5■■□□□ 1.83
SHKBP1-224ENST00000600718 KIF14Q15058 1648 aa26.5■■□□□ 1.83
SHKBP1-224ENST00000600718 ZCCHC11Q5TAX3 1644 aaKnown RBP26.47■■□□□ 1.83
SHKBP1-224ENST00000600718 ABCC10Q5T3U5 1492 aa26.45■■□□□ 1.82
SHKBP1-224ENST00000600718 GPATCH8Q9UKJ3 1502 aaKnown RBP26.45■■□□□ 1.82
SHKBP1-224ENST00000600718 ITSN2Q9NZM3 1697 aa26.42■■□□□ 1.82
SHKBP1-224ENST00000600718 CFDP1Q9UEE9 299 aaPredicted RBP26.41■■□□□ 1.82
SHKBP1-224ENST00000600718 CCER1Q8TC90 406 aaPredicted RBP26.4■■□□□ 1.82
SHKBP1-224ENST00000600718 ZEB1P37275 1124 aaPredicted RBP26.37■■□□□ 1.81
SHKBP1-224ENST00000600718 NPM1P06748 294 aaKnown RBP eCLIP26.34■■□□□ 1.81
SHKBP1-224ENST00000600718 PTPRKQ15262 1439 aa26.33■■□□□ 1.81
SHKBP1-224ENST00000600718 SETD5Q9C0A6 1442 aa26.33■■□□□ 1.81
SHKBP1-224ENST00000600718 CDC42BPAQ5VT25 1732 aa26.32■■□□□ 1.8
SHKBP1-224ENST00000600718 KCNH8Q96L42 1107 aa26.32■■□□□ 1.8
SHKBP1-224ENST00000600718 ZNF644Q9H582 1327 aaPredicted RBP26.31■■□□□ 1.8
SHKBP1-224ENST00000600718 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.31■■□□□ 1.8
SHKBP1-224ENST00000600718 CAMSAP2Q08AD1 1489 aa26.29■■□□□ 1.8
SHKBP1-224ENST00000600718 WDR7Q9Y4E6 1490 aa26.28■■□□□ 1.8
SHKBP1-224ENST00000600718 ZNF777Q9ULD5 760 aaPredicted RBP26.27■■□□□ 1.8
SHKBP1-224ENST00000600718 RIMBP3CA6NJZ7 1639 aa26.27■■□□□ 1.8
SHKBP1-224ENST00000600718 RIMBP3BA6NNM3 1639 aa26.27■■□□□ 1.8
SHKBP1-224ENST00000600718 RIMBP3Q9UFD9 1639 aa26.27■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms